PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000214869	[[10943113, 10943889], [10945609, 10945793], [10945931, 10946029], [10946684, 10946966]]	[[10943670, 10943889], [10945609, 10945793], [10945931, 10946029], [10946684, 10946867]]
ENST00000586835	[[10943362, 10943889], [10945494, 10945680]]	[[10943878, 10943889], [10945494, 10945680]]
ENST00000591695	[[10943488, 10943889], [10945931, 10946029], [10946684, 10946994]]	[[10943612, 10943889], [10945931, 10946029], [10946684, 10946867]]
ENST00000588259	[[10943650, 10943889], [10945609, 10945793], [10946684, 10946877]]	[[10945751, 10945793], [10946684, 10946867]]
ENST00000588289	[[10943660, 10943889], [10945609, 10945793], [10945931, 10946029], [10946278, 10946308]]	[[10943670, 10943889], [10945609, 10945639]]
ENST00000591157	[[10943660, 10943889], [10945609, 10945793], [10945966, 10946029], [10946684, 10946925]]	[[10945751, 10945793], [10945966, 10946029], [10946684, 10946867]]
ENST00000589638	[[10943726, 10943889], [10945609, 10945739], [10945931, 10946029], [10946684, 10946871]]	[[10943726, 10943889], [10945609, 10945739], [10945931, 10946029], [10946684, 10946867]]
NR_104015	[[10942742, 10943889], [10945609, 10945793], [10945931, 10946029], [10946278, 10946416]]	None
NM_006858	[[10942742, 10943889], [10945609, 10945793], [10945931, 10946029], [10946684, 10946983]]	[[10943670, 10943889], [10945609, 10945793], [10945931, 10946029], [10946684, 10946867]]

Promoter

Chrom	Start	End	Description
chr19	10946872	10946894	CAGE_peak_1_at_TMED1_5end
chr19	10946949	10947006	CAGE_peak_2_at_TMED1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I011140	11140977	11146405	2.12	[{'connected_gene': 'SPC24', 'score': 9.39}, {'connected_gene': 'DOCK6', 'score': 3.68}, {'connected_gene': 'YIPF2', 'score': 2.88}, {'connected_gene': 'TMED1', 'score': 2.47}, {'connected_gene': 'PRKCSH', 'score': 1.94}, {'connected_gene': 'CARM1', 'score': 1.62}, {'connected_gene': 'ECSIT', 'score': 1.56}, {'connected_gene': 'MIR6886', 'score': 0.29}]
chr19	GH19I010834	10834816	10837234	2.12	[{'connected_gene': 'TMED1', 'score': 550.77}, {'connected_gene': 'C19orf38', 'score': 550.77}, {'connected_gene': 'ILF3', 'score': 48.83}, {'connected_gene': 'ZNF627', 'score': 41.8}, {'connected_gene': 'ZNF441', 'score': 40.85}, {'connected_gene': 'ZNF491', 'score': 40.59}, {'connected_gene': 'KRI1', 'score': 27.64}, {'connected_gene': 'ILF3-AS1', 'score': 27.35}, {'connected_gene': 'RAVER1', 'score': 24.28}, {'connected_gene': 'QTRT1', 'score': 19.81}, {'connected_gene': 'DNMT1', 'score': 19.01}, {'connected_gene': 'ELOF1', 'score': 17.48}, {'connected_gene': 'HNRNPA1P10', 'score': 11.38}, {'connected_gene': 'EIF3G', 'score': 10.87}, {'connected_gene': 'PRKCSH', 'score': 10.64}, {'connected_gene': 'PPAN', 'score': 10.51}, {'connected_gene': 'ZNF823', 'score': 9.81}, {'connected_gene': 'ICAM1', 'score': 9.67}, {'connected_gene': 'SMARCA4', 'score': 6.87}, {'connected_gene': 'MIR6793', 'score': 0.44}]
chr19	GH19I010829	10829385	10829409	0.52	[{'connected_gene': 'MIR6793', 'score': 550.77}, {'connected_gene': 'ILF3', 'score': 10.69}, {'connected_gene': 'TMED1', 'score': 0.44}, {'connected_gene': 'DNM2', 'score': 0.14}]
chr19	GH19I010830	10829145	10829294	0.57	[{'connected_gene': 'MIR6793', 'score': 550.77}, {'connected_gene': 'ILF3', 'score': 10.69}, {'connected_gene': 'TMED1', 'score': 0.44}, {'connected_gene': 'DNM2', 'score': 0.14}]