PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000265801	[[20103675, 20107874], [20110292, 20111096], [20112347, 20112803]]	[[20107232, 20107874], [20110292, 20111096], [20112347, 20112692]]
ENST00000381569	[[20103675, 20107874], [20110292, 20111096], [20112347, 20112826], [20161250, 20161474]]	[[20107232, 20107874], [20110292, 20111096], [20112347, 20112692]]
ENST00000522290	[[20107232, 20107445], [20107622, 20107874], [20110292, 20111096], [20112347, 20112692]]	[[20107232, 20107445], [20107622, 20107874], [20110292, 20111096], [20112347, 20112692]]
NM_021020	[[20103675, 20107874], [20110292, 20111096], [20112347, 20112803]]	[[20107232, 20107874], [20110292, 20111096], [20112347, 20112692]]

Promoter

Chrom	Start	End	Description
chr8	20161443	20161462	CAGE_peak_2_at_LZTS1_5end
chr8	20161466	20161481	CAGE_peak_1_at_LZTS1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I125568	125568800	125571266	2.05	[{'connected_gene': 'EI24', 'score': 550.77}, {'connected_gene': 'FEZ1', 'score': 12.48}, {'connected_gene': 'DDX25', 'score': 8.5}, {'connected_gene': 'PUS3', 'score': 5.34}, {'connected_gene': 'RNU6-1156P', 'score': 0.77}, {'connected_gene': 'STT3A-AS1', 'score': 0.34}]
chr11	GH11I125463	125463147	125467495	0.59	[{'connected_gene': 'EI24', 'score': 10.41}, {'connected_gene': 'RNU6-1156P', 'score': 10.4}, {'connected_gene': 'GC11P125484', 'score': 0.37}, {'connected_gene': 'GC11P125442', 'score': 0.34}, {'connected_gene': 'FEZ1', 'score': 0.29}]
chr11	GH11I125490	125490883	125492107	0.31	[{'connected_gene': 'EI24', 'score': 11.11}, {'connected_gene': 'RNU6-1156P', 'score': 11.1}, {'connected_gene': 'CHEK1', 'score': 6.82}, {'connected_gene': 'LOC403312', 'score': 0.77}, {'connected_gene': 'FEZ1', 'score': 0.77}, {'connected_gene': 'GC11P125484', 'score': 0.44}]
chr11	GH11I125407	125407886	125409522	0.31	[{'connected_gene': 'PKNOX2', 'score': 10.26}, {'connected_gene': 'PKNOX2-AS1', 'score': 10.26}, {'connected_gene': 'ENSG00000255475', 'score': 9.73}, {'connected_gene': 'FEZ1', 'score': 5.57}, {'connected_gene': 'GC11P125401', 'score': 0.44}, {'connected_gene': 'GC11P125428', 'score': 0.37}]
chr8	GH08I020310	20310184	20311815	0.87	[{'connected_gene': 'INTS10', 'score': 20.2}, {'connected_gene': 'RNU6-892P', 'score': 11.11}, {'connected_gene': 'LZTS1', 'score': 0.44}, {'connected_gene': 'LOC105379314', 'score': 0.29}]
chr8	GH08I020281	20281751	20284004	0.83	[{'connected_gene': 'INTS10', 'score': 13.36}, {'connected_gene': 'LZTS1-AS1', 'score': 0.44}, {'connected_gene': 'RNA5SP257', 'score': 0.44}, {'connected_gene': 'LZTS1', 'score': 0.34}]
chr8	GH08I020206	20206679	20206996	0.52	[{'connected_gene': 'ATP6V1B2', 'score': 28.61}, {'connected_gene': 'RNU6-892P', 'score': 11.63}, {'connected_gene': 'SLC18A1', 'score': 10.72}, {'connected_gene': 'LZTS1', 'score': 10.14}, {'connected_gene': 'GC08P020230', 'score': 0.34}]
