PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000294489	[[13909959, 13910595], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13944452]]	[[13910300, 13910595], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13942406]]
ENST00000376057	[[13910256, 13910595], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940900], [13942399, 13944452]]	[[13910300, 13910595], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940900], [13942399, 13942406]]
ENST00000506205	[[13910326, 13910595], [13922321, 13922479], [13933667, 13933716]]	[[13910326, 13910595], [13922321, 13922335]]
ENST00000510906	[[13910327, 13910595], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13941009]]	[[13910327, 13910595], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940910]]
ENST00000509009	[[13910587, 13910683], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13942459]]	[[13910631, 13910683], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13942406]]
ENST00000376061	[[13910761, 13910836], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13943277]]	[[13933726, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13942406]]
ENST00000513143	[[13910764, 13910836], [13922321, 13922479], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13943059]]	[[13933726, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13942406]]
ENST00000487038	[[13911955, 13912134], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13942412]]	[[13933726, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13942406]]
ENST00000475043	[[13911966, 13912063], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940900], [13942399, 13942742]]	[[13933726, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940900], [13942399, 13942406]]
ENST00000488631	[[13911974, 13912134], [13933667, 13933801], [13940181, 13940220], [13940794, 13940900], [13942399, 13942754]]	[[13933726, 13933801], [13940181, 13940220], [13940794, 13940812]]
NM_198389	[[13910251, 13910595], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940900], [13942399, 13944452]]	[[13910300, 13910595], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940900], [13942399, 13942406]]
NM_006474	[[13910251, 13910595], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13944452]]	[[13910300, 13910595], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13942406]]
NM_001006625	[[13911966, 13912134], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940900], [13942399, 13944452]]	[[13933726, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940900], [13942399, 13942406]]
NM_001006624	[[13911966, 13912134], [13933667, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13944452]]	[[13933726, 13933801], [13936881, 13937011], [13940181, 13940220], [13940794, 13940906], [13942399, 13942406]]

Promoter

Chrom	Start	End	Description
chr1	13910194	13910339	CAGE_peak_1_at_PDPN_5end
chr1	13910456	13910461	CAGE_peak_4_at_PDPN_5end
chr1	13910479	13910490	CAGE_peak_2_at_PDPN_5end
chr1	13910757	13910770	CAGE_peak_3_at_PDPN_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I013590	13590563	13590818	0.48	[{'connected_gene': 'PDPN', 'score': 2.98}, {'connected_gene': 'PRDM2', 'score': 2.51}, {'connected_gene': 'RNA5SP41', 'score': 0.29}]
chr1	GH01I013910	13910652	13914111	0.31	[{'connected_gene': 'PDPN', 'score': 9.91}, {'connected_gene': 'KAZN', 'score': 0.37}, {'connected_gene': 'GC01P014000', 'score': 0.17}]
chr1	GH01I013916	13916335	13917407	0.31	[{'connected_gene': 'PDPN', 'score': 9.92}, {'connected_gene': 'KAZN', 'score': 0.34}, {'connected_gene': 'GC01P014000', 'score': 0.18}]
chr1	GH01I013900	13900073	13900155	0.2	[{'connected_gene': 'PDPN', 'score': 9.85}, {'connected_gene': 'KAZN', 'score': 0.44}, {'connected_gene': 'GC01P014000', 'score': 0.15}]
chr1	GH01I013917	13917474	13919869	0.31	[{'connected_gene': 'PDPN', 'score': 9.92}, {'connected_gene': 'KAZN', 'score': 0.31}, {'connected_gene': 'GC01P014000', 'score': 0.18}]
chr1	GH01I013901	13901067	13902248	0.38	[{'connected_gene': 'PDPN', 'score': 9.85}, {'connected_gene': 'KAZN', 'score': 0.44}, {'connected_gene': 'GC01P014000', 'score': 0.15}]
chr1	GH01I013604	13604814	13605800	1.21	[{'connected_gene': 'PDPN', 'score': 14.09}, {'connected_gene': 'LRRC38', 'score': 10.32}, {'connected_gene': 'PRDM2', 'score': 2.82}, {'connected_gene': 'RNA5SP41', 'score': 0.37}]
chr1	GH01I013618	13618719	13620905	0.46	[{'connected_gene': 'PDPN', 'score': 24.49}, {'connected_gene': 'LRRC38', 'score': 13.48}, {'connected_gene': 'PRAMEF36P', 'score': 4.64}, {'connected_gene': 'RNA5SP41', 'score': 0.77}]
chr1	GH01I013605	13605961	13606719	0.2	[{'connected_gene': 'PDPN', 'score': 11.95}, {'connected_gene': 'LRRC38', 'score': 10.32}, {'connected_gene': 'RNA5SP41', 'score': 0.37}]
chr1	GH01I013543	13543078	13544411	0.79	[{'connected_gene': 'PDPN', 'score': 4.8}, {'connected_gene': 'BRWD1P1', 'score': 0.39}, {'connected_gene': 'LRRC38', 'score': 0.31}]
chr1	GH01I013592	13592897	13594707	1.21	[{'connected_gene': 'PDPN', 'score': 555.6}, {'connected_gene': 'RNA5SP41', 'score': 0.31}]
chr1	GH01I013596	13596584	13597747	0.2	[{'connected_gene': 'PDPN', 'score': 0.39}, {'connected_gene': 'RNA5SP41', 'score': 0.31}]
chr1	GH01I013617	13617551	13618256	0.4	[{'connected_gene': 'PDPN', 'score': 20.27}, {'connected_gene': 'RNA5SP41', 'score': 0.44}]
chr1	GH01I013599	13599639	13601520	0.66	[{'connected_gene': 'PDPN', 'score': 0.37}, {'connected_gene': 'RNA5SP41', 'score': 0.34}]
chr1	GH01I013583	13583034	13587420	2.23	[{'connected_gene': 'PDPN', 'score': 556.84}, {'connected_gene': 'RNA5SP41', 'score': 0.28}]
chr1	GH01I013623	13623338	13623658	0.22	[{'connected_gene': 'RNA5SP41', 'score': 550.77}, {'connected_gene': 'PDPN', 'score': 3.8}, {'connected_gene': 'PRDM2', 'score': 2.94}, {'connected_gene': 'GC01P013657', 'score': 0.29}]