PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000282120	[[85545146, 85549864], [85552037, 85552121], [85553630, 85553927], [85554101, 85554349], [85554643, 85554808], [85555039, 85555374]]	[[85549858, 85549864], [85552037, 85552121], [85553630, 85553927], [85554101, 85554349], [85554643, 85554808], [85555039, 85555085]]
ENST00000377386	[[85545146, 85549864], [85552037, 85552121], [85553630, 85554808], [85555039, 85555548]]	[[85549858, 85549864], [85552037, 85552121], [85553630, 85554808], [85555039, 85555085]]
ENST00000398263	[[85545149, 85549864], [85552037, 85552121], [85553630, 85553927], [85554101, 85554808], [85555039, 85555374]]	[[85549858, 85549864], [85552037, 85552121], [85553630, 85553927], [85554101, 85554808], [85555039, 85555085]]
ENST00000409232	[[85549016, 85549881], [85552037, 85552121], [85553630, 85554808], [85555039, 85555147]]	[[85549827, 85549881], [85552037, 85552121], [85553630, 85554808], [85555039, 85555085]]
ENST00000409015	[[85549016, 85549922], [85552037, 85552121], [85553630, 85554808], [85555039, 85555147]]	[[85549865, 85549922], [85552037, 85552121], [85553630, 85554808], [85555039, 85555085]]
ENST00000444342	[[85551507, 85552121], [85553630, 85554808], [85555039, 85555108]]	[[85552001, 85552121], [85553630, 85554808], [85555039, 85555085]]
NM_001206840	[[85545140, 85549922], [85552037, 85552121], [85553630, 85554808], [85555039, 85555419]]	[[85549787, 85549922], [85552037, 85552121], [85553630, 85554808], [85555039, 85555085]]
NM_001206841	[[85545140, 85549881], [85552037, 85552121], [85553630, 85554808], [85555039, 85555419]]	[[85549827, 85549881], [85552037, 85552121], [85553630, 85554808], [85555039, 85555085]]
NM_006464	[[85545140, 85549864], [85552037, 85552121], [85553630, 85554808], [85555039, 85555419]]	[[85549858, 85549864], [85552037, 85552121], [85553630, 85554808], [85555039, 85555085]]
NM_001206844	[[85545140, 85549864], [85552037, 85552121], [85553630, 85553927], [85554101, 85554808], [85555039, 85555419]]	[[85549858, 85549864], [85552037, 85552121], [85553630, 85553927], [85554101, 85554808], [85555039, 85555085]]

Promoter

Chrom	Start	End	Description
chr2	85546361	85546379	CAGE_peak_10_at_TGOLN2_5end
chr2	85555061	85555081	CAGE_peak_2_at_TGOLN2_5end
chr2	85555086	85555119	CAGE_peak_1_at_TGOLN2_5end
chr2	85555355	85555383	CAGE_peak_4_at_TGOLN2_5end
chr2	85555385	85555424	CAGE_peak_3_at_TGOLN2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I085306	85306475	85308438	1.35	[{'connected_gene': 'ELMOD3', 'score': 22.7}, {'connected_gene': 'SNORD94', 'score': 15.87}, {'connected_gene': 'TGOLN2', 'score': 14.24}, {'connected_gene': 'C2orf68', 'score': 13.55}, {'connected_gene': 'LOC100996506', 'score': 11.22}, {'connected_gene': 'USP39', 'score': 10.94}, {'connected_gene': 'RETSAT', 'score': 10.82}, {'connected_gene': 'CAPG', 'score': 10.42}, {'connected_gene': 'TCF7L1', 'score': 4.67}, {'connected_gene': 'GC02M085296', 'score': 0.39}]
chr2	GH02I085342	85342041	85343636	0.2	[{'connected_gene': 'PEBP1P2', 'score': 550.77}, {'connected_gene': 'CAPG', 'score': 20.08}, {'connected_gene': 'RETSAT', 'score': 17.35}, {'connected_gene': 'TGOLN2', 'score': 7.5}, {'connected_gene': 'LOC100996506', 'score': 5.69}, {'connected_gene': 'ELMOD3', 'score': 0.39}]
