PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000266659	[[75874459, 75874834], [75875613, 75875859], [75884185, 75884298], [75889356, 75889442], [75892473, 75892500], [75892603, 75897633]]	[[75874660, 75874834], [75875613, 75875859], [75884185, 75884298], [75889356, 75889442], [75892473, 75892500], [75892603, 75892758]]
ENST00000536703	[[75874532, 75874834], [75875613, 75875859], [75889356, 75889442], [75892473, 75893073]]	[[75874660, 75874834], [75875613, 75875859], [75889356, 75889383]]
ENST00000456650	[[75874660, 75874834], [75875613, 75875859], [75881518, 75881589], [75884185, 75884298], [75889356, 75889442], [75892473, 75892497]]	[[75874660, 75874834], [75875613, 75875859], [75881518, 75881589], [75884185, 75884298], [75889356, 75889442], [75892473, 75892497]]
ENST00000550491	[[75874983, 75875205], [75875613, 75875859], [75884185, 75884298], [75889356, 75889442]]	[[75875791, 75875859], [75884185, 75884298], [75889356, 75889442]]
NM_006851	[[75874512, 75874834], [75875613, 75875859], [75884185, 75884298], [75889356, 75889442], [75892473, 75892500], [75892603, 75895716]]	[[75874660, 75874834], [75875613, 75875859], [75884185, 75884298], [75889356, 75889442], [75892473, 75892500], [75892603, 75892758]]

Promoter

Chrom	Start	End	Description
chr12	75874525	75874549	CAGE_peak_1_at_GLIPR1_5end
chr12	75874561	75874574	CAGE_peak_3_at_GLIPR1_5end
chr12	75874580	75874611	CAGE_peak_2_at_GLIPR1_5end
chr12	75875040	75875053	CAGE_peak_6_at_GLIPR1_5end
chr12	75875067	75875110	CAGE_peak_4_at_GLIPR1_5end
chr12	75875150	75875165	CAGE_peak_5_at_GLIPR1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I075950	75950510	75956090	1.56	[{'connected_gene': 'PHLDA1', 'score': 13.19}, {'connected_gene': 'GLIPR1', 'score': 2.64}, {'connected_gene': 'RN7SL734P', 'score': 0.77}, {'connected_gene': 'ENSG00000258091', 'score': 0.31}, {'connected_gene': 'ENSG00000258077', 'score': 0.29}]
chr12	GH12I075943	75943527	75946513	1.71	[{'connected_gene': 'PHLDA1', 'score': 14.79}, {'connected_gene': 'GLIPR1', 'score': 4.71}, {'connected_gene': 'RN7SL734P', 'score': 0.39}, {'connected_gene': 'ENSG00000258091', 'score': 0.37}, {'connected_gene': 'ENSG00000258077', 'score': 0.28}]
chr12	GH12I075811	75811839	75813396	1.27	[{'connected_gene': 'PHLDA1', 'score': 4.5}, {'connected_gene': 'GLIPR1', 'score': 1.41}, {'connected_gene': 'LOC105369846', 'score': 0.29}, {'connected_gene': 'ENSG00000258091', 'score': 0.14}, {'connected_gene': 'ENSG00000258077', 'score': 0.09}]
chr12	GH12I075789	75789764	75791478	0.71	[{'connected_gene': 'PHLDA1', 'score': 9.82}, {'connected_gene': 'GLIPR1', 'score': 3.33}, {'connected_gene': 'LOC105369846', 'score': 0.44}, {'connected_gene': 'ENSG00000258091', 'score': 0.12}, {'connected_gene': 'ENSG00000258077', 'score': 0.08}]
chr12	GH12I075969	75969214	75970614	1.3	[{'connected_gene': 'PHLDA1', 'score': 12.93}, {'connected_gene': 'ENSG00000251893', 'score': 9.68}, {'connected_gene': 'GLIPR1', 'score': 4.78}, {'connected_gene': 'LOC100289143', 'score': 0.44}, {'connected_gene': 'ENSG00000258077', 'score': 0.39}]
