Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000361042 [[27131839, 27131956], [27187097, 27187195], [27216397, 27216540], [27239164, 27239299], [27241653, 27241807], [27246008, 27246126], [27254171, 27254338], [27255190, 27255457], [27256743, 27257111], [27259824, 27263062]] [[27216407, 27216540], [27239164, 27239299], [27241653, 27241807], [27246008, 27246126], [27254171, 27254338], [27255190, 27255457], [27256743, 27257111], [27259824, 27259982]]
ENST00000335327 [[27131886, 27131956], [27187097, 27187195], [27216397, 27216540], [27239164, 27239299], [27241653, 27241807], [27246008, 27246126], [27250685, 27250861], [27255190, 27255457], [27256743, 27257111], [27259824, 27263085]] [[27216407, 27216540], [27239164, 27239299], [27241653, 27241807], [27246008, 27246126], [27250685, 27250861], [27255190, 27255457], [27256743, 27257111], [27259824, 27259982]]
ENST00000496788 [[27216082, 27216240], [27216397, 27216540], [27239164, 27239299], [27241653, 27241807], [27246008, 27246126], [27250685, 27250761]] None
NM_001291965 [[27131839, 27131956], [27187097, 27187195], [27216397, 27216540], [27239164, 27239299], [27241653, 27241807], [27246008, 27246126], [27254171, 27254338], [27255190, 27255457], [27256743, 27257111], [27259824, 27263082]] [[27216407, 27216540], [27239164, 27239299], [27241653, 27241807], [27246008, 27246126], [27254171, 27254338], [27255190, 27255457], [27256743, 27257111], [27259824, 27259982]]
NM_006646 [[27131839, 27131956], [27187097, 27187195], [27216397, 27216540], [27239164, 27239299], [27241653, 27241807], [27246008, 27246126], [27250685, 27250861], [27255190, 27255457], [27256743, 27257111], [27259824, 27263082]] [[27216407, 27216540], [27239164, 27239299], [27241653, 27241807], [27246008, 27246126], [27250685, 27250861], [27255190, 27255457], [27256743, 27257111], [27259824, 27259982]]
Promoter
Chrom Start End Description
chr13 27131798 27131886 CAGE_peak_1_at_WASF3_5end
chr13 27131887 27131899 CAGE_peak_2_at_WASF3_5end
chr13 27216066 27216088 CAGE_peak_4_at_WASF3_5end
chr13 27239085 27239095 CAGE_peak_13_at_WASF3_5end
chr13 27239109 27239118 CAGE_peak_18_at_WASF3_5end
chr13 27239129 27239135 CAGE_peak_20_at_WASF3_5end
chr13 27239143 27239158 CAGE_peak_11_at_WASF3_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr13 GH13I027034 27034601 27038147 1.29 [{'connected_gene': 'RPL21', 'score': 11.83}, {'connected_gene': 'RASL11A', 'score': 10.85}, {'connected_gene': 'RNU6-70P', 'score': 10.76}, {'connected_gene': 'POLR1D', 'score': 9.81}, {'connected_gene': 'WASF3', 'score': 3.6}, {'connected_gene': 'GPR12', 'score': 1.62}, {'connected_gene': 'GC13P027043', 'score': 0.44}, {'connected_gene': 'RPS20P32', 'score': 0.37}]
chr13 GH13I027250 27250234 27254322 2.25 [{'connected_gene': 'RPL21', 'score': 550.77}, {'connected_gene': 'GC13M027245', 'score': 550.77}, {'connected_gene': 'LINC02340', 'score': 550.77}, {'connected_gene': 'USP12', 'score': 14.05}, {'connected_gene': 'WASF3', 'score': 13.82}, {'connected_gene': 'PAN3', 'score': 12.72}, {'connected_gene': 'SNORA27', 'score': 12.12}, {'connected_gene': 'MTIF3', 'score': 4.61}, {'connected_gene': 'PIR55933', 'score': 0.77}]
