PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr9	34620462	34620513	CAGE_peak_1_at_DCTN3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I034452	34452223	34452410	0.22	[{'connected_gene': 'ENHO', 'score': 12.23}, {'connected_gene': 'CNTFR', 'score': 11.78}, {'connected_gene': 'RPP25L', 'score': 11.01}, {'connected_gene': 'ENSG00000230729', 'score': 10.73}, {'connected_gene': 'DCTN3', 'score': 9.77}, {'connected_gene': 'NUDT2', 'score': 6.5}, {'connected_gene': 'ARID3C', 'score': 5.97}, {'connected_gene': 'FAM219A', 'score': 1.82}, {'connected_gene': 'DNAI1', 'score': 0.44}, {'connected_gene': 'C9orf24', 'score': 0.23}]
chr9	GH09I034430	34430863	34431012	0.52	[{'connected_gene': 'DNAI1', 'score': 12.28}, {'connected_gene': 'FAM219A', 'score': 12.28}, {'connected_gene': 'ENSG00000230729', 'score': 11.29}, {'connected_gene': 'RPP25L', 'score': 10.99}, {'connected_gene': 'ENHO', 'score': 10.72}, {'connected_gene': 'ARID3C', 'score': 10.61}, {'connected_gene': 'SIGMAR1', 'score': 10.61}, {'connected_gene': 'GALT', 'score': 10.61}, {'connected_gene': 'DCTN3', 'score': 10.32}, {'connected_gene': 'C9orf24', 'score': 0.29}]
chr9	GH09I034431	34431083	34431232	0.59	[{'connected_gene': 'DNAI1', 'score': 12.28}, {'connected_gene': 'FAM219A', 'score': 12.28}, {'connected_gene': 'ENSG00000230729', 'score': 11.29}, {'connected_gene': 'RPP25L', 'score': 10.99}, {'connected_gene': 'ENHO', 'score': 10.72}, {'connected_gene': 'ARID3C', 'score': 10.61}, {'connected_gene': 'SIGMAR1', 'score': 10.61}, {'connected_gene': 'GALT', 'score': 10.61}, {'connected_gene': 'DCTN3', 'score': 10.32}, {'connected_gene': 'C9orf24', 'score': 0.29}]
chr9	GH09I034645	34645955	34648591	2.06	[{'connected_gene': 'GALT', 'score': 568.66}, {'connected_gene': 'ENSG00000258728', 'score': 550.77}, {'connected_gene': 'PIGO', 'score': 11.18}, {'connected_gene': 'DCTN3', 'score': 11.12}, {'connected_gene': 'ENSG00000228352', 'score': 10.85}, {'connected_gene': 'SIGMAR1', 'score': 5.74}, {'connected_gene': 'IL11RA', 'score': 0.77}]
chr9	GH09I034573	34573699	34575506	0.2	[{'connected_gene': 'GALT', 'score': 23.49}, {'connected_gene': 'ENSG00000232983', 'score': 13.56}, {'connected_gene': 'RPP25L', 'score': 11.62}, {'connected_gene': 'ENHO', 'score': 11.17}, {'connected_gene': 'ENSG00000230729', 'score': 11.0}, {'connected_gene': 'DCTN3', 'score': 10.42}, {'connected_gene': 'ARID3C', 'score': 10.4}, {'connected_gene': 'SIGMAR1', 'score': 10.37}, {'connected_gene': 'NUDT2', 'score': 4.49}, {'connected_gene': 'GC09P034579', 'score': 0.77}, {'connected_gene': 'CNTFR-AS1', 'score': 0.44}, {'connected_gene': 'LOC105376023', 'score': 0.44}, {'connected_gene': 'CNTFR', 'score': 0.37}]
chr9	GH09I034437	34437463	34437632	0.62	[{'connected_gene': 'FAM219A', 'score': 12.3}, {'connected_gene': 'NUDT2', 'score': 11.53}, {'connected_gene': 'ENSG00000230729', 'score': 11.31}, {'connected_gene': 'RPP25L', 'score': 10.99}, {'connected_gene': 'ENHO', 'score': 10.73}, {'connected_gene': 'ARID3C', 'score': 10.62}, {'connected_gene': 'SIGMAR1', 'score': 10.61}, {'connected_gene': 'GALT', 'score': 10.61}, {'connected_gene': 'DCTN3', 'score': 10.32}, {'connected_gene': 'DNAI1', 'score': 0.37}, {'connected_gene': 'C9orf24', 'score': 0.28}]
chr9	GH09I034450	34450956	34451821	0.72	[{'connected_gene': 'RPP25L', 'score': 11.0}, {'connected_gene': 'ENHO', 'score': 10.97}, {'connected_gene': 'ENSG00000230729', 'score': 10.72}, {'connected_gene': 'CNTFR', 'score': 10.31}, {'connected_gene': 'DCTN3', 'score': 9.77}, {'connected_gene': 'FAM219A', 'score': 6.12}, {'connected_gene': 'DNAI1', 'score': 0.44}, {'connected_gene': 'C9orf24', 'score': 0.23}]
chr9	GH09I034619	34619619	34621153	1.88	[{'connected_gene': 'DCTN3', 'score': 550.77}, {'connected_gene': 'UBAP2', 'score': 25.59}, {'connected_gene': 'FAM205A', 'score': 12.03}, {'connected_gene': 'RPP25L', 'score': 11.83}, {'connected_gene': 'C9orf131', 'score': 10.73}, {'connected_gene': 'ATP8B5P', 'score': 10.3}, {'connected_gene': 'VCP', 'score': 10.1}, {'connected_gene': 'SIGMAR1', 'score': 6.85}]
chr9	GH09I035525	35525296	35527599	1.16	[{'connected_gene': 'DCTN3', 'score': 9.76}, {'connected_gene': 'CCDC107', 'score': 5.03}, {'connected_gene': 'GBA2', 'score': 4.86}, {'connected_gene': 'RPL36AP33', 'score': 0.37}, {'connected_gene': 'PIR61372', 'score': 0.34}, {'connected_gene': 'RUSC2', 'score': 0.28}]
