PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000300107	[[65440556, 65443251], [65444767, 65444874], [65445884, 65445977], [65447119, 65447419], [65448029, 65448194], [65449181, 65449270], [65450083, 65450248], [65450912, 65451089], [65454941, 65454983], [65456366, 65456526], [65458968, 65459123], [65471271, 65471389], [65472381, 65472542], [65477412, 65477680]]	[[65443160, 65443251], [65444767, 65444874], [65445884, 65445977], [65447119, 65447419], [65448029, 65448194], [65449181, 65449270], [65450083, 65450248], [65450912, 65451089], [65454941, 65454983], [65456366, 65456526], [65458968, 65459123], [65471271, 65471389], [65472381, 65472542], [65477412, 65477491]]
ENST00000559152	[[65442851, 65443251], [65444767, 65444874], [65445884, 65445977], [65447119, 65447419], [65448029, 65448194], [65449115, 65449270], [65450083, 65450248], [65451024, 65451089], [65454941, 65454983], [65456366, 65456526], [65458968, 65459123], [65471271, 65471389], [65472381, 65472542], [65477412, 65477554]]	[[65450221, 65450248], [65451024, 65451089], [65454941, 65454983], [65456366, 65456526], [65458968, 65459123], [65471271, 65471389], [65472381, 65472542], [65477412, 65477491]]
ENST00000560166	[[65447016, 65447419], [65448029, 65448189]]	None
ENST00000558958	[[65449023, 65449270], [65450083, 65450248], [65450912, 65451089], [65454941, 65454983], [65456366, 65456526], [65458968, 65459123], [65471271, 65471389], [65472381, 65472542], [65477412, 65477680]]	None
ENST00000558103	[[65450528, 65451089], [65454941, 65454985]]	None
ENST00000559218	[[65458988, 65459123], [65471271, 65471389], [65472381, 65472542], [65476703, 65476822]]	[[65458988, 65459123], [65471271, 65471389], [65472381, 65472519]]
NM_006660	[[65440556, 65443251], [65444767, 65444874], [65445884, 65445977], [65447119, 65447419], [65448029, 65448194], [65449181, 65449270], [65450083, 65450248], [65450912, 65451089], [65454941, 65454983], [65456366, 65456526], [65458968, 65459123], [65471271, 65471389], [65472381, 65472542], [65477412, 65477758]]	[[65443160, 65443251], [65444767, 65444874], [65445884, 65445977], [65447119, 65447419], [65448029, 65448194], [65449181, 65449270], [65450083, 65450248], [65450912, 65451089], [65454941, 65454983], [65456366, 65456526], [65458968, 65459123], [65471271, 65471389], [65472381, 65472542], [65477412, 65477491]]
NR_133680	[[65440556, 65443251], [65444767, 65444874], [65445884, 65445977], [65447119, 65447419], [65448029, 65448194], [65449115, 65449270], [65450083, 65450248], [65451024, 65451089], [65454941, 65454983], [65456366, 65456526], [65458968, 65459123], [65471271, 65471389], [65472381, 65472542], [65477412, 65477758]]	None

Promoter

Chrom	Start	End	Description
chr15	65477464	65477479	CAGE_peak_8_at_CLPX_5end
chr15	65477637	65477701	CAGE_peak_1_at_CLPX_5end
chr15	65477785	65477794	CAGE_peak_2_at_CLPX_5end
chr15	65477916	65477928	CAGE_peak_6_at_CLPX_5end
