PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000303575	[[75598172, 75601709], [75602462, 75602589], [75614366, 75614440], [75618734, 75618846], [75643057, 75643334]]	[[75601587, 75601709], [75602462, 75602589], [75614366, 75614440], [75618734, 75618846], [75643057, 75643282]]
ENST00000555873	[[75601202, 75601709], [75602462, 75602589], [75605776, 75605874], [75614366, 75614440], [75618734, 75618846], [75643057, 75643300]]	[[75605823, 75605874], [75614366, 75614440], [75618734, 75618846], [75643057, 75643282]]
ENST00000555085	[[75614257, 75614440], [75618734, 75618846], [75643057, 75643315]]	None
ENST00000556969	[[75600640, 75601709], [75602462, 75602589], [75614366, 75614484]]	None
ENST00000557670	[[75601058, 75601709], [75602462, 75602589], [75614366, 75614440], [75614535, 75614600]]	None
ENST00000555036	[[75601142, 75601709], [75602365, 75602589], [75614366, 75614463]]	None
NM_006827	[[75598170, 75601709], [75602462, 75602589], [75614366, 75614440], [75618734, 75618846], [75643057, 75643349]]	[[75601587, 75601709], [75602462, 75602589], [75614366, 75614440], [75618734, 75618846], [75643057, 75643282]]

Promoter

Chrom	Start	End	Description
chr14	75614425	75614471	CAGE_peak_2_at_TMED10_5end
chr14	75614593	75614605	CAGE_peak_13_at_TMED10_5end
chr14	75643296	75643341	CAGE_peak_1_at_TMED10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I075167	75167201	75167800	0.58	[{'connected_gene': 'ACYP1', 'score': 5.59}, {'connected_gene': 'TMED10', 'score': 0.44}, {'connected_gene': 'NEK9', 'score': 0.26}]
chr14	GH14I075163	75163239	75164413	0.31	[{'connected_gene': 'EIF2B2', 'score': 20.63}, {'connected_gene': 'ACYP1', 'score': 6.81}, {'connected_gene': 'TMED10', 'score': 0.39}, {'connected_gene': 'NEK9', 'score': 0.28}]
chr14	GH14I075162	75162399	75163173	0.38	[{'connected_gene': 'EIF2B2', 'score': 20.91}, {'connected_gene': 'ACYP1', 'score': 6.81}, {'connected_gene': 'TMED10', 'score': 0.39}, {'connected_gene': 'NEK9', 'score': 0.28}]
chr14	GH14I075133	75133848	75136534	0.43	[{'connected_gene': 'EIF2B2', 'score': 20.38}, {'connected_gene': 'ZC2HC1C', 'score': 19.36}, {'connected_gene': 'ACYP1', 'score': 6.74}, {'connected_gene': 'NEK9', 'score': 0.44}, {'connected_gene': 'ENSG00000259138', 'score': 0.44}, {'connected_gene': 'TMED10', 'score': 0.26}, {'connected_gene': 'GC14P075088', 'score': 0.25}]
chr14	GH14I075132	75132038	75133199	0.92	[{'connected_gene': 'EIF2B2', 'score': 17.54}, {'connected_gene': 'ZC2HC1C', 'score': 17.52}, {'connected_gene': 'ACYP1', 'score': 6.89}, {'connected_gene': 'NEK9', 'score': 0.44}, {'connected_gene': 'ENSG00000259138', 'score': 0.44}, {'connected_gene': 'GC14P075088', 'score': 0.26}, {'connected_gene': 'TMED10', 'score': 0.26}]
chr14	GH14I075158	75158845	75160663	0.68	[{'connected_gene': 'EIF2B2', 'score': 20.38}, {'connected_gene': 'ZC2HC1C', 'score': 17.47}, {'connected_gene': 'ACYP1', 'score': 6.7}, {'connected_gene': 'TMED10', 'score': 0.37}, {'connected_gene': 'NEK9', 'score': 0.29}]