chr9	GH09I034441	34441001	34441200	0.2	[{'connected_gene': 'ENSG00000232983', 'score': 11.27}, {'connected_gene': 'CNTFR-AS1', 'score': 11.26}, {'connected_gene': 'RPP25L', 'score': 10.76}, {'connected_gene': 'ENHO', 'score': 10.73}, {'connected_gene': 'ARID3C', 'score': 10.37}, {'connected_gene': 'ENSG00000230729', 'score': 10.26}, {'connected_gene': 'DCTN3', 'score': 10.21}, {'connected_gene': 'DNAI1', 'score': 0.37}, {'connected_gene': 'FAM219A', 'score': 0.37}, {'connected_gene': 'C9orf24', 'score': 0.26}]
chr9	GH09I034575	34575665	34580790	0.77	[{'connected_gene': 'GC09P034579', 'score': 550.77}, {'connected_gene': 'GC09P034580', 'score': 550.77}, {'connected_gene': 'GALT', 'score': 26.13}, {'connected_gene': 'RPP25L', 'score': 22.39}, {'connected_gene': 'ENSG00000230074', 'score': 15.55}, {'connected_gene': 'ENHO', 'score': 15.51}, {'connected_gene': 'FAM219A', 'score': 14.09}, {'connected_gene': 'ENSG00000232983', 'score': 13.54}, {'connected_gene': 'ARID3C', 'score': 12.12}, {'connected_gene': 'CNTFR', 'score': 11.37}, {'connected_gene': 'ENSG00000230729', 'score': 10.98}, {'connected_gene': 'SIGMAR1', 'score': 10.74}, {'connected_gene': 'DNAI1', 'score': 10.51}, {'connected_gene': 'DCTN3', 'score': 10.44}, {'connected_gene': 'IL11RA', 'score': 10.15}, {'connected_gene': 'CCL19', 'score': 9.62}, {'connected_gene': 'DNAJB5', 'score': 4.58}, {'connected_gene': 'PHF24', 'score': 3.22}, {'connected_gene': 'LOC105376023', 'score': 0.44}, {'connected_gene': 'CNTFR-AS1', 'score': 0.39}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000472418	[[34613547, 34613868], [34614038, 34614098], [34614706, 34615008]]	None
ENST00000479399	[[34613547, 34613868], [34614038, 34616740]]	None
ENST00000421919	[[34613547, 34613868], [34614038, 34614098], [34614706, 34614765], [34617881, 34617968], [34618672, 34618757], [34620365, 34620440]]	[[34613778, 34613868], [34614038, 34614098], [34614706, 34614765], [34617881, 34617968], [34618672, 34618757], [34620365, 34620440]]
ENST00000341694	[[34613547, 34613868], [34614038, 34614195], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620471]]	[[34614075, 34614195], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620461]]
ENST00000259632	[[34613547, 34613868], [34614038, 34614098], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620477]]	[[34613778, 34613868], [34614038, 34614098], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620461]]
ENST00000378916	[[34613548, 34613868], [34614038, 34614098], [34614706, 34614765], [34617881, 34617968], [34618672, 34618757], [34620365, 34620496]]	[[34613778, 34613868], [34614038, 34614098], [34614706, 34614765], [34617881, 34617968], [34618672, 34618757], [34620365, 34620461]]
ENST00000447983	[[34613548, 34613868], [34614038, 34614098], [34614706, 34617968], [34618672, 34618757], [34620365, 34620515]]	[[34617630, 34617968], [34618672, 34618757], [34620365, 34620461]]
ENST00000477738	[[34613600, 34613898], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620465]]	[[34613778, 34613898], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620461]]
ENST00000481438	[[34613728, 34614098], [34614706, 34614737]]	None
ENST00000472074	[[34614038, 34614098], [34614706, 34614765], [34616026, 34616449]]	None
ENST00000378913	[[34614183, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620478]]	[[34614688, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620461]]
ENST00000378911	[[34617667, 34617968], [34618672, 34618757], [34620365, 34620461]]	[[34617667, 34617968], [34618672, 34618757], [34620365, 34620461]]
NM_024348	[[34613541, 34613868], [34614038, 34614195], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620520]]	[[34614075, 34614195], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620461]]
NM_001281426	[[34613541, 34613868], [34614038, 34614129], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620520]]	[[34614075, 34614129], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620461]]
NM_007234	[[34613541, 34613868], [34614038, 34614098], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620520]]	[[34613778, 34613868], [34614038, 34614098], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620461]]
NM_001281427	[[34613541, 34613898], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620520]]	[[34613778, 34613898], [34614706, 34614765], [34616026, 34616110], [34617881, 34617968], [34618672, 34618757], [34620365, 34620461]]
NM_001281425	[[34613541, 34613868], [34614038, 34614098], [34614706, 34614765], [34617881, 34617968], [34618672, 34618757], [34620365, 34620520]]	[[34613778, 34613868], [34614038, 34614098], [34614706, 34614765], [34617881, 34617968], [34618672, 34618757], [34620365, 34620461]]