chr15	65477972	65477981	CAGE_peak_12_at_CLPX_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I065248	65248041	65250161	0.64	[{'connected_gene': 'CILP', 'score': 12.13}, {'connected_gene': 'CLPX', 'score': 10.68}, {'connected_gene': 'PARP16', 'score': 6.69}, {'connected_gene': 'IGDCC3', 'score': 5.14}, {'connected_gene': 'RNU6-686P', 'score': 0.37}, {'connected_gene': 'SNORA24B', 'score': 0.28}]
chr15	GH15I065244	65244704	65246996	0.91	[{'connected_gene': 'CILP', 'score': 12.15}, {'connected_gene': 'CLPX', 'score': 10.68}, {'connected_gene': 'SPG21', 'score': 3.9}, {'connected_gene': 'RNU6-686P', 'score': 0.37}, {'connected_gene': 'SNORA24B', 'score': 0.28}, {'connected_gene': 'PARP16', 'score': 0.23}]
chr15	GH15I065257	65257010	65260489	0.59	[{'connected_gene': 'PARP16', 'score': 24.62}, {'connected_gene': 'IGDCC3', 'score': 14.93}, {'connected_gene': 'RNU6-686P', 'score': 12.76}, {'connected_gene': 'CILP', 'score': 12.09}, {'connected_gene': 'SNORA24B', 'score': 11.8}, {'connected_gene': 'RNU5A-1', 'score': 11.77}, {'connected_gene': 'CLPX', 'score': 11.23}, {'connected_gene': 'RNU5B-1', 'score': 10.97}, {'connected_gene': 'MIR1272', 'score': 9.23}]
chr15	GH15I065274	65274983	65276292	1.07	[{'connected_gene': 'PARP16', 'score': 16.47}, {'connected_gene': 'RNU5B-1', 'score': 12.94}, {'connected_gene': 'RNU6-686P', 'score': 12.0}, {'connected_gene': 'CILP', 'score': 11.58}, {'connected_gene': 'CLPX', 'score': 11.33}, {'connected_gene': 'IGDCC3', 'score': 10.07}, {'connected_gene': 'SNORA24B', 'score': 0.44}]
chr15	GH15I065254	65254060	65255332	0.46	[{'connected_gene': 'PARP16', 'score': 18.49}, {'connected_gene': 'RNU6-686P', 'score': 12.21}, {'connected_gene': 'CILP', 'score': 12.1}, {'connected_gene': 'SNORA24B', 'score': 11.78}, {'connected_gene': 'RNU5A-1', 'score': 11.75}, {'connected_gene': 'CLPX', 'score': 11.24}, {'connected_gene': 'RNU5B-1', 'score': 10.88}, {'connected_gene': 'IGDCC3', 'score': 9.7}, {'connected_gene': 'MIR1272', 'score': 9.22}]
chr15	GH15I065110	65110283	65111096	1.03	[{'connected_gene': 'MTFMT', 'score': 11.11}, {'connected_gene': 'CLPX', 'score': 10.69}, {'connected_gene': 'RBPMS2', 'score': 9.42}, {'connected_gene': 'ANKDD1A', 'score': 2.74}, {'connected_gene': 'PDCD7', 'score': 1.51}, {'connected_gene': 'UBAP1L', 'score': 0.77}, {'connected_gene': 'ENSG00000259258', 'score': 0.44}, {'connected_gene': 'GC15M065089', 'score': 0.37}]
chr15	GH15I065177	65177603	65178574	0.43	[{'connected_gene': 'CLPX', 'score': 0.44}, {'connected_gene': 'GC15P069469', 'score': 0.39}, {'connected_gene': 'GC15P069467', 'score': 0.39}, {'connected_gene': 'PIR39480', 'score': 0.39}, {'connected_gene': 'GC15P069470', 'score': 0.39}, {'connected_gene': 'GC15P069468', 'score': 0.39}]
chr15	GH15I065309	65309595	65310523	0.43	[{'connected_gene': 'GC15M065309', 'score': 550.77}, {'connected_gene': 'IGDCC3', 'score': 17.13}, {'connected_gene': 'SNORA24B', 'score': 11.61}, {'connected_gene': 'CLPX', 'score': 11.29}, {'connected_gene': 'CILP', 'score': 10.8}, {'connected_gene': 'PARP16', 'score': 7.7}, {'connected_gene': 'GC15M065305', 'score': 0.77}]
