PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369075	[[121652222, 121652457], [121657938, 121658471], [121662310, 121662521], [121663595, 121663789], [121668552, 121668642], [121671555, 121671676], [121674241, 121674331], [121675259, 121675401], [121677347, 121677556], [121677904, 121678023], [121678955, 121679108], [121680400, 121680496], [121685547, 121685739], [121689118, 121689274], [121689840, 121689943], [121691644, 121691830], [121692516, 121692679], [121693197, 121693299], [121700097, 121701658]]	[[121652294, 121652457], [121657938, 121658471], [121662310, 121662521], [121663595, 121663789], [121668552, 121668642], [121671555, 121671676], [121674241, 121674331], [121675259, 121675401], [121677347, 121677556], [121677904, 121678023], [121678955, 121679108], [121680400, 121680496], [121685547, 121685739], [121689118, 121689274], [121689840, 121689943], [121691644, 121691830], [121692516, 121692679], [121693197, 121693279]]
ENST00000543134	[[121652241, 121652457], [121662310, 121662521], [121663595, 121663789], [121668552, 121668642], [121671555, 121671676], [121674241, 121674331], [121675259, 121675401], [121677347, 121677556], [121677904, 121678023], [121678955, 121679108], [121680400, 121680496], [121685547, 121685739], [121689118, 121689274], [121689840, 121689943], [121691644, 121691830], [121692516, 121692679], [121693197, 121693299], [121700097, 121700246]]	[[121652394, 121652457], [121662310, 121662521], [121663595, 121663789], [121668552, 121668642], [121671555, 121671676], [121674241, 121674331], [121675259, 121675401], [121677347, 121677556], [121677904, 121678023], [121678955, 121679108], [121680400, 121680496], [121685547, 121685739], [121689118, 121689274], [121689840, 121689943], [121691644, 121691830], [121692516, 121692679], [121693197, 121693279]]
ENST00000470478	[[121652256, 121652457], [121657755, 121657839]]	None
ENST00000442952	[[121662318, 121662521], [121663595, 121664174]]	[[121662318, 121662521], [121663595, 121663852]]
ENST00000446561	[[121662412, 121662521], [121663595, 121663789], [121671555, 121671676], [121674241, 121674331], [121675259, 121675327]]	[[121662412, 121662521], [121663595, 121663789], [121671555, 121671676], [121674241, 121674331], [121675259, 121675327]]
ENST00000462222	[[121674011, 121674331], [121675259, 121675401], [121677347, 121677437]]	None
ENST00000475542	[[121689156, 121689274], [121691644, 121691830], [121692516, 121692679], [121693197, 121693282]]	None
ENST00000483890	[[121700692, 121700820], [121701685, 121702014]]	None
NR_037771	[[121652084, 121652457], [121662310, 121662521], [121663595, 121663789], [121668552, 121668642], [121671555, 121671676], [121674241, 121674331], [121675259, 121675401], [121677347, 121677556], [121677904, 121678023], [121678955, 121679108], [121680400, 121680496], [121685547, 121685739], [121689118, 121689274], [121689840, 121689943], [121691644, 121691830], [121692516, 121692679], [121693197, 121693299], [121700097, 121704170]]	None
