PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000555133	[[77924212, 77924325], [77925958, 77926149], [77928502, 77928585], [77928984, 77929102], [77930940, 77931029], [77931881, 77932010], [77934425, 77934527], [77934799, 77934851], [77935419, 77935590]]	[[77929035, 77929102], [77930940, 77931029], [77931881, 77932010], [77934425, 77934527], [77934799, 77934851], [77935419, 77935590]]
ENST00000216479	[[77924372, 77924612], [77925958, 77926149], [77928502, 77928585], [77928984, 77929102], [77930940, 77931029], [77931881, 77932010], [77934425, 77934527], [77934799, 77934851], [77935419, 77935817]]	[[77924532, 77924612], [77925958, 77926149], [77928502, 77928585], [77928984, 77929102], [77930940, 77931029], [77931881, 77932010], [77934425, 77934527], [77934799, 77934851], [77935419, 77935592]]
ENST00000535854	[[77924374, 77924612], [77925958, 77926149], [77928502, 77928585], [77928984, 77929102], [77930940, 77931029], [77931881, 77932010], [77934425, 77934527], [77934799, 77934851], [77934932, 77935103]]	[[77924532, 77924612], [77925958, 77926149], [77928502, 77928585], [77928984, 77929102], [77930940, 77931029], [77931881, 77932010], [77934425, 77934527], [77934799, 77934851], [77934932, 77934955]]
ENST00000554156	[[77924375, 77924612], [77925958, 77926149], [77928502, 77928662]]	None
ENST00000555517	[[77924379, 77924612], [77925958, 77926557]]	[[77924532, 77924612], [77925958, 77926181]]
ENST00000556963	[[77924559, 77924612], [77925958, 77926149], [77928502, 77928585], [77928984, 77929444]]	None
ENST00000556866	[[77926011, 77926149], [77928502, 77928585], [77928984, 77929102], [77930940, 77931033]]	None
ENST00000553374	[[77926042, 77926149], [77928502, 77928585], [77928984, 77929102], [77930940, 77931029], [77931881, 77932010], [77934425, 77934662]]	[[77926042, 77926149], [77928502, 77928585], [77928984, 77929102], [77930940, 77931029], [77931881, 77932010], [77934425, 77934548]]
ENST00000555457	[[77926087, 77926149], [77928502, 77928585], [77934425, 77934527], [77935419, 77935813]]	None
ENST00000555729	[[77926123, 77926149], [77928502, 77928585], [77928984, 77929102], [77935419, 77935813]]	[[77926123, 77926149], [77928502, 77928585], [77928984, 77929102], [77935419, 77935592]]
ENST00000555473	[[77930925, 77931029], [77931881, 77932010], [77934425, 77934527], [77934799, 77934851], [77935419, 77935593]]	None
ENST00000556369	[[77931916, 77932010], [77934425, 77934527], [77934799, 77934851], [77934932, 77935032], [77935314, 77935815]]	[[77931916, 77932010], [77934425, 77934527], [77934799, 77934851], [77934932, 77934955]]
ENST00000557476	[[77935138, 77935328], [77935419, 77935813]]	[[77935138, 77935328], [77935419, 77935592]]
NM_001321441	[[77924219, 77924325], [77925958, 77926149], [77928502, 77928585], [77928984, 77929102], [77930940, 77931029], [77931881, 77932010], [77934425, 77934527], [77934799, 77934851], [77935419, 77935815]]	[[77929035, 77929102], [77930940, 77931029], [77931881, 77932010], [77934425, 77934527], [77934799, 77934851], [77935419, 77935592]]
NM_012111	[[77924372, 77924612], [77925958, 77926149], [77928502, 77928585], [77928984, 77929102], [77930940, 77931029], [77931881, 77932010], [77934425, 77934527], [77934799, 77934851], [77935419, 77935815]]	[[77924532, 77924612], [77925958, 77926149], [77928502, 77928585], [77928984, 77929102], [77930940, 77931029], [77931881, 77932010], [77934425, 77934527], [77934799, 77934851], [77935419, 77935592]]