chr15	GH15I065305	65305883	65305992	0.31	[{'connected_gene': 'GC15P068442', 'score': 550.77}, {'connected_gene': 'RNU5B-1', 'score': 550.77}, {'connected_gene': 'GC15M065305', 'score': 550.77}, {'connected_gene': 'IGDCC3', 'score': 11.64}, {'connected_gene': 'CLPX', 'score': 11.29}, {'connected_gene': 'CILP', 'score': 10.81}, {'connected_gene': 'GC15M065309', 'score': 0.77}]
chr15	GH15I065303	65303361	65305581	2.16	[{'connected_gene': 'GC15P068442', 'score': 550.77}, {'connected_gene': 'RNU5B-1', 'score': 550.77}, {'connected_gene': 'GC15M065305', 'score': 550.77}, {'connected_gene': 'PARP16', 'score': 95.98}, {'connected_gene': 'ZNF609', 'score': 79.82}, {'connected_gene': 'TRIP4', 'score': 60.71}, {'connected_gene': 'INTS14', 'score': 59.69}, {'connected_gene': 'PDCD7', 'score': 49.5}, {'connected_gene': 'SLC24A1', 'score': 33.36}, {'connected_gene': 'ENSG00000264937', 'score': 30.88}, {'connected_gene': 'CILP', 'score': 28.67}, {'connected_gene': 'ENSG00000259635', 'score': 22.27}, {'connected_gene': 'IGDCC3', 'score': 16.73}, {'connected_gene': 'CSNK1G1', 'score': 14.99}, {'connected_gene': 'DENND4A', 'score': 11.41}, {'connected_gene': 'CLPX', 'score': 11.29}, {'connected_gene': 'SPG21', 'score': 10.21}, {'connected_gene': 'ENSG00000265967', 'score': 9.79}, {'connected_gene': 'ENSG00000259346', 'score': 0.77}]
chr15	GH15I065183	65183239	65186285	2.08	[{'connected_gene': 'GC15P069466', 'score': 550.77}, {'connected_gene': 'GC15P069460', 'score': 550.77}, {'connected_gene': 'GC15P069465', 'score': 550.77}, {'connected_gene': 'PIR37257', 'score': 550.77}, {'connected_gene': 'GC15P069464', 'score': 550.77}, {'connected_gene': 'GC15P069459', 'score': 550.77}, {'connected_gene': 'GC15P069462', 'score': 550.77}, {'connected_gene': 'GC15P069458', 'score': 550.77}, {'connected_gene': 'GC15P069461', 'score': 550.77}, {'connected_gene': 'CLPX', 'score': 550.77}, {'connected_gene': 'PARP16', 'score': 36.14}, {'connected_gene': 'INTS14', 'score': 24.08}, {'connected_gene': 'SPG21', 'score': 14.18}, {'connected_gene': 'TRIP4', 'score': 14.07}, {'connected_gene': 'ZNF609', 'score': 12.91}, {'connected_gene': 'SNORA24B', 'score': 12.34}, {'connected_gene': 'RNU5A-1', 'score': 12.33}, {'connected_gene': 'SLC24A1', 'score': 12.32}, {'connected_gene': 'CILP', 'score': 12.14}, {'connected_gene': 'RNU5B-1', 'score': 11.75}, {'connected_gene': 'PDCD7', 'score': 11.58}, {'connected_gene': 'UBAP1L', 'score': 8.02}, {'connected_gene': 'PCLAF', 'score': 5.05}, {'connected_gene': 'GC15P069470', 'score': 0.37}, {'connected_gene': 'GC15P069467', 'score': 0.37}, {'connected_gene': 'PIR39480', 'score': 0.37}, {'connected_gene': 'GC15P069468', 'score': 0.37}, {'connected_gene': 'GC15P069469', 'score': 0.37}]