NM_007190	[[121652084, 121652457], [121657938, 121658471], [121662310, 121662521], [121663595, 121663789], [121668552, 121668642], [121671555, 121671676], [121674241, 121674331], [121675259, 121675401], [121677347, 121677556], [121677904, 121678023], [121678955, 121679108], [121680400, 121680496], [121685547, 121685739], [121689118, 121689274], [121689840, 121689943], [121691644, 121691830], [121692516, 121692679], [121693197, 121693299], [121700097, 121704170]]	[[121652294, 121652457], [121657938, 121658471], [121662310, 121662521], [121663595, 121663789], [121668552, 121668642], [121671555, 121671676], [121674241, 121674331], [121675259, 121675401], [121677347, 121677556], [121677904, 121678023], [121678955, 121679108], [121680400, 121680496], [121685547, 121685739], [121689118, 121689274], [121689840, 121689943], [121691644, 121691830], [121692516, 121692679], [121693197, 121693279]]

Promoter

Chrom	Start	End	Description
chr10	121652104	121652115	CAGE_peak_3_at_SEC23IP_5end
chr10	121652124	121652136	CAGE_peak_4_at_SEC23IP_5end
chr10	121652192	121652203	CAGE_peak_2_at_SEC23IP_5end
chr10	121652204	121652286	CAGE_peak_1_at_SEC23IP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I119686	119686036	119689798	1.43	[{'connected_gene': 'BAG3', 'score': 23.35}, {'connected_gene': 'TIAL1', 'score': 17.07}, {'connected_gene': 'SEC23IP', 'score': 16.98}, {'connected_gene': 'RPL17P36', 'score': 16.11}, {'connected_gene': 'RPL21P16', 'score': 10.47}, {'connected_gene': 'TXNP1', 'score': 8.62}, {'connected_gene': 'INPP5F', 'score': 8.18}]
chr10	GH10I119650	119650584	119660678	2.72	[{'connected_gene': 'BAG3', 'score': 568.34}, {'connected_gene': 'TIAL1', 'score': 21.86}, {'connected_gene': 'SEC23IP', 'score': 20.53}, {'connected_gene': 'INPP5F', 'score': 11.7}, {'connected_gene': 'MCMBP', 'score': 10.82}, {'connected_gene': 'GRK5', 'score': 1.18}, {'connected_gene': 'TXNP1', 'score': 0.31}]
chr10	GH10I119078	119078210	119082192	2.26	[{'connected_gene': 'EIF3A', 'score': 550.77}, {'connected_gene': 'GC10P119080', 'score': 550.77}, {'connected_gene': 'TIAL1', 'score': 24.87}, {'connected_gene': 'SEC23IP', 'score': 23.99}, {'connected_gene': 'MCMBP', 'score': 21.83}, {'connected_gene': 'NANOS1', 'score': 9.97}, {'connected_gene': 'RN7SL749P', 'score': 4.76}, {'connected_gene': 'ENSG00000222588', 'score': 0.37}]
chr10	GH10I119871	119871000	119874233	2.01	[{'connected_gene': 'MCMBP', 'score': 563.16}, {'connected_gene': 'SEC23IP', 'score': 18.88}, {'connected_gene': 'TIAL1', 'score': 16.31}, {'connected_gene': 'WDR11', 'score': 9.76}, {'connected_gene': 'INPP5F', 'score': 8.57}, {'connected_gene': 'ENSG00000282413', 'score': 0.23}]
chr10	GH10I119891	119891514	119893918	2.08	[{'connected_gene': 'MCMBP', 'score': 557.71}, {'connected_gene': 'SEC23IP', 'score': 557.3}, {'connected_gene': 'INPP5F', 'score': 8.18}, {'connected_gene': 'MIR4682', 'score': 0.2}]
chr10	GH10I119279	119279226	119280589	0.62	[{'connected_gene': 'TIAL1', 'score': 17.39}, {'connected_gene': 'SEC23IP', 'score': 15.9}, {'connected_gene': 'MCMBP', 'score': 12.98}, {'connected_gene': 'RPL17P36', 'score': 10.76}, {'connected_gene': 'GC10P119246', 'score': 0.29}, {'connected_gene': 'LOC105378511', 'score': 0.22}, {'connected_gene': 'GRK5', 'score': 0.19}]
