PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000560035	[[34260920, 34261351], [34354843, 34354984]]	[[34354918, 34354984]]
ENST00000383263	[[34261088, 34261351], [34338740, 34339072], [34354843, 34357291]]	[[34354918, 34356517]]
ENST00000557872	[[34310427, 34310666], [34354843, 34357291]]	[[34354918, 34356517]]
NM_001320917	[[34260514, 34261351], [34354843, 34357295]]	[[34354918, 34356517]]
NM_012125	[[34261088, 34261351], [34338740, 34339072], [34354843, 34357287]]	[[34354918, 34356517]]

Promoter

Chrom	Start	End	Description
chr15	34260460	34260472	CAGE_peak_2_at_CHRM5_5end
chr15	34260686	34260710	CAGE_peak_1_at_CHRM5_5end
chr15	34260755	34260766	CAGE_peak_3_at_CHRM5_5end
chr15	34338836	34338844	CAGE_peak_4_at_CHRM5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I034055	34055217	34057854	0.58	[{'connected_gene': 'AVEN', 'score': 12.37}, {'connected_gene': 'KATNBL1', 'score': 11.74}, {'connected_gene': 'EMC4', 'score': 10.94}, {'connected_gene': 'GC15M034069', 'score': 0.39}, {'connected_gene': 'ENSG00000259505', 'score': 0.2}, {'connected_gene': 'CHRM5', 'score': 0.17}]
chr15	GH15I034046	34046428	34049829	0.97	[{'connected_gene': 'AVEN', 'score': 16.07}, {'connected_gene': 'CHRM5', 'score': 8.86}, {'connected_gene': 'GC15M034069', 'score': 0.34}, {'connected_gene': 'ENSG00000259505', 'score': 0.22}]
chr15	GH15I034037	34037800	34040580	1.93	[{'connected_gene': 'AVEN', 'score': 564.82}, {'connected_gene': 'GC15M034069', 'score': 0.29}, {'connected_gene': 'ENSG00000259505', 'score': 0.25}, {'connected_gene': 'CHRM5', 'score': 0.19}]
chr15	GH15I033984	33984753	33986132	0.84	[{'connected_gene': 'NUTM1', 'score': 21.61}, {'connected_gene': 'CHRM5', 'score': 12.73}, {'connected_gene': 'AVEN', 'score': 11.28}, {'connected_gene': 'ENSG00000259505', 'score': 0.44}, {'connected_gene': 'ENSG00000278472', 'score': 0.39}]
chr15	GH15I034000	34000191	34000250	0.5	[{'connected_gene': 'CHRM5', 'score': 550.29}, {'connected_gene': 'AVEN', 'score': 10.85}, {'connected_gene': 'ENSG00000259505', 'score': 0.44}, {'connected_gene': 'GC15M034069', 'score': 0.2}]
chr15	GH15I033956	33956040	33956189	0.64	[{'connected_gene': 'CHRM5', 'score': 0.39}, {'connected_gene': 'GC15M033869', 'score': 0.17}, {'connected_gene': 'AVEN', 'score': 0.13}]
chr15	GH15I034011	34011229	34012257	0.2	[{'connected_gene': 'CHRM5', 'score': 8.38}, {'connected_gene': 'ENSG00000259505', 'score': 0.34}, {'connected_gene': 'GC15M034069', 'score': 0.22}, {'connected_gene': 'AVEN', 'score': 0.21}]
chr15	GH15I033957	33956520	33956669	0.57	[{'connected_gene': 'CHRM5', 'score': 0.39}, {'connected_gene': 'GC15M033869', 'score': 0.17}, {'connected_gene': 'AVEN', 'score': 0.13}]
chr15	GH15I033968	33968839	33968898	0.7	[{'connected_gene': 'CHRM5', 'score': 550.77}, {'connected_gene': 'ENSG00000278472', 'score': 0.77}, {'connected_gene': 'AVEN', 'score': 0.14}]
chr15	GH15I033976	33976417	33978229	0.2	[{'connected_gene': 'ENSG00000278472', 'score': 0.77}, {'connected_gene': 'CHRM5', 'score': 0.44}, {'connected_gene': 'ENSG00000259505', 'score': 0.39}, {'connected_gene': 'AVEN', 'score': 0.15}]
chr15	GH15I033915	33915520	33916549	0.72	[{'connected_gene': 'GC15M033869', 'score': 0.25}, {'connected_gene': 'CHRM5', 'score': 0.23}, {'connected_gene': 'AVEN', 'score': 0.1}]
chr15	GH15I033991	33991213	33992483	0.31	[{'connected_gene': 'ENSG00000259505', 'score': 550.77}, {'connected_gene': 'CHRM5', 'score': 11.44}, {'connected_gene': 'AVEN', 'score': 10.88}, {'connected_gene': 'GC15M034069', 'score': 0.18}]
chr15	GH15I033979	33979276	33980745	0.38	[{'connected_gene': 'ENSG00000278472', 'score': 0.44}, {'connected_gene': 'CHRM5', 'score': 0.39}, {'connected_gene': 'ENSG00000259505', 'score': 0.39}, {'connected_gene': 'AVEN', 'score': 0.16}]
chr15	GH15I033971	33971853	33972161	0.59	[{'connected_gene': 'ENSG00000278472', 'score': 550.77}, {'connected_gene': 'CHRM5', 'score': 6.51}, {'connected_gene': 'NUTM1', 'score': 2.54}, {'connected_gene': 'AVEN', 'score': 0.15}]