chr14	GH14I075138	75138181	75139527	0.71	[{'connected_gene': 'EIF2B2', 'score': 20.61}, {'connected_gene': 'ZC2HC1C', 'score': 6.48}, {'connected_gene': 'NEK9', 'score': 0.39}, {'connected_gene': 'TMED10', 'score': 0.28}, {'connected_gene': 'GC14P075088', 'score': 0.23}]
chr14	GH14I075151	75151269	75152879	0.31	[{'connected_gene': 'EIF2B2', 'score': 16.78}, {'connected_gene': 'TMED10', 'score': 12.73}, {'connected_gene': 'NEK9', 'score': 10.88}, {'connected_gene': 'BATF', 'score': 10.59}, {'connected_gene': 'ACYP1', 'score': 6.85}]
chr14	GH14I075152	75152961	75154018	0.38	[{'connected_gene': 'EIF2B2', 'score': 16.16}, {'connected_gene': 'TMED10', 'score': 13.18}, {'connected_gene': 'NEK9', 'score': 11.47}, {'connected_gene': 'BATF', 'score': 10.59}, {'connected_gene': 'JDP2', 'score': 9.65}, {'connected_gene': 'ACYP1', 'score': 6.71}]
chr14	GH14I075157	75157740	75158567	0.2	[{'connected_gene': 'EIF2B2', 'score': 17.84}, {'connected_gene': 'TMED10', 'score': 0.37}, {'connected_gene': 'NEK9', 'score': 0.29}]
chr14	GH14I075159	75157258	75157407	0.69	[{'connected_gene': 'EIF2B2', 'score': 17.61}, {'connected_gene': 'TMED10', 'score': 0.37}, {'connected_gene': 'NEK9', 'score': 0.31}]
chr14	GH14I075165	75165857	75166512	0.78	[{'connected_gene': 'EIF2B2', 'score': 16.92}, {'connected_gene': 'TMED10', 'score': 0.39}, {'connected_gene': 'NEK9', 'score': 0.28}]
chr14	GH14I075161	75161449	75162007	0.2	[{'connected_gene': 'EIF2B2', 'score': 9.42}, {'connected_gene': 'TMED10', 'score': 0.39}, {'connected_gene': 'NEK9', 'score': 0.29}]
chr14	GH14I075160	75160801	75161000	0.51	[{'connected_gene': 'EIF2B2', 'score': 17.65}, {'connected_gene': 'TMED10', 'score': 0.37}, {'connected_gene': 'NEK9', 'score': 0.29}]
chr14	GH14I075170	75170002	75170600	0.4	[{'connected_gene': 'EIF2B2', 'score': 17.25}, {'connected_gene': 'TMED10', 'score': 0.44}, {'connected_gene': 'NEK9', 'score': 0.26}]
chr14	GH14I075142	75142401	75142600	0.69	[{'connected_gene': 'EIF2B2', 'score': 16.79}, {'connected_gene': 'TMED10', 'score': 12.33}, {'connected_gene': 'DPPA5P4', 'score': 11.6}, {'connected_gene': 'JDP2', 'score': 9.87}, {'connected_gene': 'NEK9', 'score': 0.37}, {'connected_gene': 'GC14P075088', 'score': 0.23}]
chr14	GH14I075146	75144651	75145678	0.6	[{'connected_gene': 'EIF2B2', 'score': 20.37}, {'connected_gene': 'TMED10', 'score': 12.3}, {'connected_gene': 'JDP2', 'score': 9.79}, {'connected_gene': 'NEK9', 'score': 0.37}, {'connected_gene': 'GC14P075088', 'score': 0.22}]
chr14	GH14I075147	75146497	75149384	1.12	[{'connected_gene': 'ZC2HC1C', 'score': 18.3}, {'connected_gene': 'EIF2B2', 'score': 16.78}, {'connected_gene': 'TMED10', 'score': 12.7}, {'connected_gene': 'NEK9', 'score': 10.88}, {'connected_gene': 'BATF', 'score': 10.59}, {'connected_gene': 'JDP2', 'score': 9.79}, {'connected_gene': 'ACYP1', 'score': 6.86}, {'connected_gene': 'GC14P075088', 'score': 0.22}]
chr14	GH14I075173	75173208	75173783	0.31	[{'connected_gene': 'ZC2HC1C', 'score': 17.33}, {'connected_gene': 'EIF2B2', 'score': 17.21}, {'connected_gene': 'TMED10', 'score': 0.77}, {'connected_gene': 'NEK9', 'score': 0.25}]