chr12	GH12I075456	75456761	75458338	0.94	[{'connected_gene': 'GLIPR1L2', 'score': 62.94}, {'connected_gene': 'CAPS2', 'score': 14.23}, {'connected_gene': 'BBS10', 'score': 13.6}, {'connected_gene': 'GLIPR1', 'score': 12.17}, {'connected_gene': 'KRR1', 'score': 10.65}]
chr12	GH12I075388	75388512	75392449	2	[{'connected_gene': 'GLIPR1L2', 'score': 629.73}, {'connected_gene': 'CAPS2', 'score': 550.77}, {'connected_gene': 'KRR1', 'score': 17.65}, {'connected_gene': 'GLIPR1', 'score': 11.27}, {'connected_gene': 'GLIPR1L1', 'score': 0.22}]
chr12	GH12I075505	75505619	75506510	0.74	[{'connected_gene': 'GLIPR1L2', 'score': 63.56}, {'connected_gene': 'GLIPR1L1', 'score': 11.89}, {'connected_gene': 'GLIPR1', 'score': 11.23}, {'connected_gene': 'CAPS2', 'score': 10.96}, {'connected_gene': 'PHLDA1', 'score': 10.28}, {'connected_gene': 'KCNC2', 'score': 8.78}, {'connected_gene': 'KRR1', 'score': 0.44}, {'connected_gene': 'ENSG00000257497', 'score': 0.37}]
chr12	GH12I075578	75578099	75582913	0.8	[{'connected_gene': 'GLIPR1L2', 'score': 29.18}, {'connected_gene': 'ENSG00000251893', 'score': 10.93}, {'connected_gene': 'PHLDA1', 'score': 9.73}, {'connected_gene': 'KRR1', 'score': 8.5}, {'connected_gene': 'GLIPR1', 'score': 4.98}, {'connected_gene': 'PGDP2', 'score': 0.37}, {'connected_gene': 'GC12P075544', 'score': 0.28}, {'connected_gene': 'ENSG00000258077', 'score': 0.05}]
chr12	GH12I075496	75496659	75497951	0.2	[{'connected_gene': 'GLIPR1L2', 'score': 73.01}, {'connected_gene': 'KRR1', 'score': 34.87}, {'connected_gene': 'GLIPR1L1', 'score': 11.92}, {'connected_gene': 'ENSG00000257497', 'score': 11.89}, {'connected_gene': 'CAPS2', 'score': 11.33}, {'connected_gene': 'PHLDA1', 'score': 10.08}, {'connected_gene': 'GLIPR1', 'score': 0.37}]
chr12	GH12I075485	75485594	75488196	0.43	[{'connected_gene': 'GLIPR1L2', 'score': 69.89}, {'connected_gene': 'KRR1', 'score': 18.55}, {'connected_gene': 'ENSG00000257497', 'score': 16.78}, {'connected_gene': 'GLIPR1L1', 'score': 12.23}, {'connected_gene': 'CAPS2', 'score': 11.45}, {'connected_gene': 'GLIPR1', 'score': 0.44}]
chr12	GH12I075622	75622658	75624898	1.33	[{'connected_gene': 'GLIPR1L2', 'score': 27.8}, {'connected_gene': 'KRR1', 'score': 22.12}, {'connected_gene': 'ENSG00000251893', 'score': 10.37}, {'connected_gene': 'ENSG00000257497', 'score': 7.12}, {'connected_gene': 'GLIPR1', 'score': 4.68}, {'connected_gene': 'GC12P075601', 'score': 0.34}, {'connected_gene': 'RPL10P13', 'score': 0.2}, {'connected_gene': 'ENSG00000258077', 'score': 0.05}]
chr12	GH12I075476	75476175	75476375	0.57	[{'connected_gene': 'GLIPR1L2', 'score': 62.95}, {'connected_gene': 'GLIPR1', 'score': 4.66}]
chr12	GH12I075471	75471416	75473017	0.78	[{'connected_gene': 'GLIPR1L2', 'score': 62.26}, {'connected_gene': 'GLIPR1', 'score': 0.44}]
chr12	GH12I075444	75444336	75445361	1.14	[{'connected_gene': 'GLIPR1L2', 'score': 60.33}, {'connected_gene': 'GLIPR1', 'score': 0.28}]
chr12	GH12I075492	75492146	75495963	0.2	[{'connected_gene': 'KRR1', 'score': 35.82}, {'connected_gene': 'ENSG00000257497', 'score': 24.03}, {'connected_gene': 'GLIPR1L1', 'score': 11.58}, {'connected_gene': 'CAPS2', 'score': 11.15}, {'connected_gene': 'GLIPR1L2', 'score': 11.15}, {'connected_gene': 'GLIPR1', 'score': 0.39}]
