PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000299565	[[78857861, 78858167], [78873152, 78873304], [78878986, 78879031], [78880655, 78880765], [78882146, 78882978], [78885433, 78887611]]	[[78858061, 78858167], [78873152, 78873304], [78878986, 78879031], [78880655, 78880765], [78882146, 78882978], [78885433, 78885595]]
ENST00000559554	[[78857912, 78858167], [78873152, 78873304], [78878986, 78879031], [78880655, 78880765], [78882146, 78882191], [78885433, 78885877]]	[[78858061, 78858167], [78873152, 78873304], [78878986, 78879031], [78880655, 78880765], [78882146, 78882191], [78885433, 78885458]]
ENST00000394802	[[78873231, 78873304], [78878986, 78879031], [78880655, 78880765], [78882146, 78882440], [78885433, 78885616]]	[[78873231, 78873304], [78878986, 78879031], [78880655, 78880765], [78882146, 78882440], [78885433, 78885458]]
ENST00000559576	[[78882703, 78882848], [78885433, 78886043]]	[[78882703, 78882848], [78885433, 78885458]]
NM_001307945	[[78857861, 78858167], [78873152, 78873304], [78878986, 78879031], [78880655, 78880765], [78882146, 78882191], [78885433, 78887611]]	[[78858061, 78858167], [78873152, 78873304], [78878986, 78879031], [78880655, 78880765], [78882146, 78882191], [78885433, 78885458]]
NM_000745	[[78857861, 78858167], [78873152, 78873304], [78878986, 78879031], [78880655, 78880765], [78882146, 78882978], [78885433, 78887611]]	[[78858061, 78858167], [78873152, 78873304], [78878986, 78879031], [78880655, 78880765], [78882146, 78882978], [78885433, 78885595]]

Promoter

Chrom	Start	End	Description
chr15	78857836	78857847	CAGE_peak_3_at_CHRNA5_5end
chr15	78857849	78857869	CAGE_peak_2_at_CHRNA5_5end
chr15	78857870	78857897	CAGE_peak_1_at_CHRNA5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I078759	78759435	78762399	1.09	[{'connected_gene': 'LOC646934', 'score': 14.61}, {'connected_gene': 'ADAMTS7P3', 'score': 14.4}, {'connected_gene': 'CHRNA5', 'score': 12.85}, {'connected_gene': 'CTSH', 'score': 5.52}, {'connected_gene': 'CHRNA3', 'score': 5.4}, {'connected_gene': 'WDR61', 'score': 4.88}, {'connected_gene': 'LOC105370914', 'score': 0.77}, {'connected_gene': 'MORF4L1', 'score': 0.25}, {'connected_gene': 'ADAMTS7', 'score': 0.23}]
chr15	GH15I078991	78991575	78997419	1.36	[{'connected_gene': 'RASGRF1', 'score': 7.67}, {'connected_gene': 'CHRNA5', 'score': 4.77}, {'connected_gene': 'LOC105370917', 'score': 0.77}, {'connected_gene': 'GC15M078980', 'score': 0.39}]
chr15	GH15I078539	78539505	78542505	2.03	[{'connected_gene': 'PSMA4', 'score': 564.77}, {'connected_gene': 'CHRNA5', 'score': 83.13}, {'connected_gene': 'HYKK', 'score': 12.3}, {'connected_gene': 'IREB2', 'score': 6.07}, {'connected_gene': 'GC15M078021', 'score': 0.1}]
chr15	GH15I078709	78709310	78709899	0.99	[{'connected_gene': 'ADAMTS7P3', 'score': 12.54}, {'connected_gene': 'CHRNA5', 'score': 10.51}, {'connected_gene': 'WDR61', 'score': 9.66}, {'connected_gene': 'GC15M078021', 'score': 0.44}, {'connected_gene': 'LOC105370913', 'score': 0.37}, {'connected_gene': 'CHRNB4', 'score': 0.37}, {'connected_gene': 'LOC646934', 'score': 0.25}]
chr15	GH15I078315	78315392	78317578	0.92	[{'connected_gene': 'IREB2', 'score': 32.08}, {'connected_gene': 'ENSG00000259562', 'score': 32.05}, {'connected_gene': 'WDR61', 'score': 22.65}, {'connected_gene': 'ENSG00000260988', 'score': 21.07}, {'connected_gene': 'CRABP1', 'score': 12.44}, {'connected_gene': 'ACSBG1', 'score': 10.18}, {'connected_gene': 'ENSG00000259322', 'score': 10.12}, {'connected_gene': 'HYKK', 'score': 9.79}, {'connected_gene': 'CHRNA5', 'score': 9.57}, {'connected_gene': 'DNAJA4', 'score': 8.93}, {'connected_gene': 'GC15P078331', 'score': 0.39}, {'connected_gene': 'GC15M078021', 'score': 0.05}]