chr13 GH13I026185 26185454 26188027 1.46 [{'connected_gene': 'RNF6', 'score': 11.73}, {'connected_gene': 'WASF3', 'score': 1.37}, {'connected_gene': 'ATP8A2P3', 'score': 0.29}, {'connected_gene': 'ENSG00000277368', 'score': 0.28}]
chr13 GH13I026503 26503000 26503201 0.63 [{'connected_gene': 'RNF6', 'score': 10.06}, {'connected_gene': 'WASF3', 'score': 0.23}, {'connected_gene': 'GC13P026404', 'score': 0.15}]
chr13 GH13I026497 26497466 26499622 0.74 [{'connected_gene': 'RNF6', 'score': 10.06}, {'connected_gene': 'WASF3', 'score': 4.95}, {'connected_gene': 'GC13P026404', 'score': 0.16}]
chr13 GH13I026441 26441961 26443707 0.58 [{'connected_gene': 'RNF6', 'score': 10.05}, {'connected_gene': 'CDK8', 'score': 8.05}, {'connected_gene': 'GC13P026404', 'score': 0.28}, {'connected_gene': 'WASF3', 'score': 0.14}]
chr13 GH13I026678 26678772 26680812 0.58 [{'connected_gene': 'RASL11A', 'score': 4.77}, {'connected_gene': 'PIR53379', 'score': 0.44}, {'connected_gene': 'WASF3-AS1', 'score': 0.28}, {'connected_gene': 'WASF3', 'score': 0.13}]
chr13 GH13I026456 26456744 26461439 0.97 [{'connected_gene': 'MTIF3', 'score': 5.21}, {'connected_gene': 'GC13P026404', 'score': 0.23}, {'connected_gene': 'WASF3', 'score': 0.15}]
chr13 GH13I026583 26583610 26585623 0.77 [{'connected_gene': 'WASF3', 'score': 20.1}, {'connected_gene': 'RPS3AP44', 'score': 0.44}, {'connected_gene': 'WASF3-AS1', 'score': 0.22}]
chr13 GH13I026560 26560927 26563161 0.91 [{'connected_gene': 'WASF3', 'score': 12.68}, {'connected_gene': 'RPS3AP44', 'score': 0.39}]
chr13 GH13I026557 26557200 26559001 1.87 [{'connected_gene': 'WASF3', 'score': 561.12}, {'connected_gene': 'RPS3AP44', 'score': 0.37}]
chr13 GH13I026646 26646484 26647090 0.2 [{'connected_gene': 'WASF3', 'score': 10.51}, {'connected_gene': 'RASL11A', 'score': 4.4}, {'connected_gene': 'WASF3-AS1', 'score': 0.44}, {'connected_gene': 'PIR53379', 'score': 0.26}]
chr13 GH13I026615 26615470 26617160 0.2 [{'connected_gene': 'WASF3', 'score': 22.08}, {'connected_gene': 'WASF3-AS1', 'score': 11.53}, {'connected_gene': 'RPS3AP44', 'score': 0.28}]
chr13 GH13I026604 26604284 26605138 0.38 [{'connected_gene': 'WASF3', 'score': 19.93}, {'connected_gene': 'WASF3-AS1', 'score': 11.56}, {'connected_gene': 'RPS3AP44', 'score': 0.31}]
chr13 GH13I026591 26591064 26591317 0.84 [{'connected_gene': 'WASF3', 'score': 12.19}, {'connected_gene': 'WASF3-AS1', 'score': 10.91}, {'connected_gene': 'RPS3AP44', 'score': 0.39}]
chr13 GH13I026603 26603138 26603197 0.5 [{'connected_gene': 'WASF3', 'score': 561.53}, {'connected_gene': 'WASF3-AS1', 'score': 11.56}, {'connected_gene': 'RPS3AP44', 'score': 0.31}]
chr13 GH13I026592 26592031 26592047 0.24 [{'connected_gene': 'WASF3', 'score': 14.04}, {'connected_gene': 'WASF3-AS1', 'score': 10.93}, {'connected_gene': 'GPR12', 'score': 1.79}, {'connected_gene': 'RPS3AP44', 'score': 0.37}]
chr13 GH13I026496 26496601 26496873 0.8 [{'connected_gene': 'WASF3', 'score': 4.58}, {'connected_gene': 'GC13P026404', 'score': 0.16}]
chr13 GH13I026495 26495884 26496013 0.2 [{'connected_gene': 'WASF3', 'score': 0.21}, {'connected_gene': 'GC13P026404', 'score': 0.16}]