chr12	GH12I075507	75507127	75507635	0.66	[{'connected_gene': 'KRR1', 'score': 37.88}, {'connected_gene': 'GLIPR1L1', 'score': 11.89}, {'connected_gene': 'GLIPR1', 'score': 11.23}, {'connected_gene': 'CAPS2', 'score': 10.96}, {'connected_gene': 'GLIPR1L2', 'score': 10.96}, {'connected_gene': 'PHLDA1', 'score': 10.28}, {'connected_gene': 'KCNC2', 'score': 8.78}, {'connected_gene': 'ENSG00000257497', 'score': 0.37}]
chr12	GH12I075508	75508283	75513161	2.54	[{'connected_gene': 'KRR1', 'score': 622.93}, {'connected_gene': 'ENSG00000257497', 'score': 23.36}, {'connected_gene': 'GLIPR1L2', 'score': 16.04}, {'connected_gene': 'GLIPR1L1', 'score': 11.89}, {'connected_gene': 'GLIPR1', 'score': 11.21}, {'connected_gene': 'CAPS2', 'score': 10.96}, {'connected_gene': 'PHLDA1', 'score': 10.28}, {'connected_gene': 'KCNC2', 'score': 8.78}]
chr12	GH12I075501	75501700	75503665	0.2	[{'connected_gene': 'KRR1', 'score': 37.99}, {'connected_gene': 'GLIPR1L2', 'score': 27.51}, {'connected_gene': 'ENSG00000257497', 'score': 23.64}, {'connected_gene': 'GLIPR1L1', 'score': 11.93}, {'connected_gene': 'GLIPR1', 'score': 11.55}, {'connected_gene': 'CAPS2', 'score': 11.49}, {'connected_gene': 'PHLDA1', 'score': 10.08}]
chr12	GH12I075493	75492037	75492106	0.42	[{'connected_gene': 'KRR1', 'score': 1.64}, {'connected_gene': 'ENSG00000257497', 'score': 0.77}, {'connected_gene': 'GLIPR1', 'score': 0.39}]
chr12	GH12I075792	75792926	75793054	0.54	[{'connected_gene': 'GLIPR1', 'score': 1.69}, {'connected_gene': 'PHLDA1', 'score': 1.4}, {'connected_gene': 'LOC105369846', 'score': 0.39}, {'connected_gene': 'ENSG00000258091', 'score': 0.12}, {'connected_gene': 'ENSG00000258077', 'score': 0.08}]
chr12	GH12I075477	75477993	75485530	2.32	[{'connected_gene': 'GLIPR1', 'score': 555.76}, {'connected_gene': 'GLIPR1L2', 'score': 73.48}, {'connected_gene': 'KRR1', 'score': 34.25}, {'connected_gene': 'GLIPR1L1', 'score': 11.77}, {'connected_gene': 'CAPS2', 'score': 11.46}, {'connected_gene': 'ENSG00000257497', 'score': 10.17}]
chr12	GH12I075448	75447041	75447210	0.49	[{'connected_gene': 'GLIPR1', 'score': 12.27}, {'connected_gene': 'GLIPR1L2', 'score': 0.22}]
chr12	GH12I075447	75447821	75447970	0.2	[{'connected_gene': 'GLIPR1', 'score': 12.27}, {'connected_gene': 'GLIPR1L2', 'score': 0.22}]
chr12	GH12I075437	75437701	75437850	0.58	[{'connected_gene': 'GLIPR1', 'score': 0.26}, {'connected_gene': 'GLIPR1L2', 'score': 0.25}]
chr12	GH12I075974	75974009	75984226	1.77	[{'connected_gene': 'ENSG00000258077', 'score': 18.59}, {'connected_gene': 'PHLDA1', 'score': 14.75}, {'connected_gene': 'NAP1L1', 'score': 10.37}, {'connected_gene': 'ENSG00000251893', 'score': 9.68}, {'connected_gene': 'GLIPR1', 'score': 4.99}, {'connected_gene': 'LOC100289143', 'score': 0.39}]
chr12	GH12I075488	75488632	75490641	1	[{'connected_gene': 'ENSG00000257497', 'score': 550.77}, {'connected_gene': 'GLIPR1L2', 'score': 61.53}, {'connected_gene': 'KRR1', 'score': 23.25}, {'connected_gene': 'GLIPR1', 'score': 0.44}]