PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000265395	[[27565060, 27565991], [27570810, 27570967], [27577959, 27578036], [27582585, 27582719], [27668989, 27669111], [27671954, 27672064], [27689091, 27689252], [27702316, 27702614]]	[[27565832, 27565991], [27570810, 27570967], [27577959, 27578036], [27582585, 27582719], [27668989, 27669111], [27671954, 27672064], [27689091, 27689252], [27702316, 27702407]]
ENST00000428288	[[27565093, 27565991], [27570810, 27570967], [27577959, 27578036], [27582585, 27582719], [27668989, 27669111], [27671954, 27672064], [27702316, 27702487]]	[[27672035, 27672064], [27702316, 27702407]]
ENST00000425715	[[27570872, 27570967], [27577959, 27578036], [27582585, 27582719], [27668989, 27669111], [27671954, 27672060], [27687291, 27687375]]	[[27570872, 27570967], [27577959, 27578036], [27582585, 27582719], [27668989, 27669111], [27671954, 27672060], [27687291, 27687375]]
ENST00000496814	[[27688842, 27689252], [27702316, 27702476]]	None
NM_152740	[[27565058, 27565991], [27570810, 27570967], [27577959, 27578036], [27582585, 27582719], [27668989, 27669111], [27671954, 27672064], [27689091, 27689252], [27702316, 27702620]]	[[27565832, 27565991], [27570810, 27570967], [27577959, 27578036], [27582585, 27582719], [27668989, 27669111], [27671954, 27672064], [27689091, 27689252], [27702316, 27702407]]

Promoter

Chrom	Start	End	Description
chr7	27702362	27702373	CAGE_peak_3_at_HIBADH_5end
chr7	27702408	27702415	CAGE_peak_4_at_HIBADH_5end
chr7	27702419	27702438	CAGE_peak_2_at_HIBADH_5end
chr7	27702455	27702632	CAGE_peak_1_at_HIBADH_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I027872	27872005	27875689	0.69	[{'connected_gene': 'TAX1BP1', 'score': 10.03}, {'connected_gene': 'HIBADH', 'score': 5.15}, {'connected_gene': 'GC07P027880', 'score': 0.44}, {'connected_gene': 'GC07M027840', 'score': 0.31}, {'connected_gene': 'JAZF1', 'score': 0.06}]
chr7	GH07I027736	27736956	27741863	2.05	[{'connected_gene': 'TAX1BP1', 'score': 562.46}, {'connected_gene': 'LOC105375210', 'score': 550.77}, {'connected_gene': 'HIBADH', 'score': 18.92}, {'connected_gene': 'LOC442292', 'score': 4.27}]
chr7	GH07I027605	27605302	27605442	0.31	[{'connected_gene': 'TSL', 'score': 0.39}, {'connected_gene': 'HIBADH', 'score': 0.22}, {'connected_gene': 'PIR36003', 'score': 0.18}]
chr7	GH07I028290	28290437	28294209	0.94	[{'connected_gene': 'HIBADH', 'score': 5.1}, {'connected_gene': 'CREB5', 'score': 0.44}, {'connected_gene': 'PPIAP80', 'score': 0.39}]
chr7	GH07I027606	27605604	27608344	1.51	[{'connected_gene': 'HIBADH', 'score': 16.4}, {'connected_gene': 'TAX1BP1', 'score': 8.91}, {'connected_gene': 'TSL', 'score': 0.44}, {'connected_gene': 'PIR36003', 'score': 0.18}]
chr7	GH07I027693	27693601	27694189	1.08	[{'connected_gene': 'HIBADH', 'score': 11.44}, {'connected_gene': 'TAX1BP1', 'score': 0.25}, {'connected_gene': 'LOC105375211', 'score': 0.25}]
chr7	GH07I027709	27709192	27710232	0.74	[{'connected_gene': 'HIBADH', 'score': 9.04}, {'connected_gene': 'TAX1BP1', 'score': 0.31}, {'connected_gene': 'LOC105375211', 'score': 0.21}]
chr7	GH07I027714	27714341	27715782	0.6	[{'connected_gene': 'HIBADH', 'score': 19.66}, {'connected_gene': 'TAX1BP1', 'score': 18.46}, {'connected_gene': 'LOC105375210', 'score': 11.78}, {'connected_gene': 'LOC442292', 'score': 5.12}, {'connected_gene': 'LOC105375211', 'score': 0.2}]