chr14	GH14I075120	75120401	75121353	0.78	[{'connected_gene': 'ZC2HC1C', 'score': 10.92}, {'connected_gene': 'MLH3', 'score': 10.9}, {'connected_gene': 'ACYP1', 'score': 10.8}, {'connected_gene': 'PGF', 'score': 10.39}, {'connected_gene': 'RPS6KL1', 'score': 10.27}, {'connected_gene': 'TMED10', 'score': 10.24}, {'connected_gene': 'RNU6-689P', 'score': 10.05}, {'connected_gene': 'JDP2', 'score': 9.91}, {'connected_gene': 'HIF1AP1', 'score': 0.77}, {'connected_gene': 'ENSG00000259138', 'score': 0.44}, {'connected_gene': 'NEK9', 'score': 0.44}, {'connected_gene': 'GC14P075088', 'score': 0.29}]
chr14	GH14I075293	75293004	75299870	2.04	[{'connected_gene': 'JDP2', 'score': 29.1}, {'connected_gene': 'TMED10', 'score': 11.88}, {'connected_gene': 'NEK9', 'score': 11.18}, {'connected_gene': 'LINC01220', 'score': 10.66}, {'connected_gene': 'BATF', 'score': 9.93}, {'connected_gene': 'FOS', 'score': 8.19}, {'connected_gene': 'DPPA5P4', 'score': 7.56}, {'connected_gene': 'SYNDIG1L', 'score': 5.43}, {'connected_gene': 'FLVCR2', 'score': 3.6}]
chr14	GH14I075309	75309837	75312434	1.32	[{'connected_gene': 'JDP2', 'score': 11.86}, {'connected_gene': 'TMED10', 'score': 11.53}, {'connected_gene': 'NEK9', 'score': 10.78}, {'connected_gene': 'MLH3', 'score': 9.89}, {'connected_gene': 'ZC2HC1C', 'score': 9.89}, {'connected_gene': 'LINC01220', 'score': 4.68}]
chr14	GH14I075307	75307791	75308100	0.8	[{'connected_gene': 'JDP2', 'score': 11.86}, {'connected_gene': 'TMED10', 'score': 11.53}, {'connected_gene': 'NEK9', 'score': 10.78}, {'connected_gene': 'MLH3', 'score': 9.89}, {'connected_gene': 'ZC2HC1C', 'score': 9.89}, {'connected_gene': 'LINC01220', 'score': 5.55}]
chr14	GH14I075154	75154983	75156520	0.38	[{'connected_gene': 'TMED10', 'score': 13.06}, {'connected_gene': 'NEK9', 'score': 10.3}, {'connected_gene': 'JDP2', 'score': 9.65}, {'connected_gene': 'EIF2B2', 'score': 4.66}]
chr14	GH14I075300	75300742	75302592	1.09	[{'connected_gene': 'TMED10', 'score': 11.88}, {'connected_gene': 'NEK9', 'score': 11.17}, {'connected_gene': 'JDP2', 'score': 10.35}, {'connected_gene': 'BATF', 'score': 9.93}, {'connected_gene': 'LINC01220', 'score': 0.44}]
chr14	GH14I075301	75300379	75300389	0.4	[{'connected_gene': 'TMED10', 'score': 11.88}, {'connected_gene': 'NEK9', 'score': 11.17}, {'connected_gene': 'JDP2', 'score': 10.35}, {'connected_gene': 'BATF', 'score': 9.93}, {'connected_gene': 'LINC01220', 'score': 0.44}]
chr14	GH14I075150	75150698	75150847	0.51	[{'connected_gene': 'TMED10', 'score': 12.7}, {'connected_gene': 'NEK9', 'score': 10.88}, {'connected_gene': 'BATF', 'score': 10.59}, {'connected_gene': 'EIF2B2', 'score': 4.63}]
chr14	GH14I075153	75150238	75150427	0.58	[{'connected_gene': 'TMED10', 'score': 12.7}, {'connected_gene': 'NEK9', 'score': 10.88}, {'connected_gene': 'BATF', 'score': 10.59}]
chr14	GH14I075168	75168410	75168980	0.52	[{'connected_gene': 'TMED10', 'score': 0.44}, {'connected_gene': 'NEK9', 'score': 0.26}]
chr14	GH14I075164	75164693	75165238	0.2	[{'connected_gene': 'TMED10', 'score': 0.39}, {'connected_gene': 'NEK9', 'score': 0.28}]
chr14	GH14I075145	75142118	75142267	0.69	[{'connected_gene': 'TMED10', 'score': 12.33}, {'connected_gene': 'DPPA5P4', 'score': 11.59}, {'connected_gene': 'JDP2', 'score': 9.87}, {'connected_gene': 'NEK9', 'score': 0.39}, {'connected_gene': 'GC14P075088', 'score': 0.23}]