chr2	GH02I085341	85341269	85341980	0.38	[{'connected_gene': 'PEBP1P2', 'score': 550.77}, {'connected_gene': 'CAPG', 'score': 32.33}, {'connected_gene': 'SH2D6', 'score': 10.81}, {'connected_gene': 'TGOLN2', 'score': 9.83}, {'connected_gene': 'ENSG00000239143', 'score': 0.44}, {'connected_gene': 'GC02M085333', 'score': 0.44}, {'connected_gene': 'RETSAT', 'score': 0.39}]
chr2	GH02I085404	85404401	85412400	1.97	[{'connected_gene': 'CAPG', 'score': 576.98}, {'connected_gene': 'RETSAT', 'score': 12.18}, {'connected_gene': 'TGOLN2', 'score': 1.49}, {'connected_gene': 'KCMF1', 'score': 1.2}, {'connected_gene': 'LOC105374841', 'score': 0.44}, {'connected_gene': 'ENSG00000273196', 'score': 0.34}, {'connected_gene': 'GC02P085363', 'score': 0.25}]
chr2	GH02I085455	85455248	85459897	1.05	[{'connected_gene': 'CAPG', 'score': 20.18}, {'connected_gene': 'SH2D6', 'score': 11.53}, {'connected_gene': 'MAT2A', 'score': 11.08}, {'connected_gene': 'ELMOD3', 'score': 10.76}, {'connected_gene': 'RETSAT', 'score': 10.76}, {'connected_gene': 'USP39', 'score': 6.37}, {'connected_gene': 'TGOLN2', 'score': 5.14}, {'connected_gene': 'VAMP5', 'score': 4.45}, {'connected_gene': 'ENSG00000199936', 'score': 0.77}, {'connected_gene': 'GC02M085461', 'score': 0.77}, {'connected_gene': 'RN7SL251P', 'score': 0.37}]
chr2	GH02I085412	85412587	85415392	2.49	[{'connected_gene': 'CAPG', 'score': 576.34}, {'connected_gene': 'LOC105374841', 'score': 550.77}, {'connected_gene': 'RETSAT', 'score': 11.74}, {'connected_gene': 'TGOLN2', 'score': 1.48}, {'connected_gene': 'VAMP8', 'score': 1.31}, {'connected_gene': 'ENSG00000273196', 'score': 0.31}, {'connected_gene': 'GC02P085363', 'score': 0.23}]
chr2	GH02I085273	85273912	85275210	1.18	[{'connected_gene': 'PTCD3', 'score': 12.04}, {'connected_gene': 'TCF7L1', 'score': 11.69}, {'connected_gene': 'TGOLN2', 'score': 4.47}, {'connected_gene': 'ENSG00000230299', 'score': 0.39}, {'connected_gene': 'GC02M085296', 'score': 0.37}]
chr2	GH02I085316	85316457	85317752	0.2	[{'connected_gene': 'RETSAT', 'score': 17.82}, {'connected_gene': 'ELMOD3', 'score': 11.09}, {'connected_gene': 'TGOLN2', 'score': 6.48}, {'connected_gene': 'PIR54061', 'score': 0.77}, {'connected_gene': 'LOC100996506', 'score': 0.77}]
chr2	GH02I085318	85318269	85319437	0.58	[{'connected_gene': 'RETSAT', 'score': 20.93}, {'connected_gene': 'TGOLN2', 'score': 19.99}, {'connected_gene': 'LOC100996506', 'score': 13.98}, {'connected_gene': 'ELMOD3', 'score': 11.3}, {'connected_gene': 'CAPG', 'score': 5.44}, {'connected_gene': 'PIR54061', 'score': 0.77}]
chr2	GH02I085548	85548476	85552506	1.28	[{'connected_gene': 'USP39', 'score': 19.56}, {'connected_gene': 'GGCX', 'score': 17.33}, {'connected_gene': 'VAMP8', 'score': 15.85}, {'connected_gene': 'SH2D6', 'score': 12.57}, {'connected_gene': 'CAPG', 'score': 12.57}, {'connected_gene': 'TGOLN2', 'score': 11.06}, {'connected_gene': 'TMEM150A', 'score': 11.0}, {'connected_gene': 'RNU7-64P', 'score': 10.85}, {'connected_gene': 'RN7SL251P', 'score': 10.85}, {'connected_gene': 'ELMOD3', 'score': 10.41}, {'connected_gene': 'RETSAT', 'score': 10.41}, {'connected_gene': 'TMSB10', 'score': 4.67}, {'connected_gene': 'GC02P085546', 'score': 0.77}]
chr2	GH02I085444	85444391	85447900	1.55	[{'connected_gene': 'TGOLN2', 'score': 10.0}, {'connected_gene': 'CAPG', 'score': 6.89}, {'connected_gene': 'SH2D6', 'score': 4.47}, {'connected_gene': 'RN7SL251P', 'score': 0.77}, {'connected_gene': 'ENSG00000199936', 'score': 0.39}, {'connected_gene': 'GC02M085461', 'score': 0.39}, {'connected_gene': 'GC02P085363', 'score': 0.18}]