chr7	GH07I027689	27689762	27689851	0.57	[{'connected_gene': 'HIBADH', 'score': 12.24}, {'connected_gene': 'TAX1BP1', 'score': 11.68}, {'connected_gene': 'LOC105375210', 'score': 11.67}, {'connected_gene': 'LOC105375211', 'score': 0.26}]
chr7	GH07I027515	27515657	27516734	0.38	[{'connected_gene': 'HIBADH', 'score': 16.61}, {'connected_gene': 'TAX1BP1', 'score': 8.67}, {'connected_gene': 'PIR36003', 'score': 0.39}, {'connected_gene': 'GC07P027503', 'score': 0.39}]
chr7	GH07I027608	27608740	27609371	0.66	[{'connected_gene': 'HIBADH', 'score': 13.71}, {'connected_gene': 'TSL', 'score': 0.44}, {'connected_gene': 'PIR36003', 'score': 0.18}]
chr7	GH07I027586	27586773	27587230	0.56	[{'connected_gene': 'HIBADH', 'score': 10.28}, {'connected_gene': 'TSL', 'score': 0.31}, {'connected_gene': 'PIR36003', 'score': 0.22}]
chr7	GH07I027551	27551875	27552202	0.58	[{'connected_gene': 'HIBADH', 'score': 14.92}, {'connected_gene': 'LOC442292', 'score': 6.48}, {'connected_gene': 'PIR36003', 'score': 0.34}, {'connected_gene': 'TSL', 'score': 0.21}]
chr7	GH07I027661	27661231	27664574	2.09	[{'connected_gene': 'HIBADH', 'score': 562.46}, {'connected_gene': 'EIF4HP1', 'score': 23.98}, {'connected_gene': 'HOXA7', 'score': 11.02}, {'connected_gene': 'HOXA3', 'score': 10.29}, {'connected_gene': 'LOC105375211', 'score': 0.37}]
chr7	GH07I027603	27603962	27604111	0.63	[{'connected_gene': 'HIBADH', 'score': 21.2}, {'connected_gene': 'HOXA13', 'score': 10.64}, {'connected_gene': 'HOTTIP', 'score': 10.64}, {'connected_gene': 'ENSG00000253508', 'score': 10.64}, {'connected_gene': 'TSL', 'score': 0.39}, {'connected_gene': 'PIR36003', 'score': 0.19}]
chr7	GH07I027602	27602314	27603380	0.84	[{'connected_gene': 'HIBADH', 'score': 23.1}, {'connected_gene': 'HOXA13', 'score': 10.64}, {'connected_gene': 'HOTTIP', 'score': 10.64}, {'connected_gene': 'ENSG00000253508', 'score': 10.64}, {'connected_gene': 'TSL', 'score': 0.39}, {'connected_gene': 'PIR36003', 'score': 0.19}]
chr7	GH07I027945	27945982	27947013	0.31	[{'connected_gene': 'HIBADH', 'score': 9.97}, {'connected_gene': 'ENSG00000253508', 'score': 9.65}, {'connected_gene': 'HOXA13', 'score': 9.65}, {'connected_gene': 'HOTTIP', 'score': 9.65}, {'connected_gene': 'PIR39851', 'score': 0.21}, {'connected_gene': 'PIR54187', 'score': 0.18}, {'connected_gene': 'JAZF1', 'score': 0.07}]
chr7	GH07I027712	27712143	27713387	0.62	[{'connected_gene': 'HIBADH', 'score': 11.82}, {'connected_gene': 'HOXA1', 'score': 4.36}, {'connected_gene': 'TAX1BP1', 'score': 0.31}, {'connected_gene': 'LOC105375211', 'score': 0.2}]
chr7	GH07I027784	27784400	27784800	0.96	[{'connected_gene': 'HIBADH', 'score': 11.07}, {'connected_gene': 'HOXA11-AS', 'score': 10.23}, {'connected_gene': 'HOXA10', 'score': 10.23}, {'connected_gene': 'HOXA9', 'score': 10.23}, {'connected_gene': 'HOXA11', 'score': 10.23}, {'connected_gene': 'HOTTIP', 'score': 10.2}, {'connected_gene': 'HOXA13', 'score': 10.2}, {'connected_gene': 'ENSG00000253508', 'score': 10.2}, {'connected_gene': 'GC07M027748', 'score': 0.29}, {'connected_gene': 'GC07P027829', 'score': 0.26}, {'connected_gene': 'TAX1BP1', 'score': 0.25}]
chr7	GH07I027639	27639538	27642715	0.94	[{'connected_gene': 'HIBADH', 'score': 30.52}, {'connected_gene': 'LOC105375211', 'score': 0.44}, {'connected_gene': 'TSL', 'score': 0.31}]
chr7	GH07I027676	27676604	27680022	1.33	[{'connected_gene': 'HIBADH', 'score': 13.55}, {'connected_gene': 'LOC105375210', 'score': 10.89}, {'connected_gene': 'TAX1BP1', 'score': 10.89}, {'connected_gene': 'LOC105375211', 'score': 0.29}]