chr10	GH10I118947	118947201	118947600	0.85	[{'connected_gene': 'TIAL1', 'score': 16.94}, {'connected_gene': 'SEC23IP', 'score': 16.92}, {'connected_gene': 'RPL17P36', 'score': 16.28}, {'connected_gene': 'ENSG00000231104', 'score': 10.17}, {'connected_gene': 'LDHAP5', 'score': 0.39}, {'connected_gene': 'GC10P119001', 'score': 0.23}]
chr10	GH10I119219	119219503	119224252	1.21	[{'connected_gene': 'TIAL1', 'score': 31.78}, {'connected_gene': 'SEC23IP', 'score': 27.72}, {'connected_gene': 'SFXN4', 'score': 24.34}, {'connected_gene': 'RPL17P36', 'score': 19.04}, {'connected_gene': 'MCMBP', 'score': 14.29}, {'connected_gene': 'RN7SL749P', 'score': 0.44}, {'connected_gene': 'GRK5', 'score': 0.39}, {'connected_gene': 'GC10P119246', 'score': 0.34}]
chr10	GH10I119594	119594834	119598085	2.09	[{'connected_gene': 'TIAL1', 'score': 575.61}, {'connected_gene': 'LOC105378512', 'score': 550.77}, {'connected_gene': 'GC10P119597', 'score': 550.77}, {'connected_gene': 'SEC23IP', 'score': 24.02}, {'connected_gene': 'MCMBP', 'score': 21.86}, {'connected_gene': 'ENSG00000271353', 'score': 5.36}, {'connected_gene': 'RGS10', 'score': 4.96}]
chr10	GH10I120850	120850540	120852993	2.11	[{'connected_gene': 'WDR11', 'score': 628.14}, {'connected_gene': 'WDR11-AS1', 'score': 550.77}, {'connected_gene': 'SEC23IP', 'score': 28.64}, {'connected_gene': 'MCMBP', 'score': 9.77}, {'connected_gene': 'ENSG00000271670', 'score': 0.31}]
chr10	GH10I119848	119848125	119851265	0.38	[{'connected_gene': 'INPP5F', 'score': 20.17}, {'connected_gene': 'MCMBP', 'score': 17.99}, {'connected_gene': 'SEC23IP', 'score': 10.92}, {'connected_gene': 'BAG3', 'score': 10.5}, {'connected_gene': 'EIF3A', 'score': 9.16}, {'connected_gene': 'ENSG00000222588', 'score': 9.16}, {'connected_gene': 'SNORA19', 'score': 9.16}, {'connected_gene': 'ENSG00000282413', 'score': 0.29}]
chr10	GH10I119759	119759787	119762329	0.79	[{'connected_gene': 'INPP5F', 'score': 24.06}, {'connected_gene': 'MCMBP', 'score': 11.77}, {'connected_gene': 'SEC23IP', 'score': 10.84}, {'connected_gene': 'GC10P119759', 'score': 0.77}, {'connected_gene': 'RN7SL846P', 'score': 0.44}]
chr10	GH10I119783	119783358	119787606	1.46	[{'connected_gene': 'INPP5F', 'score': 27.79}, {'connected_gene': 'RPL17P36', 'score': 25.96}, {'connected_gene': 'SEC23IP', 'score': 23.41}, {'connected_gene': 'TIAL1', 'score': 16.98}, {'connected_gene': 'RPL21P16', 'score': 12.15}, {'connected_gene': 'TXNP1', 'score': 5.74}, {'connected_gene': 'RN7SL846P', 'score': 0.37}, {'connected_gene': 'GC10P119759', 'score': 0.31}, {'connected_gene': 'GC10M119816', 'score': 0.29}]
chr10	GH10I119677	119677923	119683217	1.26	[{'connected_gene': 'INPP5F', 'score': 18.97}, {'connected_gene': 'TIAL1', 'score': 17.51}, {'connected_gene': 'SEC23IP', 'score': 15.95}, {'connected_gene': 'MCMBP', 'score': 13.03}, {'connected_gene': 'RPL17P36', 'score': 10.74}, {'connected_gene': 'TXNP1', 'score': 8.67}, {'connected_gene': 'BAG3', 'score': 7.94}]
