PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000462401	[[126152959, 126153048], [126160697, 126160856], [126161167, 126161464]]	None
ENST00000488598	[[126152967, 126153048], [126159559, 126159728], [126160356, 126160480], [126160697, 126160856], [126161319, 126161464], [126162371, 126162582]]	[[126160789, 126160856], [126161319, 126161402]]
ENST00000392679	[[126152981, 126153048], [126160356, 126160480], [126160697, 126160856], [126162371, 126162950], [126163562, 126164828]]	[[126160789, 126160856], [126162371, 126162950], [126163562, 126163582]]
ENST00000467006	[[126153000, 126153048], [126158337, 126158468], [126159559, 126159728], [126160356, 126160480], [126160697, 126160792]]	None
ENST00000392678	[[126153004, 126153048], [126159559, 126159728], [126160356, 126160480], [126160697, 126160856], [126162371, 126163139]]	[[126160789, 126160856], [126162371, 126163012]]
ENST00000392680	[[126153012, 126153048], [126159559, 126159712], [126160356, 126160480], [126160697, 126160856], [126162371, 126162950], [126163562, 126164579]]	[[126160789, 126160856], [126162371, 126162950], [126163562, 126163582]]
ENST00000479770	[[126160750, 126160856], [126162371, 126162950], [126163562, 126164534], [126168152, 126168740]]	[[126160789, 126160856], [126162371, 126162950], [126163562, 126163582]]
NM_001318776	[[126152981, 126153048], [126160356, 126160480], [126160697, 126160856], [126162371, 126163071]]	[[126160789, 126160856], [126162371, 126163012]]
NM_148910	[[126152981, 126153048], [126159559, 126159728], [126160356, 126160480], [126160697, 126160856], [126162371, 126163071]]	[[126160789, 126160856], [126162371, 126163012]]
NM_001318777	[[126152981, 126153048], [126160356, 126160480], [126160697, 126160856], [126162371, 126162950], [126163562, 126164828]]	[[126160789, 126160856], [126162371, 126162950], [126163562, 126163582]]
NM_001039661	[[126152981, 126153048], [126159559, 126159712], [126160356, 126160480], [126160697, 126160856], [126162371, 126162950], [126163562, 126164828]]	[[126160789, 126160856], [126162371, 126162950], [126163562, 126163582]]

Promoter

Chrom	Start	End	Description
chr11	126152941	126152949	CAGE_peak_3_at_TIRAP_5end
chr11	126152954	126152999	CAGE_peak_1_at_TIRAP_5end
chr11	126153001	126153014	CAGE_peak_2_at_TIRAP_5end
chr11	126153015	126153018	CAGE_peak_4_at_TIRAP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I126350	126350337	126361823	2.44	[{'connected_gene': 'ST3GAL4', 'score': 561.62}, {'connected_gene': 'GSEC', 'score': 550.77}, {'connected_gene': 'HP11014', 'score': 46.58}, {'connected_gene': 'TIRAP', 'score': 37.84}, {'connected_gene': 'STT3A', 'score': 30.19}, {'connected_gene': 'FOXRED1', 'score': 15.3}, {'connected_gene': 'DCPS', 'score': 11.91}, {'connected_gene': 'FAM118B', 'score': 9.93}, {'connected_gene': 'ENSG00000278215', 'score': 0.34}]
