PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000381844	[[9724100, 9725474], [9727542, 9727638], [9728293, 9728457], [9731520, 9731644], [9770287, 9770745]]	[[9725414, 9725474], [9727542, 9727638], [9728293, 9728457], [9731520, 9731644], [9770287, 9770581]]
ENST00000238081	[[9724100, 9725474], [9727542, 9727638], [9728293, 9728457], [9731520, 9731644], [9770287, 9770663], [9771069, 9771143]]	[[9725414, 9725474], [9727542, 9727638], [9728293, 9728457], [9731520, 9731644], [9770287, 9770581]]
ENST00000474715	[[9725209, 9725474], [9727542, 9727638], [9728293, 9728457], [9731520, 9731644], [9760770, 9760830]]	None
ENST00000446619	[[9728426, 9728457], [9731520, 9731644], [9770287, 9770663], [9770941, 9771075]]	[[9728426, 9728457], [9731520, 9731644], [9770287, 9770581]]
ENST00000460093	[[9768831, 9769066], [9770287, 9770397]]	None
NM_006826	[[9724095, 9725474], [9727542, 9727638], [9728293, 9728457], [9731520, 9731644], [9770287, 9770663], [9771069, 9771184]]	[[9725414, 9725474], [9727542, 9727638], [9728293, 9728457], [9731520, 9731644], [9770287, 9770581]]

Promoter

Chrom	Start	End	Description
chr2	9770323	9770336	CAGE_peak_7_at_YWHAQ_5end
chr2	9770391	9770407	CAGE_peak_3_at_YWHAQ_5end
chr2	9770412	9770425	CAGE_peak_6_at_YWHAQ_5end
chr2	9770571	9770678	CAGE_peak_2_at_YWHAQ_5end
chr2	9770706	9770753	CAGE_peak_5_at_YWHAQ_5end
chr2	9770769	9770779	CAGE_peak_10_at_YWHAQ_5end
chr2	9770911	9770933	CAGE_peak_4_at_YWHAQ_5end
chr2	9771092	9771153	CAGE_peak_1_at_YWHAQ_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I010429	10429965	10435755	1.67	[{'connected_gene': 'TAF1B', 'score': 31.73}, {'connected_gene': 'LOC101929882', 'score': 28.23}, {'connected_gene': 'KLF11', 'score': 19.21}, {'connected_gene': 'NOL10', 'score': 18.64}, {'connected_gene': 'C2orf48', 'score': 11.35}, {'connected_gene': 'ENSG00000217258', 'score': 11.32}, {'connected_gene': 'YWHAQ', 'score': 11.31}, {'connected_gene': 'ENSG00000239300', 'score': 10.71}, {'connected_gene': 'CYS1', 'score': 10.4}, {'connected_gene': 'ENSG00000233502', 'score': 10.4}, {'connected_gene': 'ENSG00000257135', 'score': 10.39}, {'connected_gene': 'IAH1', 'score': 6.04}, {'connected_gene': 'GC02M010446', 'score': 0.39}, {'connected_gene': 'SNORA80B', 'score': 0.39}, {'connected_gene': 'PIR41580', 'score': 0.34}]
chr2	GH02I009233	9232312	9240090	1.66	[{'connected_gene': 'ASAP2', 'score': 15.29}, {'connected_gene': 'ADAM17', 'score': 5.02}, {'connected_gene': 'ITGB1BP1', 'score': 4.65}, {'connected_gene': 'YWHAQ', 'score': 1.95}, {'connected_gene': 'GC02M009211', 'score': 0.77}]
chr2	GH02I009284	9284747	9290122	1.47	[{'connected_gene': 'ASAP2', 'score': 24.66}, {'connected_gene': 'YWHAQ', 'score': 2.37}, {'connected_gene': 'ITGB1BP1', 'score': 1.45}, {'connected_gene': 'EIF1P7', 'score': 0.37}, {'connected_gene': 'GC02M009313', 'score': 0.31}]
chr2	GH02I009607	9607323	9610123	1.14	[{'connected_gene': 'IAH1', 'score': 4.79}, {'connected_gene': 'GC02P009616', 'score': 0.44}, {'connected_gene': 'YWHAQ', 'score': 0.34}, {'connected_gene': 'LOC101929643', 'score': 0.26}]
chr2	GH02I009593	9593602	9596999	0.85	[{'connected_gene': 'IAH1', 'score': 5.41}, {'connected_gene': 'ENSG00000239300', 'score': 4.77}, {'connected_gene': 'GC02P009616', 'score': 0.37}, {'connected_gene': 'LOC101929643', 'score': 0.31}, {'connected_gene': 'YWHAQ', 'score': 0.28}]
chr2	GH02I009649	9649874	9651164	0.38	[{'connected_gene': 'YWHAQ', 'score': 13.24}, {'connected_gene': 'ADAM17', 'score': 10.78}, {'connected_gene': 'LOC105373419', 'score': 0.44}, {'connected_gene': 'LOC105373418', 'score': 0.39}, {'connected_gene': 'LOC101926982', 'score': 0.37}]