chr13 GH13I026480 26480604 26480753 0.2 [{'connected_gene': 'WASF3', 'score': 0.18}, {'connected_gene': 'GC13P026404', 'score': 0.18}]
chr13 GH13I026518 26518024 26519306 0.38 [{'connected_gene': 'WASF3', 'score': 6.62}, {'connected_gene': 'GC13P026404', 'score': 0.14}]
chr13 GH13I026482 26482401 26482906 0.88 [{'connected_gene': 'WASF3', 'score': 0.18}, {'connected_gene': 'GC13P026404', 'score': 0.18}]
chr13 GH13I026508 26508531 26509499 0.38 [{'connected_gene': 'WASF3', 'score': 0.25}, {'connected_gene': 'GC13P026404', 'score': 0.15}]
chr13 GH13I026486 26486644 26486789 0.51 [{'connected_gene': 'WASF3', 'score': 0.19}, {'connected_gene': 'GC13P026404', 'score': 0.18}]
chr13 GH13I026468 26468430 26469333 0.4 [{'connected_gene': 'CDK8', 'score': 5.12}, {'connected_gene': 'GC13P026404', 'score': 0.21}, {'connected_gene': 'WASF3', 'score': 0.17}]
chr13 GH13I026469 26469638 26470376 0.31 [{'connected_gene': 'CDK8', 'score': 5.12}, {'connected_gene': 'GC13P026404', 'score': 0.2}, {'connected_gene': 'WASF3', 'score': 0.17}]
chr13 GH13I026473 26473620 26474568 0.2 [{'connected_gene': 'CDK8', 'score': 4.86}, {'connected_gene': 'GC13P026404', 'score': 0.2}, {'connected_gene': 'WASF3', 'score': 0.18}]
chr13 GH13I026430 26430545 26432516 0.31 [{'connected_gene': 'CDK8', 'score': 8.2}, {'connected_gene': 'GC13P026404', 'score': 0.31}, {'connected_gene': 'WASF3', 'score': 0.13}]
chr13 GH13I026422 26422801 26426914 0.86 [{'connected_gene': 'CDK8', 'score': 8.16}, {'connected_gene': 'GC13P026404', 'score': 0.37}, {'connected_gene': 'WASF3', 'score': 0.12}]
chr13 GH13I026432 26432811 26434764 0.31 [{'connected_gene': 'CDK8', 'score': 8.36}, {'connected_gene': 'GC13P026404', 'score': 0.31}, {'connected_gene': 'WASF3', 'score': 0.13}]
chr13 GH13I026621 26621456 26621556 0.33 [{'connected_gene': 'WASF3-AS1', 'score': 0.37}, {'connected_gene': 'RPS3AP44', 'score': 0.26}, {'connected_gene': 'WASF3', 'score': 0.21}]
chr13 GH13I026622 26622144 26622253 0.62 [{'connected_gene': 'WASF3-AS1', 'score': 0.37}, {'connected_gene': 'RPS3AP44', 'score': 0.25}, {'connected_gene': 'WASF3', 'score': 0.21}]
chr13 GH13I026624 26624646 26624652 0.45 [{'connected_gene': 'WASF3-AS1', 'score': 0.37}, {'connected_gene': 'RPS3AP44', 'score': 0.25}, {'connected_gene': 'WASF3', 'score': 0.2}]
chr13 GH13I026605 26605964 26606113 0.38 [{'connected_gene': 'WASF3-AS1', 'score': 11.79}, {'connected_gene': 'WASF3', 'score': 11.76}, {'connected_gene': 'RPS3AP44', 'score': 0.31}]
chr13 GH13I026601 26601601 26602001 0.63 [{'connected_gene': 'WASF3-AS1', 'score': 11.56}, {'connected_gene': 'WASF3', 'score': 11.55}, {'connected_gene': 'RPS3AP44', 'score': 0.34}]
chr13 GH13I026658 26658515 26658859 0.38 [{'connected_gene': 'WASF3-AS1', 'score': 0.37}, {'connected_gene': 'PIR53379', 'score': 0.31}, {'connected_gene': 'WASF3', 'score': 0.15}]
chr13 GH13I026474 26474805 26477969 0.96 [{'connected_gene': 'GC13P026404', 'score': 0.19}, {'connected_gene': 'WASF3', 'score': 0.18}]
chr13 GH13I026412 26412364 26412513 0.46 [{'connected_gene': 'GC13P026404', 'score': 0.44}, {'connected_gene': 'WASF3', 'score': 0.11}]

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