chr11	GH11I126399	126399433	126407664	1.34	[{'connected_gene': 'ST3GAL4', 'score': 558.72}, {'connected_gene': 'TIRAP', 'score': 12.48}, {'connected_gene': 'HP11014', 'score': 10.95}, {'connected_gene': 'FOXRED1', 'score': 6.46}, {'connected_gene': 'FAM118B', 'score': 5.65}, {'connected_gene': 'ENSG00000278215', 'score': 0.31}, {'connected_gene': 'KIRREL3-AS1', 'score': 0.11}]
chr11	GH11I126310	126310266	126313287	1.41	[{'connected_gene': 'FOXRED1', 'score': 42.74}, {'connected_gene': 'FAM118B', 'score': 25.5}, {'connected_gene': 'DCPS', 'score': 10.57}, {'connected_gene': 'TIRAP', 'score': 5.2}, {'connected_gene': 'SRPRA', 'score': 1.54}, {'connected_gene': 'HP11014', 'score': 0.44}, {'connected_gene': 'PIR55528', 'score': 0.31}]
chr11	GH11I126266	126266902	126270172	2.04	[{'connected_gene': 'FOXRED1', 'score': 604.88}, {'connected_gene': 'SRPRA', 'score': 550.77}, {'connected_gene': 'FAM118B', 'score': 32.42}, {'connected_gene': 'TIRAP', 'score': 12.75}, {'connected_gene': 'HP11014', 'score': 11.07}, {'connected_gene': 'RN7SL351P', 'score': 0.34}]
chr11	GH11I126317	126317184	126320389	1.34	[{'connected_gene': 'FOXRED1', 'score': 48.76}, {'connected_gene': 'ST3GAL4', 'score': 12.36}, {'connected_gene': 'TIRAP', 'score': 12.16}, {'connected_gene': 'ENSG00000254694', 'score': 10.88}, {'connected_gene': 'SRPRA', 'score': 10.37}, {'connected_gene': 'DCPS', 'score': 6.32}, {'connected_gene': 'FAM118B', 'score': 4.61}, {'connected_gene': 'HYLS1', 'score': 1.24}, {'connected_gene': 'HP11014', 'score': 0.39}, {'connected_gene': 'PIR55528', 'score': 0.34}]
chr11	GH11I126060	126060635	126064105	2.24	[{'connected_gene': 'CDON', 'score': 556.09}, {'connected_gene': 'TIRAP', 'score': 27.29}, {'connected_gene': 'STT3A', 'score': 25.54}, {'connected_gene': 'TMEM218', 'score': 25.1}, {'connected_gene': 'FEZ1', 'score': 11.29}, {'connected_gene': 'SRPRA', 'score': 10.12}, {'connected_gene': 'PIR48177', 'score': 0.23}]
chr11	GH11I125591	125591163	125594304	2.08	[{'connected_gene': 'STT3A', 'score': 562.43}, {'connected_gene': 'STT3A-AS1', 'score': 550.77}, {'connected_gene': 'HP11014', 'score': 38.61}, {'connected_gene': 'TMEM218', 'score': 22.92}, {'connected_gene': 'CHEK1', 'score': 22.75}, {'connected_gene': 'MSANTD2', 'score': 20.59}, {'connected_gene': 'ENSG00000254509', 'score': 14.18}, {'connected_gene': 'TIRAP', 'score': 12.38}, {'connected_gene': 'ENSG00000254694', 'score': 12.23}, {'connected_gene': 'EI24', 'score': 11.93}, {'connected_gene': 'CDON', 'score': 10.0}, {'connected_gene': 'DDX25', 'score': 7.52}, {'connected_gene': 'FEZ1', 'score': 5.59}, {'connected_gene': 'PUS3', 'score': 4.47}]
chr11	GH11I126339	126339374	126350222	1.64	[{'connected_gene': 'DCPS', 'score': 21.02}, {'connected_gene': 'FOXRED1', 'score': 18.43}, {'connected_gene': 'TIRAP', 'score': 16.08}, {'connected_gene': 'FAM118B', 'score': 13.82}, {'connected_gene': 'STT3A', 'score': 13.33}, {'connected_gene': 'HP11014', 'score': 12.24}, {'connected_gene': 'ST3GAL4', 'score': 7.23}, {'connected_gene': 'GC11P126349', 'score': 0.77}, {'connected_gene': 'PIR55528', 'score': 0.44}, {'connected_gene': 'GSEC', 'score': 0.39}]