chr14	GH14I075141	75141031	75141747	0.88	[{'connected_gene': 'TMED10', 'score': 12.31}, {'connected_gene': 'DPPA5P4', 'score': 11.59}, {'connected_gene': 'JDP2', 'score': 10.48}, {'connected_gene': 'ZC2HC1C', 'score': 9.54}, {'connected_gene': 'MLH3', 'score': 9.52}, {'connected_gene': 'FOS', 'score': 4.74}, {'connected_gene': 'NEK9', 'score': 0.39}, {'connected_gene': 'GC14P075088', 'score': 0.23}]
chr14	GH14I075143	75143601	75143800	0.51	[{'connected_gene': 'TMED10', 'score': 12.3}, {'connected_gene': 'JDP2', 'score': 9.79}, {'connected_gene': 'NEK9', 'score': 0.37}, {'connected_gene': 'GC14P075088', 'score': 0.22}]
chr14	GH14I075148	75144001	75144200	0.51	[{'connected_gene': 'TMED10', 'score': 12.3}, {'connected_gene': 'JDP2', 'score': 9.79}, {'connected_gene': 'NEK9', 'score': 0.37}, {'connected_gene': 'GC14P075088', 'score': 0.22}]
chr14	GH14I075149	75145838	75145984	0.4	[{'connected_gene': 'TMED10', 'score': 12.3}, {'connected_gene': 'JDP2', 'score': 9.79}, {'connected_gene': 'NEK9', 'score': 0.37}, {'connected_gene': 'GC14P075088', 'score': 0.22}]
chr14	GH14I075144	75144278	75144360	0.4	[{'connected_gene': 'TMED10', 'score': 12.3}, {'connected_gene': 'JDP2', 'score': 9.79}, {'connected_gene': 'NEK9', 'score': 0.37}, {'connected_gene': 'GC14P075088', 'score': 0.22}]
chr14	GH14I075221	75221361	75222999	1.25	[{'connected_gene': 'TMED10', 'score': 11.39}, {'connected_gene': 'JDP2', 'score': 9.52}, {'connected_gene': 'FOS', 'score': 3.16}, {'connected_gene': 'DLST', 'score': 1.22}, {'connected_gene': 'RNU4ATAC14P', 'score': 0.34}, {'connected_gene': 'LOC105370571', 'score': 0.28}]
chr14	GH14I075236	75236402	75240081	1.66	[{'connected_gene': 'TMED10', 'score': 11.53}, {'connected_gene': 'JDP2', 'score': 9.68}, {'connected_gene': 'ENSG00000258740', 'score': 5.74}, {'connected_gene': 'LOC105370571', 'score': 0.37}, {'connected_gene': 'RNU4ATAC14P', 'score': 0.28}]
chr14	GH14I075215	75215901	75216736	0.57	[{'connected_gene': 'TMED10', 'score': 11.48}, {'connected_gene': 'RNU4ATAC14P', 'score': 0.39}, {'connected_gene': 'LOC105370571', 'score': 0.26}]
chr14	GH14I075174	75174170	75177578	2.28	[{'connected_gene': 'ENSG00000273565', 'score': 550.77}, {'connected_gene': 'TMED10', 'score': 550.77}, {'connected_gene': 'ZC2HC1C', 'score': 17.21}, {'connected_gene': 'ACYP1', 'score': 6.25}, {'connected_gene': 'RPS6KL1', 'score': 4.17}, {'connected_gene': 'NEK9', 'score': 0.25}]
chr14	GH14I075282	75282418	75285010	1.43	[{'connected_gene': 'GC14P075289', 'score': 550.77}, {'connected_gene': 'GC14P075290', 'score': 550.77}, {'connected_gene': 'TMED10', 'score': 10.83}, {'connected_gene': 'LINC01220', 'score': 6.44}, {'connected_gene': 'JDP2', 'score': 6.12}, {'connected_gene': 'FOS', 'score': 1.84}, {'connected_gene': 'PROX2', 'score': 1.15}, {'connected_gene': 'DPPA5P4', 'score': 0.44}]
chr14	GH14I075178	75178159	75178168	0.23	[{'connected_gene': 'ENSG00000273565', 'score': 550.77}, {'connected_gene': 'TMED10', 'score': 550.77}, {'connected_gene': 'RNU4ATAC14P', 'score': 0.34}]