PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000304735	[[4421848, 4421994], [4430869, 4433529]]	[[4430878, 4432900]]
NM_138440	[[4421848, 4421994], [4430869, 4433529]]	[[4430878, 4432900]]

Promoter

Chrom	Start	End	Description
chr16	4421841	4421855	CAGE_peak_1_at_VASN_5end
chr16	4431001	4431014	CAGE_peak_4_at_VASN_5end
chr16	4431039	4431055	CAGE_peak_3_at_VASN_5end
chr16	4431154	4431171	CAGE_peak_6_at_VASN_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I004407	4407457	4417616	2.52	[{'connected_gene': 'CORO7', 'score': 561.94}, {'connected_gene': 'CORO7-PAM16', 'score': 550.44}, {'connected_gene': 'NMRAL1', 'score': 38.07}, {'connected_gene': 'HMOX2', 'score': 11.04}, {'connected_gene': 'MGRN1', 'score': 6.39}, {'connected_gene': 'NUDT16L1', 'score': 2.58}, {'connected_gene': 'VASN', 'score': 0.26}]
chr16	GH16I004383	4383521	4390201	1.07	[{'connected_gene': 'NMRAL1', 'score': 27.23}, {'connected_gene': 'PAM16', 'score': 11.86}, {'connected_gene': 'MGRN1', 'score': 5.29}, {'connected_gene': 'VASN', 'score': 0.37}, {'connected_gene': 'CORO7-PAM16', 'score': 0.29}, {'connected_gene': 'CORO7', 'score': 0.28}]
chr16	GH16I004391	4391555	4395731	1.14	[{'connected_gene': 'NMRAL1', 'score': 29.32}, {'connected_gene': 'HMOX2', 'score': 11.95}, {'connected_gene': 'VASN', 'score': 11.91}, {'connected_gene': 'PAM16', 'score': 11.84}, {'connected_gene': 'MGRN1', 'score': 6.43}, {'connected_gene': 'CORO7-PAM16', 'score': 0.31}, {'connected_gene': 'CORO7', 'score': 0.29}]
chr16	GH16I004379	4379974	4381537	0.52	[{'connected_gene': 'NMRAL1', 'score': 20.23}, {'connected_gene': 'HMOX2', 'score': 9.5}, {'connected_gene': 'VASN', 'score': 0.44}, {'connected_gene': 'CORO7-PAM16', 'score': 0.28}, {'connected_gene': 'CORO7', 'score': 0.26}]
chr16	GH16I004381	4381694	4382525	0.46	[{'connected_gene': 'NMRAL1', 'score': 19.42}, {'connected_gene': 'MGRN1', 'score': 6.37}, {'connected_gene': 'VASN', 'score': 0.39}, {'connected_gene': 'CORO7-PAM16', 'score': 0.28}, {'connected_gene': 'CORO7', 'score': 0.26}]
chr16	GH16I004365	4365172	4365957	0.46	[{'connected_gene': 'NMRAL1', 'score': 24.92}, {'connected_gene': 'MGRN1', 'score': 5.01}, {'connected_gene': 'GC16P004366', 'score': 0.77}, {'connected_gene': 'VASN', 'score': 0.44}, {'connected_gene': 'CORO7-PAM16', 'score': 0.23}, {'connected_gene': 'CORO7', 'score': 0.21}]
chr16	GH16I004460	4460886	4462412	0.87	[{'connected_gene': 'NMRAL1', 'score': 19.57}, {'connected_gene': 'VASN', 'score': 11.07}, {'connected_gene': 'PAM16', 'score': 11.05}, {'connected_gene': 'GC16P004458', 'score': 0.77}, {'connected_gene': 'GC16M004469', 'score': 0.44}]
chr16	GH16I004402	4402315	4403449	1.1	[{'connected_gene': 'NMRAL1', 'score': 38.55}, {'connected_gene': 'CORO7-PAM16', 'score': 0.37}, {'connected_gene': 'CORO7', 'score': 0.34}, {'connected_gene': 'VASN', 'score': 0.29}]
chr16	GH16I004390	4390685	4391147	0.51	[{'connected_gene': 'PAM16', 'score': 11.84}, {'connected_gene': 'HMOX2', 'score': 9.71}, {'connected_gene': 'NMRAL1', 'score': 6.3}, {'connected_gene': 'MGRN1', 'score': 5.95}, {'connected_gene': 'VASN', 'score': 0.37}, {'connected_gene': 'CORO7-PAM16', 'score': 0.31}, {'connected_gene': 'CORO7', 'score': 0.29}]
chr16	GH16I004297	4297081	4300828	1.31	[{'connected_gene': 'PAM16', 'score': 11.85}, {'connected_gene': 'VASN', 'score': 11.82}, {'connected_gene': 'LINC01569', 'score': 10.27}, {'connected_gene': 'GC16P004295', 'score': 0.77}, {'connected_gene': 'GC16M004304', 'score': 0.44}]
chr16	GH16I004366	4366767	4368031	0.8	[{'connected_gene': 'HMOX2', 'score': 8.16}, {'connected_gene': 'NMRAL1', 'score': 6.77}, {'connected_gene': 'VASN', 'score': 0.77}, {'connected_gene': 'GC16P004366', 'score': 0.44}, {'connected_gene': 'CORO7-PAM16', 'score': 0.23}, {'connected_gene': 'CORO7', 'score': 0.22}]
