PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000560261	[[80125926, 80125995], [80131822, 80132051], [80133551, 80133678], [80137499, 80137669]]	[[80137551, 80137669]]
ENST00000258874	[[80137317, 80137784], [80181434, 80181696], [80189213, 80189391]]	[[80137551, 80137784], [80181434, 80181696], [80189213, 80189330]]
ENST00000560919	[[80181433, 80181696], [80189132, 80189339]]	[[80189195, 80189330]]
ENST00000559722	[[80181433, 80181696], [80189502, 80189721]]	None
NR_037654	[[80135888, 80137784], [80181434, 80181696], [80189132, 80189339]]	None
NM_006441	[[80135888, 80137784], [80181434, 80181696], [80189213, 80189391]]	[[80137551, 80137784], [80181434, 80181696], [80189213, 80189330]]
NM_001199758	[[80135888, 80137784], [80181434, 80181696], [80189502, 80189627]]	[[80137551, 80137784], [80181434, 80181642]]

Promoter

Chrom	Start	End	Description
chr15	80189307	80189318	CAGE_peak_7_at_MTHFS_5end
chr15	80189328	80189366	CAGE_peak_1_at_MTHFS_5end
chr15	80189380	80189391	CAGE_peak_4_at_MTHFS_5end
chr15	80215984	80216125	CAGE_peak_1_at_ST20_5end,CAGE_peak_2_at_MTHFS_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I080430	80430083	80432771	0.31	[{'connected_gene': 'ARNT2', 'score': 11.83}, {'connected_gene': 'CEMIP', 'score': 10.36}, {'connected_gene': 'ENSG00000258010', 'score': 5.03}, {'connected_gene': 'ST20', 'score': 4.55}, {'connected_gene': 'MTHFS', 'score': 4.39}]
chr15	GH15I079947	79947779	79948950	1.23	[{'connected_gene': 'BCL2A1', 'score': 22.91}, {'connected_gene': 'ST20', 'score': 11.52}, {'connected_gene': 'MTHFS', 'score': 5.82}, {'connected_gene': 'ZFAND6', 'score': 3.32}, {'connected_gene': 'GC15P079945', 'score': 0.77}]
chr15	GH15I079902	79902055	79902202	0.88	[{'connected_gene': 'BCL2A1', 'score': 21.73}, {'connected_gene': 'RNU6-667P', 'score': 9.83}, {'connected_gene': 'ZFAND6', 'score': 3.77}, {'connected_gene': 'ST20-MTHFS', 'score': 2.15}, {'connected_gene': 'ST20', 'score': 1.55}, {'connected_gene': 'MTHFS', 'score': 0.77}, {'connected_gene': 'GC15M079918', 'score': 0.37}]
chr15	GH15I079961	79961601	79962874	1.32	[{'connected_gene': 'BCL2A1', 'score': 25.0}, {'connected_gene': 'RNU6-667P', 'score': 9.8}, {'connected_gene': 'ZFAND6', 'score': 6.72}, {'connected_gene': 'ST20-MTHFS', 'score': 4.72}, {'connected_gene': 'MTHFS', 'score': 3.34}, {'connected_gene': 'ST20', 'score': 2.78}, {'connected_gene': 'GC15P079945', 'score': 0.37}]
chr15	GH15I079867	79867843	79869410	0.31	[{'connected_gene': 'BCL2A1', 'score': 10.75}, {'connected_gene': 'RNU6-667P', 'score': 10.64}, {'connected_gene': 'ST20', 'score': 10.43}, {'connected_gene': 'GC15M079834', 'score': 0.77}, {'connected_gene': 'ENSG00000279394', 'score': 0.44}, {'connected_gene': 'MTHFS', 'score': 0.31}, {'connected_gene': 'ST20-MTHFS', 'score': 0.22}]
chr15	GH15I079906	79906201	79906400	0.4	[{'connected_gene': 'BCL2A1', 'score': 11.53}, {'connected_gene': 'RNU6-667P', 'score': 9.63}, {'connected_gene': 'MTHFS', 'score': 0.44}, {'connected_gene': 'GC15M079918', 'score': 0.39}, {'connected_gene': 'ST20-MTHFS', 'score': 0.37}, {'connected_gene': 'ST20', 'score': 0.37}]
chr15	GH15I079900	79900147	79900408	0.77	[{'connected_gene': 'BCL2A1', 'score': 45.91}, {'connected_gene': 'RNU6-667P', 'score': 9.83}, {'connected_gene': 'ST20-MTHFS', 'score': 6.16}, {'connected_gene': 'ZFAND6', 'score': 6.14}, {'connected_gene': 'MTHFS', 'score': 5.81}, {'connected_gene': 'ST20', 'score': 4.37}, {'connected_gene': 'GC15M079918', 'score': 0.34}]