chr11	GH11I126060	126060635	126064105	2.24	[{'connected_gene': 'CDON', 'score': 556.09}, {'connected_gene': 'TIRAP', 'score': 27.29}, {'connected_gene': 'STT3A', 'score': 25.54}, {'connected_gene': 'TMEM218', 'score': 25.1}, {'connected_gene': 'FEZ1', 'score': 11.29}, {'connected_gene': 'SRPRA', 'score': 10.12}, {'connected_gene': 'PIR48177', 'score': 0.23}]
chr11	GH11I125467	125467969	125469572	0.49	[{'connected_gene': 'LOC403312', 'score': 11.47}, {'connected_gene': 'FEZ1', 'score': 11.47}, {'connected_gene': 'PATE4', 'score': 5.12}, {'connected_gene': 'GC11P125484', 'score': 0.37}, {'connected_gene': 'GC11P125442', 'score': 0.31}]
chr11	GH11I125591	125591163	125594304	2.08	[{'connected_gene': 'STT3A', 'score': 562.43}, {'connected_gene': 'STT3A-AS1', 'score': 550.77}, {'connected_gene': 'HP11014', 'score': 38.61}, {'connected_gene': 'TMEM218', 'score': 22.92}, {'connected_gene': 'CHEK1', 'score': 22.75}, {'connected_gene': 'MSANTD2', 'score': 20.59}, {'connected_gene': 'ENSG00000254509', 'score': 14.18}, {'connected_gene': 'TIRAP', 'score': 12.38}, {'connected_gene': 'ENSG00000254694', 'score': 12.23}, {'connected_gene': 'EI24', 'score': 11.93}, {'connected_gene': 'CDON', 'score': 10.0}, {'connected_gene': 'DDX25', 'score': 7.52}, {'connected_gene': 'FEZ1', 'score': 5.59}, {'connected_gene': 'PUS3', 'score': 4.47}]
chr11	GH11I125455	125455021	125456794	0.2	[{'connected_gene': 'DDX25', 'score': 9.12}, {'connected_gene': 'GC11P125442', 'score': 0.37}, {'connected_gene': 'GC11P125484', 'score': 0.31}, {'connected_gene': 'FEZ1', 'score': 0.26}]
chr11	GH11I125474	125474903	125487755	0.59	[{'connected_gene': 'FEZ1', 'score': 11.55}, {'connected_gene': 'EI24', 'score': 10.55}, {'connected_gene': 'RNU6-1156P', 'score': 10.54}, {'connected_gene': 'DDX25', 'score': 8.01}, {'connected_gene': 'PUS3', 'score': 6.66}, {'connected_gene': 'CHEK1', 'score': 5.85}, {'connected_gene': 'PATE4', 'score': 4.74}, {'connected_gene': 'GC11P125484', 'score': 0.77}, {'connected_gene': 'GC11P125442', 'score': 0.26}]
chr11	GH11I125505	125505486	125506616	0.31	[{'connected_gene': 'FEZ1', 'score': 11.76}, {'connected_gene': 'EI24', 'score': 0.21}]
chr11	GH11I125509	125509007	125510164	0.49	[{'connected_gene': 'FEZ1', 'score': 6.93}, {'connected_gene': 'EI24', 'score': 0.22}]
chr11	GH11I125457	125457568	125458650	1.31	[{'connected_gene': 'FEZ1', 'score': 5.97}, {'connected_gene': 'PKNOX2', 'score': 1.54}, {'connected_gene': 'DDX25', 'score': 1.44}, {'connected_gene': 'GC11P125442', 'score': 0.37}, {'connected_gene': 'GC11P125484', 'score': 0.31}]
chr11	GH11I125493	125493968	125496887	2.27	[{'connected_gene': 'FEZ1', 'score': 561.72}, {'connected_gene': 'LOC403312', 'score': 550.77}, {'connected_gene': 'PUS3', 'score': 5.24}, {'connected_gene': 'DDX25', 'score': 2.16}, {'connected_gene': 'PKNOX2', 'score': 1.45}]