chr2	GH02I009653	9653516	9659547	1.63	[{'connected_gene': 'YWHAQ', 'score': 14.75}, {'connected_gene': 'RNU4-73P', 'score': 11.34}, {'connected_gene': 'ENSG00000240960', 'score': 11.32}, {'connected_gene': 'ADAM17', 'score': 11.18}, {'connected_gene': 'LOC105373419', 'score': 0.77}, {'connected_gene': 'LOC101926982', 'score': 0.44}, {'connected_gene': 'LOC105373418', 'score': 0.37}]
chr2	GH02I009737	9737201	9737400	0.54	[{'connected_gene': 'YWHAQ', 'score': 6.27}, {'connected_gene': 'GC02M009741', 'score': 0.77}, {'connected_gene': 'RNU4-73P', 'score': 0.77}, {'connected_gene': 'ENSG00000244260', 'score': 0.21}]
chr2	GH02I009756	9756841	9759730	0.78	[{'connected_gene': 'YWHAQ', 'score': 4.9}, {'connected_gene': 'LOC105373420', 'score': 0.44}, {'connected_gene': 'LOC100996549', 'score': 0.34}]
chr2	GH02I009627	9627686	9633322	2.28	[{'connected_gene': 'YWHAQ', 'score': 555.98}, {'connected_gene': 'LOC101929882', 'score': 30.39}, {'connected_gene': 'ENSG00000239300', 'score': 16.6}, {'connected_gene': 'CPSF3', 'score': 16.17}, {'connected_gene': 'RNU4-73P', 'score': 11.22}, {'connected_gene': 'ENSG00000240960', 'score': 11.21}, {'connected_gene': 'KLF11', 'score': 10.74}, {'connected_gene': 'TAF1B', 'score': 9.98}, {'connected_gene': 'IAH1', 'score': 5.24}, {'connected_gene': 'ENSG00000207086', 'score': 0.37}]
chr2	GH02I009625	9625044	9626032	0.31	[{'connected_gene': 'YWHAQ', 'score': 0.44}, {'connected_gene': 'ENSG00000207086', 'score': 0.39}]
chr2	GH02I009628	9627432	9627621	0.87	[{'connected_gene': 'RNU4-73P', 'score': 11.22}, {'connected_gene': 'ENSG00000240960', 'score': 11.21}, {'connected_gene': 'YWHAQ', 'score': 0.77}, {'connected_gene': 'ENSG00000207086', 'score': 0.39}]
chr2	GH02I009626	9626832	9626981	0.4	[{'connected_gene': 'RNU4-73P', 'score': 11.22}, {'connected_gene': 'ENSG00000240960', 'score': 11.21}, {'connected_gene': 'YWHAQ', 'score': 0.77}, {'connected_gene': 'ENSG00000207086', 'score': 0.39}]
chr2	GH02I009763	9763232	9769121	1.54	[{'connected_gene': 'RNU4-73P', 'score': 12.23}, {'connected_gene': 'ENSG00000233502', 'score': 10.83}, {'connected_gene': 'LOC100996549', 'score': 6.77}, {'connected_gene': 'ENSG00000257135', 'score': 5.45}, {'connected_gene': 'LOC101929882', 'score': 5.39}, {'connected_gene': 'ADAM17', 'score': 5.02}, {'connected_gene': 'YWHAQ', 'score': 4.8}, {'connected_gene': 'LOC105373420', 'score': 0.39}]
chr2	GH02I009752	9752305	9754816	1.64	[{'connected_gene': 'LOC105373420', 'score': 550.77}, {'connected_gene': 'ADAM17', 'score': 17.51}, {'connected_gene': 'LOC100996549', 'score': 6.49}, {'connected_gene': 'YWHAQ', 'score': 6.42}, {'connected_gene': 'IAH1', 'score': 5.08}, {'connected_gene': 'KLF11', 'score': 2.0}, {'connected_gene': 'GRHL1', 'score': 1.98}]
chr2	GH02I009636	9636872	9640264	1.31	[{'connected_gene': 'LOC105373418', 'score': 550.77}, {'connected_gene': 'ASAP2', 'score': 8.74}, {'connected_gene': 'YWHAQ', 'score': 0.44}]
chr2	GH02I009565	9565001	9566418	1	[{'connected_gene': 'LOC101929643', 'score': 550.77}, {'connected_gene': 'YWHAQ', 'score': 11.67}, {'connected_gene': 'IAH1', 'score': 8.45}, {'connected_gene': 'GC02P009616', 'score': 0.25}]
chr2	GH02I009613	9613412	9613561	0.69	[{'connected_gene': 'GC02P009616', 'score': 550.77}, {'connected_gene': 'ENSG00000207086', 'score': 550.77}, {'connected_gene': 'YWHAQ', 'score': 0.37}, {'connected_gene': 'LOC101929643', 'score': 0.25}]
chr2	GH02I009617	9617812	9619557	0.69	[{'connected_gene': 'ENSG00000207086', 'score': 0.77}, {'connected_gene': 'YWHAQ', 'score': 0.39}]
chr2	GH02I009738	9738017	9740069	1.29	[{'connected_gene': 'GC02M009741', 'score': 550.77}, {'connected_gene': 'RNU4-73P', 'score': 550.77}, {'connected_gene': 'ADAM17', 'score': 13.79}, {'connected_gene': 'LOC100996549', 'score': 8.36}, {'connected_gene': 'YWHAQ', 'score': 6.8}, {'connected_gene': 'KLF11', 'score': 1.23}, {'connected_gene': 'ENSG00000244260', 'score': 0.2}]