PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369002	[[108188959, 108193051], [108194011, 108194116], [108197767, 108197866], [108202352, 108202454], [108204191, 108204350], [108214685, 108214859], [108215041, 108215101], [108218852, 108218935], [108222573, 108222721], [108224047, 108224202], [108225832, 108225925], [108227651, 108227784], [108227886, 108227981], [108230130, 108230239], [108232549, 108232600], [108233919, 108233978], [108234569, 108234631], [108243000, 108243113], [108246021, 108246136], [108250618, 108250718], [108279089, 108279393]]	[[108192907, 108193051], [108194011, 108194116], [108197767, 108197866], [108202352, 108202454], [108204191, 108204350], [108214685, 108214859], [108215041, 108215101], [108218852, 108218935], [108222573, 108222721], [108224047, 108224202], [108225832, 108225925], [108227651, 108227784], [108227886, 108227981], [108230130, 108230239], [108232549, 108232600], [108233919, 108233978], [108234569, 108234631], [108243000, 108243113], [108246021, 108246136], [108250618, 108250718], [108279089, 108279213]]
ENST00000429168	[[108230211, 108230239], [108232549, 108232600], [108233919, 108233978], [108234569, 108234631], [108243000, 108243113], [108246021, 108246136], [108250618, 108250718], [108278425, 108278544]]	[[108230211, 108230239], [108232549, 108232600], [108233919, 108233978], [108234569, 108234631], [108243000, 108243113], [108246021, 108246136], [108250618, 108250674]]
ENST00000484803	[[108232371, 108232600], [108233919, 108233978], [108234569, 108234631], [108243000, 108243113], [108246021, 108246136], [108250618, 108250718], [108279089, 108279135]]	None
ENST00000446496	[[108246021, 108246136], [108250618, 108250718], [108277168, 108277310], [108279089, 108279315]]	[[108277191, 108277310], [108279089, 108279213]]
ENST00000459782	[[108191968, 108193051], [108194011, 108194116], [108197767, 108198604]]	None
ENST00000473746	[[108194088, 108194116], [108197767, 108197866], [108202352, 108202454], [108204191, 108204671]]	None
ENST00000465210	[[108202163, 108202454], [108204191, 108204316]]	None
ENST00000466419	[[108214783, 108215101], [108218852, 108218935], [108222573, 108222721], [108224047, 108224104]]	None
ENST00000489455	[[108227668, 108227784], [108227886, 108227981], [108230130, 108230363]]	None
ENST00000460009	[[108275787, 108275970], [108277168, 108277310], [108279089, 108279246]]	None
NM_007214	[[108188959, 108193051], [108194011, 108194116], [108197767, 108197866], [108202352, 108202454], [108204191, 108204350], [108214685, 108214859], [108215041, 108215101], [108218852, 108218935], [108222573, 108222721], [108224047, 108224202], [108225832, 108225925], [108227651, 108227784], [108227886, 108227981], [108230130, 108230239], [108232549, 108232600], [108233919, 108233978], [108234569, 108234631], [108243000, 108243113], [108246021, 108246136], [108250618, 108250718], [108279089, 108279482]]	[[108192907, 108193051], [108194011, 108194116], [108197767, 108197866], [108202352, 108202454], [108204191, 108204350], [108214685, 108214859], [108215041, 108215101], [108218852, 108218935], [108222573, 108222721], [108224047, 108224202], [108225832, 108225925], [108227651, 108227784], [108227886, 108227981], [108230130, 108230239], [108232549, 108232600], [108233919, 108233978], [108234569, 108234631], [108243000, 108243113], [108246021, 108246136], [108250618, 108250718], [108279089, 108279213]]

Promoter

Chrom	Start	End	Description
chr6	108230222	108230242	CAGE_peak_6_at_SEC63_5end
chr6	108278456	108278473	CAGE_peak_7_at_SEC63_5end
chr6	108279263	108279284	CAGE_peak_4_at_SEC63_5end