chr16	GH16I004404	4404340	4405139	0.97	[{'connected_gene': 'CDIP1', 'score': 11.29}, {'connected_gene': 'CLUAP1', 'score': 10.91}, {'connected_gene': 'NMRAL1', 'score': 10.91}, {'connected_gene': 'ANKS3', 'score': 10.35}, {'connected_gene': 'CORO7-PAM16', 'score': 0.37}, {'connected_gene': 'CORO7', 'score': 0.34}, {'connected_gene': 'VASN', 'score': 0.29}]
chr16	GH16I004401	4401382	4401508	0.25	[{'connected_gene': 'UBN1', 'score': 13.86}, {'connected_gene': 'MGRN1', 'score': 7.33}, {'connected_gene': 'CORO7', 'score': 5.17}, {'connected_gene': 'GLYR1', 'score': 1.71}, {'connected_gene': 'CORO7-PAM16', 'score': 0.37}, {'connected_gene': 'VASN', 'score': 0.31}]
chr16	GH16I004313	4313440	4325691	1.95	[{'connected_gene': 'ZNF500', 'score': 34.4}, {'connected_gene': 'ANKS3', 'score': 19.88}, {'connected_gene': 'ENSG00000261938', 'score': 19.71}, {'connected_gene': 'PAM16', 'score': 13.61}, {'connected_gene': 'ZSCAN32', 'score': 12.34}, {'connected_gene': 'VASN', 'score': 12.25}, {'connected_gene': 'CREBBP', 'score': 11.87}, {'connected_gene': 'ZNF174', 'score': 11.0}, {'connected_gene': 'CLUAP1', 'score': 10.41}, {'connected_gene': 'NMRAL1', 'score': 6.29}, {'connected_gene': 'LINC01569', 'score': 5.57}, {'connected_gene': 'HMOX2', 'score': 4.94}, {'connected_gene': 'CORO7', 'score': 4.46}, {'connected_gene': 'GLIS2', 'score': 0.77}, {'connected_gene': 'GLIS2-AS1', 'score': 0.44}]
chr16	GH16I004368	4368833	4379783	2.66	[{'connected_gene': 'VASN', 'score': 550.77}, {'connected_gene': 'NMRAL1', 'score': 27.12}, {'connected_gene': 'ANKS3', 'score': 19.88}, {'connected_gene': 'CREBBP', 'score': 15.13}, {'connected_gene': 'ZNF500', 'score': 13.64}, {'connected_gene': 'ZSCAN32', 'score': 12.34}, {'connected_gene': 'ZNF174', 'score': 11.0}, {'connected_gene': 'HMOX2', 'score': 10.86}, {'connected_gene': 'CLUAP1', 'score': 10.41}, {'connected_gene': 'ENSG00000261938', 'score': 9.83}, {'connected_gene': 'MGRN1', 'score': 8.25}, {'connected_gene': 'UBN1', 'score': 7.71}, {'connected_gene': 'PAM16', 'score': 5.03}, {'connected_gene': 'GLIS2', 'score': 1.93}, {'connected_gene': 'CORO7', 'score': 1.72}, {'connected_gene': 'GC16P004366', 'score': 0.39}, {'connected_gene': 'CORO7-PAM16', 'score': 0.25}]
chr16	GH16I004382	4382659	4383348	0.31	[{'connected_gene': 'VASN', 'score': 0.39}, {'connected_gene': 'CORO7-PAM16', 'score': 0.28}, {'connected_gene': 'CORO7', 'score': 0.26}]
chr16	GH16I003694	3694629	3697750	1.21	[{'connected_gene': 'TRAP1', 'score': 39.79}, {'connected_gene': 'CLUAP1', 'score': 19.57}, {'connected_gene': 'DNASE1', 'score': 13.98}, {'connected_gene': 'VASN', 'score': 10.95}, {'connected_gene': 'LOC105371058', 'score': 6.57}, {'connected_gene': 'PIR47361', 'score': 0.44}]
chr16	GH16I004458	4458461	4460148	1.31	[{'connected_gene': 'GC16P004458', 'score': 550.77}, {'connected_gene': 'NMRAL1', 'score': 46.0}, {'connected_gene': 'VASN', 'score': 11.07}, {'connected_gene': 'PAM16', 'score': 11.05}, {'connected_gene': 'MGRN1', 'score': 6.09}, {'connected_gene': 'CORO7', 'score': 5.53}, {'connected_gene': 'GC16M004469', 'score': 0.39}]
chr16	GH16I004293	4293263	4295105	1.23	[{'connected_gene': 'GC16P004295', 'score': 550.77}, {'connected_gene': 'PAM16', 'score': 11.84}, {'connected_gene': 'VASN', 'score': 11.81}, {'connected_gene': 'LINC01569', 'score': 10.87}, {'connected_gene': 'GC16P004288', 'score': 0.44}]
chr16	GH16I004295	4295147	4295973	0.38	[{'connected_gene': 'GC16P004295', 'score': 550.77}, {'connected_gene': 'PAM16', 'score': 11.84}, {'connected_gene': 'VASN', 'score': 11.81}, {'connected_gene': 'LINC01569', 'score': 10.73}, {'connected_gene': 'GC16P004288', 'score': 0.44}]