chr7	GH07I027697	27697463	27699081	0.79	[{'connected_gene': 'HIBADH', 'score': 20.85}, {'connected_gene': 'LOC105375210', 'score': 11.66}, {'connected_gene': 'TAX1BP1', 'score': 11.66}, {'connected_gene': 'LOC105375211', 'score': 0.23}]
chr7	GH07I027744	27744568	27747146	1.12	[{'connected_gene': 'HIBADH', 'score': 7.82}, {'connected_gene': 'LOC105375210', 'score': 0.44}, {'connected_gene': 'TAX1BP1', 'score': 0.44}, {'connected_gene': 'GC07M027748', 'score': 0.44}]
chr7	GH07I027734	27734291	27736506	0.98	[{'connected_gene': 'HIBADH', 'score': 8.61}, {'connected_gene': 'LOC105375210', 'score': 0.77}, {'connected_gene': 'TAX1BP1', 'score': 0.77}]
chr7	GH07I027374	27374598	27376842	0.2	[{'connected_gene': 'HIBADH', 'score': 4.19}, {'connected_gene': 'LOC105375206', 'score': 0.77}, {'connected_gene': 'GC07P027363', 'score': 0.39}, {'connected_gene': 'LOC105375207', 'score': 0.39}]
chr7	GH07I027560	27560622	27561676	0.38	[{'connected_gene': 'HIBADH', 'score': 12.25}, {'connected_gene': 'EVX1-AS', 'score': 9.83}, {'connected_gene': 'ENSG00000253308', 'score': 9.83}, {'connected_gene': 'EVX1', 'score': 9.83}, {'connected_gene': 'PIR36003', 'score': 0.29}, {'connected_gene': 'TSL', 'score': 0.23}]
chr7	GH07I027942	27942847	27945872	0.49	[{'connected_gene': 'HIBADH', 'score': 9.97}, {'connected_gene': 'ENSG00000253508', 'score': 9.65}, {'connected_gene': 'HOTTIP', 'score': 9.65}, {'connected_gene': 'HOXA13', 'score': 9.65}, {'connected_gene': 'TAX1BP1', 'score': 5.14}, {'connected_gene': 'PIR39851', 'score': 0.22}, {'connected_gene': 'PIR54187', 'score': 0.17}, {'connected_gene': 'JAZF1', 'score': 0.07}]
chr7	GH07I027647	27647162	27647311	0.65	[{'connected_gene': 'LOC105375211', 'score': 550.77}, {'connected_gene': 'HIBADH', 'score': 0.37}]
chr7	GH07I027533	27533596	27533907	0.58	[{'connected_gene': 'EVX1-AS', 'score': 9.86}, {'connected_gene': 'ENSG00000253308', 'score': 9.86}, {'connected_gene': 'EVX1', 'score': 9.86}, {'connected_gene': 'PIR36003', 'score': 0.77}, {'connected_gene': 'TSL', 'score': 0.18}, {'connected_gene': 'HIBADH', 'score': 0.13}]
chr7	GH07I027534	27534261	27534366	0.22	[{'connected_gene': 'EVX1-AS', 'score': 9.86}, {'connected_gene': 'ENSG00000253308', 'score': 9.86}, {'connected_gene': 'EVX1', 'score': 9.86}, {'connected_gene': 'PIR36003', 'score': 0.44}, {'connected_gene': 'TSL', 'score': 0.18}, {'connected_gene': 'HIBADH', 'score': 0.13}]
chr7	GH07I027553	27553240	27553496	0.4	[{'connected_gene': 'PIR36003', 'score': 0.34}, {'connected_gene': 'TSL', 'score': 0.21}, {'connected_gene': 'HIBADH', 'score': 0.14}]
chr7	GH07I027546	27546817	27548032	0.38	[{'connected_gene': 'ENSG00000253308', 'score': 9.69}, {'connected_gene': 'EVX1', 'score': 9.69}, {'connected_gene': 'EVX1-AS', 'score': 9.69}, {'connected_gene': 'HIBADH', 'score': 9.01}, {'connected_gene': 'PIR36003', 'score': 0.37}, {'connected_gene': 'TSL', 'score': 0.2}]
chr7	GH07I028052	28052357	28056903	1.03	[{'connected_gene': 'GC07P028054', 'score': 550.77}, {'connected_gene': 'EVX1-AS', 'score': 9.11}, {'connected_gene': 'ENSG00000253308', 'score': 9.11}, {'connected_gene': 'EVX1', 'score': 9.11}, {'connected_gene': 'HIBADH', 'score': 1.42}, {'connected_gene': 'GC07P028046', 'score': 0.44}, {'connected_gene': 'LOC105375208', 'score': 0.37}, {'connected_gene': 'JAZF1', 'score': 0.13}]