chr11	GH11I125470	125470537	125470590	0.45	[{'connected_gene': 'FEZ1', 'score': 17.61}, {'connected_gene': 'LOC403312', 'score': 11.24}, {'connected_gene': 'PKNOX2', 'score': 1.64}, {'connected_gene': 'DDX25', 'score': 1.6}, {'connected_gene': 'GC11P125484', 'score': 0.39}, {'connected_gene': 'GC11P125442', 'score': 0.31}]
chr8	GH08I020325	20325256	20325626	0.22	[{'connected_gene': 'LZTS1', 'score': 12.14}, {'connected_gene': 'RNU6-892P', 'score': 10.63}, {'connected_gene': 'LOC105379314', 'score': 0.37}]
chr8	GH08I020353	20353190	20353439	0.43	[{'connected_gene': 'LZTS1', 'score': 11.69}, {'connected_gene': 'RNU6-892P', 'score': 11.39}, {'connected_gene': 'LOC105379314', 'score': 0.44}, {'connected_gene': 'GC08P020510', 'score': 0.1}]
chr8	GH08I020354	20353570	20353719	0.2	[{'connected_gene': 'LZTS1', 'score': 11.69}, {'connected_gene': 'RNU6-892P', 'score': 11.39}, {'connected_gene': 'LOC105379314', 'score': 0.39}, {'connected_gene': 'GC08P020510', 'score': 0.1}]
chr8	GH08I020255	20255319	20255378	0.5	[{'connected_gene': 'LZTS1', 'score': 561.34}, {'connected_gene': 'RNU6-892P', 'score': 12.73}, {'connected_gene': 'LZTS1-AS1', 'score': 0.34}]
chr8	GH08I020250	20249110	20249259	0.2	[{'connected_gene': 'LZTS1', 'score': 11.33}, {'connected_gene': 'RNU6-892P', 'score': 0.37}, {'connected_gene': 'LZTS1-AS1', 'score': 0.31}]
chr8	GH08I020248	20248870	20249019	0.2	[{'connected_gene': 'LZTS1', 'score': 11.32}, {'connected_gene': 'RNU6-892P', 'score': 0.37}, {'connected_gene': 'LZTS1-AS1', 'score': 0.31}]
chr8	GH08I020270	20270030	20270179	0.4	[{'connected_gene': 'LZTS1', 'score': 17.94}, {'connected_gene': 'RNU6-892P', 'score': 11.4}, {'connected_gene': 'LZTS1-AS1', 'score': 0.44}]
chr8	GH08I020247	20247115	20248532	0.31	[{'connected_gene': 'LZTS1', 'score': 11.69}, {'connected_gene': 'RNU6-892P', 'score': 0.37}, {'connected_gene': 'LZTS1-AS1', 'score': 0.31}]
chr8	GH08I020267	20267165	20269958	1.16	[{'connected_gene': 'LZTS1', 'score': 25.22}, {'connected_gene': 'RNU6-892P', 'score': 11.42}, {'connected_gene': 'LZTS1-AS1', 'score': 0.44}]
chr8	GH08I020264	20264394	20266098	0.86	[{'connected_gene': 'LZTS1', 'score': 24.48}, {'connected_gene': 'RNU6-892P', 'score': 11.42}, {'connected_gene': 'LZTS1-AS1', 'score': 0.39}]
chr8	GH08I020327	20327731	20330252	0.79	[{'connected_gene': 'LZTS1', 'score': 11.75}, {'connected_gene': 'LOC105379314', 'score': 0.39}]
chr8	GH08I020302	20302394	20304983	1.42	[{'connected_gene': 'LZTS1', 'score': 550.77}, {'connected_gene': 'RNA5SP257', 'score': 0.39}]
chr11	GH11I125459	125459917	125461886	0.31	[{'connected_gene': 'FEZ1', 'score': 9.26}, {'connected_gene': 'GC11P125442', 'score': 0.34}, {'connected_gene': 'GC11P125484', 'score': 0.34}]