chr15	GH15I078464	78464823	78466534	0.2	[{'connected_gene': 'IREB2', 'score': 28.05}, {'connected_gene': 'HYKK', 'score': 11.72}, {'connected_gene': 'WDR61', 'score': 11.08}, {'connected_gene': 'CHRNA5', 'score': 10.62}, {'connected_gene': 'PSMA4', 'score': 9.4}, {'connected_gene': 'ENSG00000259474', 'score': 0.37}, {'connected_gene': 'GC15M078021', 'score': 0.07}]
chr15	GH15I078436	78436676	78440861	2.29	[{'connected_gene': 'IREB2', 'score': 572.3}, {'connected_gene': 'CHRNA5', 'score': 33.72}, {'connected_gene': 'TBC1D2B', 'score': 13.28}, {'connected_gene': 'ENSG00000260988', 'score': 11.55}, {'connected_gene': 'WDR61', 'score': 11.37}, {'connected_gene': 'ENSG00000259792', 'score': 10.57}, {'connected_gene': 'PSMA4', 'score': 9.31}, {'connected_gene': 'ENSG00000259474', 'score': 0.26}, {'connected_gene': 'GC15M078021', 'score': 0.07}]
chr15	GH15I078640	78640800	78642676	1.8	[{'connected_gene': 'CHRNB4', 'score': 550.17}, {'connected_gene': 'CHRNA5', 'score': 14.64}, {'connected_gene': 'IREB2', 'score': 14.04}, {'connected_gene': 'ENSG00000259562', 'score': 11.66}, {'connected_gene': 'PSMA4', 'score': 11.09}, {'connected_gene': 'TBC1D2B', 'score': 10.27}, {'connected_gene': 'ENSG00000261762', 'score': 6.81}, {'connected_gene': 'PIR44812', 'score': 0.39}, {'connected_gene': 'LOC646934', 'score': 0.37}, {'connected_gene': 'GC15M078021', 'score': 0.22}]
chr15	GH15I078564	78564707	78566946	1.93	[{'connected_gene': 'CHRNA5', 'score': 598.59}, {'connected_gene': 'PSMA4', 'score': 13.84}, {'connected_gene': 'IREB2', 'score': 13.14}, {'connected_gene': 'TBC1D2B', 'score': 10.96}, {'connected_gene': 'HYKK', 'score': 10.75}, {'connected_gene': 'MORF4L1', 'score': 9.42}, {'connected_gene': 'ADAMTS7', 'score': 9.41}, {'connected_gene': 'CRABP1', 'score': 9.36}, {'connected_gene': 'RASGRF1', 'score': 4.7}, {'connected_gene': 'ENSG00000261762', 'score': 0.31}, {'connected_gene': 'GC15M078021', 'score': 0.12}]
chr15	GH15I078460	78460972	78462348	1	[{'connected_gene': 'CHRNA5', 'score': 43.9}, {'connected_gene': 'IREB2', 'score': 21.22}, {'connected_gene': 'WDR61', 'score': 11.07}, {'connected_gene': 'CRABP1', 'score': 10.27}, {'connected_gene': 'ACSBG1', 'score': 1.9}, {'connected_gene': 'ENSG00000259474', 'score': 0.34}, {'connected_gene': 'GC15M078021', 'score': 0.07}]
chr15	GH15I078447	78447512	78451094	1.19	[{'connected_gene': 'CHRNA5', 'score': 33.71}, {'connected_gene': 'CRABP1', 'score': 10.19}, {'connected_gene': 'PSMA4', 'score': 9.2}, {'connected_gene': 'IREB2', 'score': 0.39}, {'connected_gene': 'ENSG00000259474', 'score': 0.29}, {'connected_gene': 'GC15M078021', 'score': 0.07}]
chr15	GH15I078671	78671239	78672483	0.66	[{'connected_gene': 'CHRNA5', 'score': 16.31}, {'connected_gene': 'CRABP1', 'score': 9.54}, {'connected_gene': 'CHRNB4', 'score': 6.58}, {'connected_gene': 'GC15M078668', 'score': 0.77}, {'connected_gene': 'LOC646934', 'score': 0.39}, {'connected_gene': 'RPL18P11', 'score': 0.39}, {'connected_gene': 'GC15M078021', 'score': 0.31}]
chr15	GH15I078720	78720001	78720400	0.86	[{'connected_gene': 'CHRNA5', 'score': 15.11}, {'connected_gene': 'ADAMTS7', 'score': 11.07}, {'connected_gene': 'MORF4L1', 'score': 11.07}, {'connected_gene': 'ADAMTS7P3', 'score': 8.14}, {'connected_gene': 'LOC105370913', 'score': 0.44}, {'connected_gene': 'CHRNB4', 'score': 0.44}, {'connected_gene': 'GC15M078021', 'score': 0.34}, {'connected_gene': 'LOC646934', 'score': 0.22}]