chr11	GH11I126083	126083837	126084886	0.69	[{'connected_gene': 'TIRAP', 'score': 6.33}, {'connected_gene': 'NAP1L1P1', 'score': 0.37}, {'connected_gene': 'ENSG00000261257', 'score': 0.37}]
chr11	GH11I126280	126280368	126284525	1.95	[{'connected_gene': 'TIRAP', 'score': 550.77}, {'connected_gene': 'FOXRED1', 'score': 53.11}, {'connected_gene': 'FAM118B', 'score': 42.33}, {'connected_gene': 'ENSG00000254694', 'score': 21.8}, {'connected_gene': 'DCPS', 'score': 18.95}, {'connected_gene': 'HP11014', 'score': 11.65}, {'connected_gene': 'RPUSD4', 'score': 10.74}, {'connected_gene': 'RNU4-86P', 'score': 10.04}, {'connected_gene': 'ENSG00000254905', 'score': 0.39}]
chr11	GH11I126437	126437737	126438691	0.59	[{'connected_gene': 'TIRAP', 'score': 18.47}, {'connected_gene': 'STT3A', 'score': 15.18}, {'connected_gene': 'DCPS', 'score': 11.72}, {'connected_gene': 'HP11014', 'score': 11.72}, {'connected_gene': 'ST3GAL4', 'score': 11.15}, {'connected_gene': 'SRPRA', 'score': 10.14}, {'connected_gene': 'LOC105369558', 'score': 9.33}, {'connected_gene': 'ENSG00000278215', 'score': 0.21}, {'connected_gene': 'KIRREL3-AS1', 'score': 0.14}, {'connected_gene': 'KIRREL3', 'score': 0.03}]
chr11	GH11I126307	126307668	126309059	0.46	[{'connected_gene': 'TIRAP', 'score': 4.94}, {'connected_gene': 'DCPS', 'score': 0.77}, {'connected_gene': 'HP11014', 'score': 0.77}, {'connected_gene': 'PIR55528', 'score': 0.29}]
chr11	GH11I126284	126284848	126285155	0.74	[{'connected_gene': 'TIRAP', 'score': 0.77}, {'connected_gene': 'ENSG00000254905', 'score': 0.44}]
chr11	GH11I125624	125624374	125627766	2.11	[{'connected_gene': 'CHEK1', 'score': 562.92}, {'connected_gene': 'HP11014', 'score': 35.3}, {'connected_gene': 'TMEM218', 'score': 34.82}, {'connected_gene': 'TIRAP', 'score': 26.43}, {'connected_gene': 'MSANTD2', 'score': 21.8}, {'connected_gene': 'FEZ1', 'score': 15.73}, {'connected_gene': 'STT3A', 'score': 13.6}, {'connected_gene': 'CCDC15', 'score': 12.93}, {'connected_gene': 'ACRV1', 'score': 4.89}, {'connected_gene': 'PUS3', 'score': 4.8}, {'connected_gene': 'RNU2-35P', 'score': 0.34}]
chr11	GH11I126478	126478001	126478200	0.31	[{'connected_gene': 'HP11014', 'score': 12.15}, {'connected_gene': 'ENSG00000254905', 'score': 12.14}, {'connected_gene': 'TIRAP', 'score': 12.14}, {'connected_gene': 'FOXRED1', 'score': 9.53}, {'connected_gene': 'SRPRA', 'score': 9.53}, {'connected_gene': 'KIRREL3-AS1', 'score': 0.2}, {'connected_gene': 'ENSG00000278215', 'score': 0.15}, {'connected_gene': 'ST3GAL4', 'score': 0.13}, {'connected_gene': 'KIRREL3', 'score': 0.03}]
chr11	GH11I126480	126480401	126481495	1.27	[{'connected_gene': 'HP11014', 'score': 12.15}, {'connected_gene': 'ENSG00000254905', 'score': 12.14}, {'connected_gene': 'TIRAP', 'score': 12.14}, {'connected_gene': 'DCPS', 'score': 11.13}, {'connected_gene': 'KIRREL3', 'score': 9.68}, {'connected_gene': 'FOXRED1', 'score': 9.52}, {'connected_gene': 'SRPRA', 'score': 9.52}, {'connected_gene': 'KIRREL3-AS1', 'score': 0.21}, {'connected_gene': 'ENSG00000278215', 'score': 0.15}, {'connected_gene': 'ST3GAL4', 'score': 0.13}]