chr11	GH11I125443	125443066	125444801	0.51	[{'connected_gene': 'FEZ1', 'score': 9.58}, {'connected_gene': 'GC11P125442', 'score': 0.77}, {'connected_gene': 'GC11P125484', 'score': 0.26}]
chr11	GH11I125434	125434268	125434282	0.45	[{'connected_gene': 'FEZ1', 'score': 1.7}, {'connected_gene': 'PIR57808', 'score': 0.77}, {'connected_gene': 'GC11P125442', 'score': 0.44}]
chr11	GH11I125447	125447725	125448669	0.4	[{'connected_gene': 'FEZ1', 'score': 9.71}, {'connected_gene': 'GC11P125442', 'score': 0.44}, {'connected_gene': 'GC11P125484', 'score': 0.28}]
chr11	GH11I125511	125511873	125517845	1.33	[{'connected_gene': 'CHEK1', 'score': 18.21}, {'connected_gene': 'FEZ1', 'score': 12.74}, {'connected_gene': 'EI24', 'score': 11.56}, {'connected_gene': 'RNU6-1156P', 'score': 11.0}, {'connected_gene': 'DDX25', 'score': 9.25}, {'connected_gene': 'SLC37A2', 'score': 4.6}]
chr11	GH11I125621	125621712	125622683	0.57	[{'connected_gene': 'CHEK1', 'score': 10.58}, {'connected_gene': 'FEZ1', 'score': 5.43}, {'connected_gene': 'STT3A-AS1', 'score': 0.31}, {'connected_gene': 'STT3A', 'score': 0.29}]
chr11	GH11I125624	125624374	125627766	2.11	[{'connected_gene': 'CHEK1', 'score': 562.92}, {'connected_gene': 'HP11014', 'score': 35.3}, {'connected_gene': 'TMEM218', 'score': 34.82}, {'connected_gene': 'TIRAP', 'score': 26.43}, {'connected_gene': 'MSANTD2', 'score': 21.8}, {'connected_gene': 'FEZ1', 'score': 15.73}, {'connected_gene': 'STT3A', 'score': 13.6}, {'connected_gene': 'CCDC15', 'score': 12.93}, {'connected_gene': 'ACRV1', 'score': 4.89}, {'connected_gene': 'PUS3', 'score': 4.8}, {'connected_gene': 'RNU2-35P', 'score': 0.34}]
chr8	GH08I020208	20208871	20210064	0.2	[{'connected_gene': 'RNU6-892P', 'score': 11.63}, {'connected_gene': 'SLC18A1', 'score': 11.08}, {'connected_gene': 'LZTS1', 'score': 10.15}, {'connected_gene': 'ATP6V1B2', 'score': 0.39}, {'connected_gene': 'GC08P020230', 'score': 0.34}]
chr8	GH08I020380	20380870	20381019	0.65	[{'connected_gene': 'RNU6-892P', 'score': 12.28}, {'connected_gene': 'LZTS1', 'score': 10.85}, {'connected_gene': 'LOC105379314', 'score': 0.28}, {'connected_gene': 'GC08P020510', 'score': 0.13}]
chr8	GH08I020377	20376330	20376499	0.7	[{'connected_gene': 'RNU6-892P', 'score': 12.79}, {'connected_gene': 'LZTS1', 'score': 10.5}, {'connected_gene': 'LOC105379314', 'score': 0.29}, {'connected_gene': 'GC08P020510', 'score': 0.12}]
chr8	GH08I020376	20376530	20376679	0.67	[{'connected_gene': 'RNU6-892P', 'score': 12.79}, {'connected_gene': 'LZTS1', 'score': 10.5}, {'connected_gene': 'LOC105379314', 'score': 0.29}, {'connected_gene': 'GC08P020510', 'score': 0.12}]
chr8	GH08I020305	20305395	20308066	0.83	[{'connected_gene': 'RNU6-892P', 'score': 10.42}, {'connected_gene': 'LZTS1', 'score': 0.77}, {'connected_gene': 'LOC105379314', 'score': 0.28}]