Promoter

Chrom	Start	End	Description
chr14	77924204	77924229	CAGE_peak_3_at_AHSA1_5end
chr14	77924394	77924451	CAGE_peak_1_at_AHSA1_5end
chr14	77924458	77924475	CAGE_peak_2_at_AHSA1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I077301	77301832	77308334	1.39	[{'connected_gene': 'VIPAS39', 'score': 24.31}, {'connected_gene': 'IRF2BPL', 'score': 16.36}, {'connected_gene': 'GSTZ1', 'score': 15.6}, {'connected_gene': 'ALKBH1', 'score': 13.09}, {'connected_gene': 'NGB', 'score': 11.62}, {'connected_gene': 'MIR1260A', 'score': 11.22}, {'connected_gene': 'ZDHHC22', 'score': 10.98}, {'connected_gene': 'ENSG00000201384', 'score': 10.97}, {'connected_gene': 'SAMD15', 'score': 10.85}, {'connected_gene': 'TMED8', 'score': 10.85}, {'connected_gene': 'AHSA1', 'score': 10.53}, {'connected_gene': 'SNW1', 'score': 10.45}, {'connected_gene': 'RPL21P10', 'score': 10.32}, {'connected_gene': 'CIPC', 'score': 9.66}, {'connected_gene': 'POMT2', 'score': 6.49}, {'connected_gene': 'SPTLC2', 'score': 4.43}, {'connected_gene': 'PIR44060', 'score': 0.77}]
chr14	GH14I077551	77551679	77552743	0.49	[{'connected_gene': 'VIPAS39', 'score': 12.05}, {'connected_gene': 'AHSA1', 'score': 12.05}, {'connected_gene': 'POMT2', 'score': 10.61}, {'connected_gene': 'GSTZ1', 'score': 10.61}, {'connected_gene': 'ZDHHC22', 'score': 10.41}, {'connected_gene': 'TMED8', 'score': 10.06}, {'connected_gene': 'SAMD15', 'score': 10.06}, {'connected_gene': 'SPTLC2', 'score': 9.43}, {'connected_gene': 'RN7SL587P', 'score': 0.77}]
chr14	GH14I077552	77551458	77551607	0.74	[{'connected_gene': 'VIPAS39', 'score': 12.05}, {'connected_gene': 'AHSA1', 'score': 12.05}, {'connected_gene': 'POMT2', 'score': 10.61}, {'connected_gene': 'GSTZ1', 'score': 10.61}, {'connected_gene': 'ZDHHC22', 'score': 10.41}, {'connected_gene': 'TMED8', 'score': 10.06}, {'connected_gene': 'SAMD15', 'score': 10.06}, {'connected_gene': 'SPTLC2', 'score': 9.41}, {'connected_gene': 'RN7SL587P', 'score': 0.77}]
chr14	GH14I077456	77456412	77459494	2.06	[{'connected_gene': 'VIPAS39', 'score': 556.03}, {'connected_gene': 'AHSA1', 'score': 550.77}, {'connected_gene': 'TMED8', 'score': 19.87}, {'connected_gene': 'ADCK1', 'score': 7.0}, {'connected_gene': 'ENSG00000212371', 'score': 0.44}]
chr14	GH14I077296	77296133	77297241	0.69	[{'connected_gene': 'GSTZ1', 'score': 23.4}, {'connected_gene': 'POMT2', 'score': 18.15}, {'connected_gene': 'NGB', 'score': 12.0}, {'connected_gene': 'MIR1260A', 'score': 11.54}, {'connected_gene': 'ZDHHC22', 'score': 11.28}, {'connected_gene': 'ENSG00000201384', 'score': 10.97}, {'connected_gene': 'VIPAS39', 'score': 10.52}, {'connected_gene': 'AHSA1', 'score': 10.52}, {'connected_gene': 'CIPC', 'score': 9.66}, {'connected_gene': 'TMEM63C', 'score': 4.87}, {'connected_gene': 'PIR44060', 'score': 0.44}, {'connected_gene': 'PIR56307', 'score': 0.34}]
chr14	GH14I077299	77299452	77301807	0.92	[{'connected_gene': 'GSTZ1', 'score': 24.52}, {'connected_gene': 'POMT2', 'score': 18.14}, {'connected_gene': 'NGB', 'score': 11.64}, {'connected_gene': 'MIR1260A', 'score': 11.24}, {'connected_gene': 'ZDHHC22', 'score': 10.99}, {'connected_gene': 'ENSG00000201384', 'score': 10.97}, {'connected_gene': 'VIPAS39', 'score': 10.53}, {'connected_gene': 'AHSA1', 'score': 10.53}, {'connected_gene': 'CIPC', 'score': 9.66}, {'connected_gene': 'PIR44060', 'score': 0.77}, {'connected_gene': 'PIR56307', 'score': 0.34}]