chr6	108279288	108279308	CAGE_peak_3_at_SEC63_5end
chr6	108279309	108279366	CAGE_peak_2_at_SEC63_5end
chr6	108279369	108279422	CAGE_peak_1_at_SEC63_5end
chr6	108279467	108279526	CAGE_peak_5_at_SEC63_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I108699	108699201	108700400	1.1	[{'connected_gene': 'ZBTB24', 'score': 13.83}, {'connected_gene': 'CEP57L1', 'score': 11.79}, {'connected_gene': 'SEC63', 'score': 10.29}, {'connected_gene': 'ENSG00000271730', 'score': 9.73}, {'connected_gene': 'PIR33619', 'score': 0.39}, {'connected_gene': 'LINC00222', 'score': 0.23}]
chr6	GH06I108301	108301175	108303498	0.4	[{'connected_gene': 'SNX3', 'score': 12.41}, {'connected_gene': 'OSTM1', 'score': 10.39}, {'connected_gene': 'NR2E1', 'score': 10.38}, {'connected_gene': 'SEC63', 'score': 9.25}, {'connected_gene': 'AFG1L', 'score': 5.21}, {'connected_gene': 'RPL36AP24', 'score': 0.37}]
chr6	GH06I108476	108476641	108477190	0.4	[{'connected_gene': 'SNX3', 'score': 10.2}, {'connected_gene': 'OSTM1', 'score': 9.81}, {'connected_gene': 'NR2E1', 'score': 9.81}, {'connected_gene': 'SEC63', 'score': 9.43}, {'connected_gene': 'GC06P108423', 'score': 0.23}, {'connected_gene': 'GC06P108424', 'score': 0.23}, {'connected_gene': 'ENSG00000271608', 'score': 0.19}, {'connected_gene': 'AFG1L', 'score': 0.09}]
chr6	GH06I108541	108541801	108542469	1.26	[{'connected_gene': 'ARMC2', 'score': 10.83}, {'connected_gene': 'RNU6-653P', 'score': 10.32}, {'connected_gene': 'ARMC2-AS1', 'score': 9.6}, {'connected_gene': 'SEC63', 'score': 9.57}, {'connected_gene': 'OSTM1', 'score': 9.46}, {'connected_gene': 'NR2E1', 'score': 9.46}, {'connected_gene': 'ENSG00000271608', 'score': 0.44}, {'connected_gene': 'GC06P108423', 'score': 0.13}, {'connected_gene': 'GC06P108424', 'score': 0.13}]
chr6	GH06I107941	107941757	107941906	0.64	[{'connected_gene': 'RPL23AP50', 'score': 0.39}, {'connected_gene': 'SEC63', 'score': 0.37}, {'connected_gene': 'ENSG00000272476', 'score': 0.37}]
chr6	GH06I107972	107972030	107974028	0.72	[{'connected_gene': 'RPL23AP50', 'score': 10.99}, {'connected_gene': 'RNU6-437P', 'score': 10.99}, {'connected_gene': 'ENSG00000224987', 'score': 0.39}, {'connected_gene': 'SEC63', 'score': 0.39}]
chr6	GH06I108117	108117466	108119081	0.96	[{'connected_gene': 'NR2E1', 'score': 12.58}, {'connected_gene': 'OSTM1', 'score': 12.55}, {'connected_gene': 'SEC63', 'score': 9.48}, {'connected_gene': 'OSTM1-AS1', 'score': 0.44}, {'connected_gene': 'ENSG00000238490', 'score': 0.22}]
chr6	GH06I108133	108133393	108134876	1.12	[{'connected_gene': 'NR2E1', 'score': 12.62}, {'connected_gene': 'OSTM1', 'score': 12.57}, {'connected_gene': 'SEC63', 'score': 9.83}, {'connected_gene': 'GC06M108139', 'score': 0.44}, {'connected_gene': 'OSTM1-AS1', 'score': 0.39}]
chr6	GH06I107830	107830365	107831335	0.2	[{'connected_gene': 'SCML4', 'score': 9.79}, {'connected_gene': 'SEC63', 'score': 9.44}, {'connected_gene': 'ENSG00000280135', 'score': 0.12}]
chr6	GH06I107804	107804866	107807244	0.38	[{'connected_gene': 'SCML4', 'score': 25.2}, {'connected_gene': 'SEC63', 'score': 9.8}, {'connected_gene': 'ENSG00000280135', 'score': 0.14}]
chr6	GH06I107847	107847801	107849000	1.41	[{'connected_gene': 'SCML4', 'score': 556.87}, {'connected_gene': 'SEC63', 'score': 16.43}, {'connected_gene': 'ENSG00000280135', 'score': 0.11}]
chr6	GH06I107819	107819760	107825633	2.14	[{'connected_gene': 'SCML4', 'score': 595.93}, {'connected_gene': 'SEC63', 'score': 10.39}, {'connected_gene': 'ENSG00000280135', 'score': 0.13}]