chr8	GH08I020308	20308259	20309204	0.2	[{'connected_gene': 'RNU6-892P', 'score': 10.39}, {'connected_gene': 'LZTS1', 'score': 0.77}, {'connected_gene': 'LOC105379314', 'score': 0.29}]
chr8	GH08I020312	20312423	20313730	0.83	[{'connected_gene': 'RNU6-892P', 'score': 11.14}, {'connected_gene': 'LZTS1', 'score': 0.44}, {'connected_gene': 'LOC105379314', 'score': 0.29}]
chr8	GH08I020263	20263390	20263539	0.51	[{'connected_gene': 'RNU6-892P', 'score': 11.76}, {'connected_gene': 'LZTS1', 'score': 11.59}, {'connected_gene': 'LZTS1-AS1', 'score': 0.39}]
chr8	GH08I020249	20249890	20250039	0.2	[{'connected_gene': 'RNU6-892P', 'score': 12.76}, {'connected_gene': 'LZTS1', 'score': 11.33}, {'connected_gene': 'LZTS1-AS1', 'score': 0.31}]
chr8	GH08I020253	20253015	20255170	0.38	[{'connected_gene': 'RNU6-892P', 'score': 12.76}, {'connected_gene': 'LZTS1', 'score': 11.34}, {'connected_gene': 'LZTS1-AS1', 'score': 0.34}]
chr8	GH08I020251	20251984	20252099	0.2	[{'connected_gene': 'RNU6-892P', 'score': 12.76}, {'connected_gene': 'LZTS1', 'score': 11.33}, {'connected_gene': 'LZTS1-AS1', 'score': 0.34}]
chr8	GH08I020261	20261710	20261799	0.63	[{'connected_gene': 'RNU6-892P', 'score': 11.71}, {'connected_gene': 'LZTS1', 'score': 11.06}, {'connected_gene': 'LZTS1-AS1', 'score': 0.39}]
chr8	GH08I020279	20279835	20280928	0.66	[{'connected_gene': 'RNU6-892P', 'score': 10.77}, {'connected_gene': 'LZTS1-AS1', 'score': 0.77}, {'connected_gene': 'RNA5SP257', 'score': 0.44}, {'connected_gene': 'LZTS1', 'score': 0.34}]
chr11	GH11I125594	125594801	125595400	0.38	[{'connected_gene': 'RNU6-1156P', 'score': 11.93}, {'connected_gene': 'EI24', 'score': 11.9}, {'connected_gene': 'CHEK1', 'score': 11.86}, {'connected_gene': 'DDX25', 'score': 8.88}, {'connected_gene': 'FEZ1', 'score': 5.64}, {'connected_gene': 'STT3A-AS1', 'score': 0.77}, {'connected_gene': 'STT3A', 'score': 0.77}]
chr11	GH11I125275	125275965	125276209	0.75	[{'connected_gene': 'RNU6-321P', 'score': 550.77}, {'connected_gene': 'PKNOX2', 'score': 2.54}, {'connected_gene': 'FEZ1', 'score': 1.43}, {'connected_gene': 'GC11M125262', 'score': 0.44}]
chr11	GH11I125437	125437776	125439355	0.2	[{'connected_gene': 'RNU6-321P', 'score': 9.28}, {'connected_gene': 'FEZ1', 'score': 8.85}, {'connected_gene': 'CHEK1', 'score': 4.63}, {'connected_gene': 'GC11P125442', 'score': 0.77}, {'connected_gene': 'PIR57808', 'score': 0.44}]
chr8	GH08I020348	20348869	20350414	0.43	[{'connected_gene': 'LOC105379314', 'score': 19.39}, {'connected_gene': 'LZTS1', 'score': 11.69}, {'connected_gene': 'RNU6-892P', 'score': 11.39}, {'connected_gene': 'GC08P020510', 'score': 0.1}]
chr8	GH08I020434	20434801	20437819	1.19	[{'connected_gene': 'LOC105379314', 'score': 16.99}, {'connected_gene': 'LZTS1', 'score': 10.15}, {'connected_gene': 'GC08P020510', 'score': 0.19}]