chr14	GH14I077541	77541586	77545009	1.04	[{'connected_gene': 'TMED8', 'score': 15.96}, {'connected_gene': 'VIPAS39', 'score': 11.64}, {'connected_gene': 'AHSA1', 'score': 11.64}, {'connected_gene': 'SAMD15', 'score': 10.23}, {'connected_gene': 'SPTLC2', 'score': 8.01}, {'connected_gene': 'ISM2', 'score': 6.02}, {'connected_gene': 'RN7SL587P', 'score': 0.77}, {'connected_gene': 'GC14M077506', 'score': 0.28}]
chr14	GH14I077371	77371287	77374562	1.02	[{'connected_gene': 'TMED8', 'score': 22.54}, {'connected_gene': 'POMT2', 'score': 21.25}, {'connected_gene': 'GSTZ1', 'score': 21.22}, {'connected_gene': 'ENSG00000259081', 'score': 11.04}, {'connected_gene': 'AHSA1', 'score': 10.66}, {'connected_gene': 'VIPAS39', 'score': 10.65}, {'connected_gene': 'SAMD15', 'score': 0.77}, {'connected_gene': 'LOC100422225', 'score': 0.39}]
chr14	GH14I077312	77312625	77318317	1.5	[{'connected_gene': 'TMED8', 'score': 23.4}, {'connected_gene': 'GSTZ1', 'score': 17.58}, {'connected_gene': 'NGB', 'score': 11.05}, {'connected_gene': 'ZDHHC22', 'score': 10.98}, {'connected_gene': 'ENSG00000201384', 'score': 10.7}, {'connected_gene': 'SAMD15', 'score': 10.69}, {'connected_gene': 'VIPAS39', 'score': 10.42}, {'connected_gene': 'AHSA1', 'score': 10.42}, {'connected_gene': 'TMEM63C', 'score': 10.0}, {'connected_gene': 'POMT2', 'score': 6.19}, {'connected_gene': 'PIR44060', 'score': 0.39}]
chr14	GH14I077406	77406601	77408000	0.96	[{'connected_gene': 'SAMD15', 'score': 33.29}, {'connected_gene': 'TMED8', 'score': 24.13}, {'connected_gene': 'VIPAS39', 'score': 11.24}, {'connected_gene': 'AHSA1', 'score': 11.24}, {'connected_gene': 'POMT2', 'score': 11.22}, {'connected_gene': 'GSTZ1', 'score': 11.22}, {'connected_gene': 'GC14M077403', 'score': 0.77}, {'connected_gene': 'NOXRED1', 'score': 0.37}]
chr14	GH14I077548	77548703	77550079	0.4	[{'connected_gene': 'RN7SL587P', 'score': 550.77}, {'connected_gene': 'TMED8', 'score': 16.16}, {'connected_gene': 'VIPAS39', 'score': 12.05}, {'connected_gene': 'AHSA1', 'score': 12.05}, {'connected_gene': 'POMT2', 'score': 10.62}, {'connected_gene': 'GSTZ1', 'score': 10.62}, {'connected_gene': 'SAMD15', 'score': 10.42}, {'connected_gene': 'ZDHHC22', 'score': 10.41}, {'connected_gene': 'SPTLC2', 'score': 7.57}]
chr14	GH14I077359	77359896	77359948	0.22	[{'connected_gene': 'LOC100422225', 'score': 550.77}, {'connected_gene': 'TMED8', 'score': 22.69}, {'connected_gene': 'POMT2', 'score': 11.39}, {'connected_gene': 'GSTZ1', 'score': 11.39}, {'connected_gene': 'VIPAS39', 'score': 10.63}, {'connected_gene': 'AHSA1', 'score': 10.63}, {'connected_gene': 'SAMD15', 'score': 0.37}]
chr14	GH14I077507	77507621	77509363	0.72	[{'connected_gene': 'GC14M077506', 'score': 550.77}, {'connected_gene': 'VIPAS39', 'score': 15.83}, {'connected_gene': 'AHSA1', 'score': 10.88}, {'connected_gene': 'TMED8', 'score': 10.5}, {'connected_gene': 'SAMD15', 'score': 10.5}, {'connected_gene': 'ISM2', 'score': 8.83}, {'connected_gene': 'RN7SL587P', 'score': 0.28}, {'connected_gene': 'SPTLC2', 'score': 0.14}]