chr10	GH10I119895	119895013	119897849	1.02	[{'connected_gene': 'INPP5F', 'score': 8.92}, {'connected_gene': 'SEC23IP', 'score': 5.7}, {'connected_gene': 'MIR4682', 'score': 0.21}]
chr10	GH10I119164	119164206	119167264	2.02	[{'connected_gene': 'SFXN4', 'score': 560.01}, {'connected_gene': 'SEC23IP', 'score': 13.77}, {'connected_gene': 'RPL17P36', 'score': 13.11}, {'connected_gene': 'TIAL1', 'score': 11.44}, {'connected_gene': 'EIF3A', 'score': 10.88}, {'connected_gene': 'PRDX3', 'score': 0.39}]
chr10	GH10I119313	119313373	119320166	1.72	[{'connected_gene': 'SEC23IP', 'score': 27.76}, {'connected_gene': 'TIAL1', 'score': 21.84}, {'connected_gene': 'MCMBP', 'score': 14.29}, {'connected_gene': 'RPL17P36', 'score': 10.05}, {'connected_gene': 'LOC105378511', 'score': 0.37}, {'connected_gene': 'GC10P119246', 'score': 0.19}, {'connected_gene': 'GRK5', 'score': 0.14}]
chr10	GH10I119089	119089434	119092450	1.63	[{'connected_gene': 'SEC23IP', 'score': 23.85}, {'connected_gene': 'TIAL1', 'score': 13.1}, {'connected_gene': 'ENSG00000222588', 'score': 11.72}, {'connected_gene': 'SNORA19', 'score': 11.7}, {'connected_gene': 'NANOS1', 'score': 10.5}, {'connected_gene': 'ENSG00000271343', 'score': 0.77}, {'connected_gene': 'GC10P119080', 'score': 0.39}]
chr10	GH10I119859	119859509	119859658	0.59	[{'connected_gene': 'SEC23IP', 'score': 11.54}, {'connected_gene': 'INPP5F', 'score': 10.98}, {'connected_gene': 'BAG3', 'score': 10.37}, {'connected_gene': 'MCMBP', 'score': 0.29}, {'connected_gene': 'ENSG00000282413', 'score': 0.26}]
chr10	GH10I119919	119919452	119920442	0.58	[{'connected_gene': 'SEC23IP', 'score': 22.82}, {'connected_gene': 'INPP5F', 'score': 7.91}, {'connected_gene': 'MIR4682', 'score': 0.28}]
chr10	GH10I119312	119312929	119313078	0.9	[{'connected_gene': 'SEC23IP', 'score': 11.18}, {'connected_gene': 'LOC105378511', 'score': 0.34}, {'connected_gene': 'GC10P119246', 'score': 0.2}, {'connected_gene': 'GRK5', 'score': 0.14}]
chr10	GH10I119933	119933369	119933458	0.43	[{'connected_gene': 'SEC23IP', 'score': 10.05}, {'connected_gene': 'MIR4682', 'score': 0.31}]
chr10	GH10I119922	119922772	119922920	0.22	[{'connected_gene': 'SEC23IP', 'score': 11.15}, {'connected_gene': 'MIR4682', 'score': 0.28}]
chr10	GH10I119768	119768365	119771657	0.92	[{'connected_gene': 'RN7SL846P', 'score': 550.77}, {'connected_gene': 'INPP5F', 'score': 13.52}, {'connected_gene': 'SEC23IP', 'score': 10.93}, {'connected_gene': 'TXNP1', 'score': 6.37}, {'connected_gene': 'GC10P119759', 'score': 0.39}, {'connected_gene': 'GC10M119816', 'score': 0.25}]
chr10	GH10I119333	119333424	119338887	1.13	[{'connected_gene': 'LOC105378511', 'score': 550.77}, {'connected_gene': 'TIAL1', 'score': 17.4}, {'connected_gene': 'SEC23IP', 'score': 15.9}, {'connected_gene': 'RPL17P36', 'score': 14.56}, {'connected_gene': 'MCMBP', 'score': 12.98}, {'connected_gene': 'GC10P119246', 'score': 0.17}, {'connected_gene': 'GRK5', 'score': 0.13}]