chr8	GH08I020378	20377387	20379943	0.31	[{'connected_gene': 'LOC105379314', 'score': 19.35}, {'connected_gene': 'RNU6-892P', 'score': 12.79}, {'connected_gene': 'LZTS1', 'score': 10.78}, {'connected_gene': 'GC08P020510', 'score': 0.12}]
chr11	GH11I126418	126418050	126428170	1.61	[{'connected_gene': 'HP11014', 'score': 28.37}, {'connected_gene': 'ST3GAL4', 'score': 16.85}, {'connected_gene': 'DCPS', 'score': 11.96}, {'connected_gene': 'FAM118B', 'score': 9.59}, {'connected_gene': 'RPUSD4', 'score': 9.59}, {'connected_gene': 'ENSG00000254694', 'score': 9.59}, {'connected_gene': 'LOC105369558', 'score': 8.8}, {'connected_gene': 'FEZ1', 'score': 5.16}, {'connected_gene': 'ENSG00000278215', 'score': 0.25}, {'connected_gene': 'KIRREL3-AS1', 'score': 0.13}, {'connected_gene': 'KIRREL3', 'score': 0.03}]
chr11	GH11I125424	125424392	125427282	0.31	[{'connected_gene': 'LOC105369549', 'score': 9.81}, {'connected_gene': 'CHEK1', 'score': 5.41}, {'connected_gene': 'HP11014', 'score': 5.25}, {'connected_gene': 'FEZ1', 'score': 4.9}, {'connected_gene': 'GC11P125428', 'score': 0.77}, {'connected_gene': 'GC11P125401', 'score': 0.31}, {'connected_gene': 'PKNOX2', 'score': 0.07}]
chr8	GH08I020276	20276591	20278115	1.18	[{'connected_gene': 'LZTS1-AS1', 'score': 550.77}, {'connected_gene': 'LZTS1', 'score': 14.43}, {'connected_gene': 'INTS10', 'score': 11.63}, {'connected_gene': 'RNU6-892P', 'score': 10.78}, {'connected_gene': 'RNA5SP257', 'score': 0.39}]
chr8	GH08I020273	20273307	20274600	0.92	[{'connected_gene': 'LZTS1-AS1', 'score': 550.77}, {'connected_gene': 'LZTS1', 'score': 26.2}, {'connected_gene': 'RNU6-892P', 'score': 11.13}]
chr8	GH08I020274	20274850	20274999	0.4	[{'connected_gene': 'LZTS1-AS1', 'score': 550.77}, {'connected_gene': 'LZTS1', 'score': 27.0}, {'connected_gene': 'RNU6-892P', 'score': 11.11}]
chr8	GH08I020294	20294374	20295602	0.43	[{'connected_gene': 'RNA5SP257', 'score': 0.77}, {'connected_gene': 'LZTS1', 'score': 0.44}]
chr8	GH08I020287	20287923	20290323	0.72	[{'connected_gene': 'RNA5SP257', 'score': 550.77}, {'connected_gene': 'LZTS1-AS1', 'score': 0.39}, {'connected_gene': 'LZTS1', 'score': 0.39}]
chr11	GH11I125453	125453928	125454783	0.54	[{'connected_gene': 'GC11P125442', 'score': 0.39}, {'connected_gene': 'GC11P125484', 'score': 0.31}, {'connected_gene': 'FEZ1', 'score': 0.26}]
chr11	GH11I125450	125450270	125450868	0.2	[{'connected_gene': 'GC11P125442', 'score': 0.44}, {'connected_gene': 'GC11P125484', 'score': 0.29}, {'connected_gene': 'FEZ1', 'score': 0.25}]
chr11	GH11I125441	125441285	125442217	0.63	[{'connected_gene': 'GC11P125442', 'score': 550.77}, {'connected_gene': 'FEZ1', 'score': 9.47}, {'connected_gene': 'GC11P125484', 'score': 0.26}]
chr11	GH11I125451	125451074	125453001	1.11	[{'connected_gene': 'GC11P125442', 'score': 0.39}, {'connected_gene': 'GC11P125484', 'score': 0.29}, {'connected_gene': 'FEZ1', 'score': 0.26}]