chr2	GH02I085448	85448166	85451268	0.46	[{'connected_gene': 'TGOLN2', 'score': 9.13}, {'connected_gene': 'CAPG', 'score': 6.97}, {'connected_gene': 'RN7SL251P', 'score': 0.44}, {'connected_gene': 'ENSG00000199936', 'score': 0.39}, {'connected_gene': 'GC02M085461', 'score': 0.39}, {'connected_gene': 'GC02P085363', 'score': 0.17}]
chr2	GH02I085308	85308543	85311156	1.1	[{'connected_gene': 'TGOLN2', 'score': 20.87}, {'connected_gene': 'RETSAT', 'score': 15.15}, {'connected_gene': 'ELMOD3', 'score': 10.83}, {'connected_gene': 'CAPG', 'score': 5.48}, {'connected_gene': 'LOC100996506', 'score': 0.77}, {'connected_gene': 'GC02M085296', 'score': 0.37}, {'connected_gene': 'TCF7L1', 'score': 0.1}]
chr2	GH02I085323	85323529	85329089	2.32	[{'connected_gene': 'TGOLN2', 'score': 570.33}, {'connected_gene': 'RETSAT', 'score': 31.6}, {'connected_gene': 'ELMOD3', 'score': 21.94}, {'connected_gene': 'LOC100996506', 'score': 18.73}, {'connected_gene': 'SNORD94', 'score': 18.17}, {'connected_gene': 'CAPG', 'score': 16.28}, {'connected_gene': 'USP39', 'score': 13.99}, {'connected_gene': 'C2orf68', 'score': 13.31}, {'connected_gene': 'SH2D6', 'score': 10.95}, {'connected_gene': 'VAMP8', 'score': 10.09}, {'connected_gene': 'TCF7L1', 'score': 4.65}, {'connected_gene': 'PIR54061', 'score': 0.77}]
chr2	GH02I085329	85329218	85329265	1.08	[{'connected_gene': 'TGOLN2', 'score': 550.77}, {'connected_gene': 'SH2D6', 'score': 10.96}, {'connected_gene': 'CAPG', 'score': 10.96}, {'connected_gene': 'ENSG00000239143', 'score': 0.77}, {'connected_gene': 'GC02M085333', 'score': 0.77}]
chr2	GH02I085243	85243778	85243927	0.79	[{'connected_gene': 'LOC105374839', 'score': 550.77}, {'connected_gene': 'RNU6-674P', 'score': 11.08}, {'connected_gene': 'TCF7L1', 'score': 10.94}, {'connected_gene': 'TGOLN2', 'score': 4.98}, {'connected_gene': 'ENSG00000230299', 'score': 0.37}]
chr2	GH02I085213	85213478	85217696	1.13	[{'connected_gene': 'LOC102724579', 'score': 550.77}, {'connected_gene': 'USP39', 'score': 4.62}, {'connected_gene': 'TGOLN2', 'score': 4.62}, {'connected_gene': 'PIR39171', 'score': 0.39}, {'connected_gene': 'TCF7L1', 'score': 0.18}]
chr2	GH02I085311	85311740	85315006	0.8	[{'connected_gene': 'LOC100996506', 'score': 550.77}, {'connected_gene': 'TGOLN2', 'score': 20.75}, {'connected_gene': 'ELMOD3', 'score': 11.07}, {'connected_gene': 'RETSAT', 'score': 11.07}, {'connected_gene': 'GC02M085296', 'score': 0.34}]
chr2	GH02I085432	85432571	85440250	1.99	[{'connected_gene': 'GC02P085438', 'score': 550.77}, {'connected_gene': 'ENSG00000207207', 'score': 550.77}, {'connected_gene': 'SH2D6', 'score': 15.09}, {'connected_gene': 'MAT2A', 'score': 12.01}, {'connected_gene': 'CAPG', 'score': 11.3}, {'connected_gene': 'TGOLN2', 'score': 11.08}, {'connected_gene': 'KCMF1', 'score': 2.53}, {'connected_gene': 'RNU7-64P', 'score': 0.44}, {'connected_gene': 'GC02P085363', 'score': 0.19}]
chr2	GH02I085294	85294350	85295292	0.46	[{'connected_gene': 'GC02M085296', 'score': 550.77}, {'connected_gene': 'TGOLN2', 'score': 8.87}, {'connected_gene': 'CAPG', 'score': 6.12}, {'connected_gene': 'RETSAT', 'score': 5.73}, {'connected_gene': 'LOC100996506', 'score': 0.37}, {'connected_gene': 'TCF7L1', 'score': 0.1}]