chr6	GH06I108293	108293927	108296308	2.1	[{'connected_gene': 'AFG1L', 'score': 556.08}, {'connected_gene': 'SNX3', 'score': 12.45}, {'connected_gene': 'SEC63', 'score': 9.92}, {'connected_gene': 'RPL36AP24', 'score': 0.34}]
chr6	GH06I108555	108555734	108567589	2.7	[{'connected_gene': 'FOXO3', 'score': 565.18}, {'connected_gene': 'PIR59886', 'score': 550.77}, {'connected_gene': 'ZBTB24', 'score': 54.91}, {'connected_gene': 'SMPD2', 'score': 20.13}, {'connected_gene': 'CD164', 'score': 11.11}, {'connected_gene': 'RNU6-653P', 'score': 10.69}, {'connected_gene': 'ENSG00000271730', 'score': 10.2}, {'connected_gene': 'SEC63', 'score': 9.89}, {'connected_gene': 'LINC00222', 'score': 5.03}, {'connected_gene': 'SESN1', 'score': 4.0}, {'connected_gene': 'OSTM1', 'score': 1.13}, {'connected_gene': 'GC06M108618', 'score': 0.22}]
chr6	GH06I108732	108732095	108739308	1.47	[{'connected_gene': 'SEC63', 'score': 10.84}, {'connected_gene': 'ZBTB24', 'score': 10.76}, {'connected_gene': 'CEP57L1', 'score': 10.76}, {'connected_gene': 'FOXO3', 'score': 2.9}, {'connected_gene': 'LINC00222', 'score': 0.37}, {'connected_gene': 'PIR33619', 'score': 0.23}]
chr6	GH06I108001	108001216	108004326	1.11	[{'connected_gene': 'SEC63', 'score': 16.76}, {'connected_gene': 'RPL3P7', 'score': 0.77}, {'connected_gene': 'MTHFD2P3', 'score': 0.37}]
chr6	GH06I107954	107954426	107959760	2.45	[{'connected_gene': 'SEC63', 'score': 550.77}, {'connected_gene': 'ENSG00000272476', 'score': 550.77}, {'connected_gene': 'SCML4', 'score': 5.91}, {'connected_gene': 'RPL23AP50', 'score': 0.31}]
chr6	GH06I107964	107964117	107966856	1.19	[{'connected_gene': 'SEC63', 'score': 11.25}, {'connected_gene': 'ENSG00000272476', 'score': 7.3}, {'connected_gene': 'SCML4', 'score': 5.22}, {'connected_gene': 'ENSG00000224987', 'score': 0.34}]
chr6	GH06I107987	107987428	107989052	0.46	[{'connected_gene': 'SEC63', 'score': 11.87}, {'connected_gene': 'MTHFD2P3', 'score': 0.77}, {'connected_gene': 'RPL3P7', 'score': 0.37}]
chr6	GH06I107990	107990095	107992649	0.94	[{'connected_gene': 'SEC63', 'score': 11.85}, {'connected_gene': 'MTHFD2P3', 'score': 0.44}, {'connected_gene': 'RPL3P7', 'score': 0.39}]
chr6	GH06I107894	107894322	107896159	0.56	[{'connected_gene': 'SEC63', 'score': 10.73}, {'connected_gene': 'GC06P107867', 'score': 0.31}, {'connected_gene': 'GC06P107932', 'score': 0.29}]
chr6	GH06I108545	108545703	108547764	0.43	[{'connected_gene': 'RNU6-653P', 'score': 10.54}, {'connected_gene': 'NR2E1', 'score': 9.53}, {'connected_gene': 'OSTM1', 'score': 9.53}, {'connected_gene': 'SEC63', 'score': 9.26}, {'connected_gene': 'ENSG00000271608', 'score': 0.77}, {'connected_gene': 'GC06P108423', 'score': 0.13}, {'connected_gene': 'GC06P108424', 'score': 0.13}]
chr6	GH06I107952	107952717	107952866	0.91	[{'connected_gene': 'ENSG00000272476', 'score': 0.77}, {'connected_gene': 'SEC63', 'score': 0.44}, {'connected_gene': 'RPL23AP50', 'score': 0.34}]
chr6	GH06I108009	108009673	108010590	0.31	[{'connected_gene': 'PIR60649', 'score': 550.77}, {'connected_gene': 'SEC63', 'score': 11.0}, {'connected_gene': 'NR2E1', 'score': 10.2}, {'connected_gene': 'OSTM1', 'score': 10.19}, {'connected_gene': 'LOC105377929', 'score': 5.3}, {'connected_gene': 'GC06P108038', 'score': 0.31}]
chr6	GH06I107867	107867137	107867226	0.66	[{'connected_gene': 'GC06P107867', 'score': 550.77}, {'connected_gene': 'SEC63', 'score': 10.38}, {'connected_gene': 'SCML4', 'score': 0.37}]
chr6	GH06I107981	107980177	107980326	0.63	[{'connected_gene': 'ENSG00000224987', 'score': 0.44}, {'connected_gene': 'SEC63', 'score': 0.34}]
chr6	GH06I107980	107980417	107980586	0.69	[{'connected_gene': 'ENSG00000224987', 'score': 0.44}, {'connected_gene': 'SEC63', 'score': 0.34}]