chr15	GH15I078803	78803939	78805139	0.63	[{'connected_gene': 'CHRNA5', 'score': 8.09}, {'connected_gene': 'ADAMTS7', 'score': 0.44}, {'connected_gene': 'MORF4L1', 'score': 0.44}, {'connected_gene': 'LOC105370914', 'score': 0.25}]
chr15	GH15I078620	78620986	78621045	0.79	[{'connected_gene': 'CHRNA3', 'score': 550.77}, {'connected_gene': 'CHRNA5', 'score': 10.91}, {'connected_gene': 'GC15P078618', 'score': 0.77}, {'connected_gene': 'GC15M078021', 'score': 0.18}]
chr15	GH15I078619	78619092	78620566	0.76	[{'connected_gene': 'CHRNA3', 'score': 550.77}, {'connected_gene': 'GC15P078618', 'score': 550.77}, {'connected_gene': 'CHRNA5', 'score': 55.38}, {'connected_gene': 'GC15M078021', 'score': 0.18}]
chr15	GH15I078909	78909859	78910528	0.94	[{'connected_gene': 'MORF4L1', 'score': 7.69}, {'connected_gene': 'CHRNA5', 'score': 6.1}, {'connected_gene': 'ENSG00000279235', 'score': 0.77}, {'connected_gene': 'CTSH', 'score': 0.28}]
chr15	GH15I078754	78754331	78759028	1.45	[{'connected_gene': 'LOC105370914', 'score': 550.77}, {'connected_gene': 'LOC646934', 'score': 14.21}, {'connected_gene': 'ADAMTS7P3', 'score': 11.97}, {'connected_gene': 'CHRNA5', 'score': 10.81}, {'connected_gene': 'CTSH', 'score': 4.86}, {'connected_gene': 'PIR36295', 'score': 0.77}, {'connected_gene': 'PIR58582', 'score': 0.77}]
chr15	GH15I078750	78750309	78751768	1.25	[{'connected_gene': 'PIR31454', 'score': 550.77}, {'connected_gene': 'LOC646938', 'score': 550.77}, {'connected_gene': 'ENSG00000273512', 'score': 550.77}, {'connected_gene': 'LOC646934', 'score': 15.83}, {'connected_gene': 'CHRNA5', 'score': 13.4}, {'connected_gene': 'ADAMTS7P3', 'score': 11.97}]
chr15	GH15I078737	78737835	78738803	0.86	[{'connected_gene': 'PIR57186', 'score': 550.77}, {'connected_gene': 'GC15P078739', 'score': 550.77}, {'connected_gene': 'PIR39383', 'score': 550.77}, {'connected_gene': 'LOC646934', 'score': 16.69}, {'connected_gene': 'CHRNA5', 'score': 14.32}, {'connected_gene': 'ADAMTS7P3', 'score': 11.54}, {'connected_gene': 'CTSH', 'score': 4.91}, {'connected_gene': 'DNM1P37', 'score': 0.77}]
chr15	GH15I078714	78714595	78716783	0.72	[{'connected_gene': 'ENSG00000259562', 'score': 24.59}, {'connected_gene': 'LOC646934', 'score': 18.71}, {'connected_gene': 'CHRNA5', 'score': 14.74}, {'connected_gene': 'IREB2', 'score': 12.9}, {'connected_gene': 'MORF4L1', 'score': 11.07}, {'connected_gene': 'ADAMTS7', 'score': 11.07}, {'connected_gene': 'WDR61', 'score': 10.67}, {'connected_gene': 'TBC1D2B', 'score': 10.58}, {'connected_gene': 'ENSG00000260988', 'score': 10.38}, {'connected_gene': 'CTSH', 'score': 4.78}, {'connected_gene': 'LOC105370913', 'score': 0.39}, {'connected_gene': 'CHRNB4', 'score': 0.39}, {'connected_gene': 'GC15M078021', 'score': 0.37}]
chr15	GH15I078417	78417922	78420045	0.82	[{'connected_gene': 'ENSG00000259562', 'score': 70.62}, {'connected_gene': 'IREB2', 'score': 49.74}, {'connected_gene': 'TBC1D2B', 'score': 33.09}, {'connected_gene': 'WDR61', 'score': 20.99}, {'connected_gene': 'ENSG00000259322', 'score': 11.81}, {'connected_gene': 'CRABP1', 'score': 11.68}, {'connected_gene': 'CHRNA5', 'score': 11.32}, {'connected_gene': 'HMG20A', 'score': 9.73}, {'connected_gene': 'PSMA4', 'score': 7.03}, {'connected_gene': 'ENSG00000259413', 'score': 0.28}, {'connected_gene': 'RWDD1P1', 'score': 0.28}, {'connected_gene': 'GC15M078021', 'score': 0.06}]