chr15	GH15I079964	79964588	79972057	2.44	[{'connected_gene': 'BCL2A1', 'score': 581.6}, {'connected_gene': 'MTHFS', 'score': 14.06}, {'connected_gene': 'ST20-MTHFS', 'score': 13.86}, {'connected_gene': 'ST20', 'score': 9.84}, {'connected_gene': 'RNU6-667P', 'score': 9.8}, {'connected_gene': 'LOC101929560', 'score': 6.53}, {'connected_gene': 'ZFAND6', 'score': 5.85}, {'connected_gene': 'GC15P079945', 'score': 0.34}]
chr15	GH15I079973	79973401	79974206	1.24	[{'connected_gene': 'BCL2A1', 'score': 25.86}, {'connected_gene': 'ST20-MTHFS', 'score': 10.78}, {'connected_gene': 'MTHFS', 'score': 7.53}, {'connected_gene': 'ST20', 'score': 7.27}, {'connected_gene': 'ZFAND6', 'score': 4.48}, {'connected_gene': 'LOC100420205', 'score': 0.39}]
chr15	GH15I080031	80031470	80035287	1.13	[{'connected_gene': 'ZFAND6', 'score': 11.92}, {'connected_gene': 'BCL2A1', 'score': 10.88}, {'connected_gene': 'ST20', 'score': 7.35}, {'connected_gene': 'MTHFS', 'score': 6.43}, {'connected_gene': 'RASGRF1', 'score': 5.0}, {'connected_gene': 'ENSG00000279705', 'score': 0.37}, {'connected_gene': 'ENSG00000275460', 'score': 0.34}]
chr15	GH15I080008	80008763	80012675	0.98	[{'connected_gene': 'ZFAND6', 'score': 13.72}, {'connected_gene': 'BCL2A1', 'score': 13.42}, {'connected_gene': 'RNU6-667P', 'score': 10.23}, {'connected_gene': 'MTHFS', 'score': 7.0}, {'connected_gene': 'ST20', 'score': 6.95}, {'connected_gene': 'ENSG00000279705', 'score': 0.77}, {'connected_gene': 'ENSG00000279719', 'score': 0.34}]
chr15	GH15I079903	79903801	79904400	0.66	[{'connected_gene': 'ST20', 'score': 32.8}, {'connected_gene': 'BCL2A1', 'score': 11.53}, {'connected_gene': 'RNU6-667P', 'score': 9.63}, {'connected_gene': 'MTHFS', 'score': 0.44}, {'connected_gene': 'ST20-MTHFS', 'score': 0.37}, {'connected_gene': 'GC15M079918', 'score': 0.37}]
chr15	GH15I079915	79915298	79915357	0.5	[{'connected_gene': 'ST20', 'score': 550.44}, {'connected_gene': 'BCL2A1', 'score': 11.46}, {'connected_gene': 'RNU6-667P', 'score': 9.35}, {'connected_gene': 'ST20-MTHFS', 'score': 0.44}, {'connected_gene': 'GC15M079918', 'score': 0.44}, {'connected_gene': 'MTHFS', 'score': 0.37}]
chr15	GH15I079921	79921873	79924814	2.05	[{'connected_gene': 'ST20', 'score': 581.91}, {'connected_gene': 'ST20-MTHFS', 'score': 550.77}, {'connected_gene': 'ENSG00000278600', 'score': 550.77}, {'connected_gene': 'ST20-AS1', 'score': 550.77}, {'connected_gene': 'MTHFS', 'score': 37.18}, {'connected_gene': 'BCL2A1', 'score': 11.68}]
chr15	GH15I078913	78913579	78918096	1.29	[{'connected_gene': 'MORF4L1', 'score': 7.54}, {'connected_gene': 'ADAMTS7P3', 'score': 4.94}, {'connected_gene': 'MTHFS', 'score': 4.27}, {'connected_gene': 'ENSG00000279235', 'score': 0.44}, {'connected_gene': 'CTSH', 'score': 0.29}]
chr15	GH15I079894	79894481	79899998	2.28	[{'connected_gene': 'MTHFS', 'score': 587.4}, {'connected_gene': 'ST20', 'score': 31.93}, {'connected_gene': 'BCL2A1', 'score': 12.02}, {'connected_gene': 'ZFAND6', 'score': 10.73}, {'connected_gene': 'RNU6-667P', 'score': 10.08}, {'connected_gene': 'KIAA1024', 'score': 4.42}, {'connected_gene': 'ENSG00000279394', 'score': 0.37}, {'connected_gene': 'ST20-MTHFS', 'score': 0.31}]
chr15	GH15I079872	79872301	79873394	0.76	[{'connected_gene': 'MTHFS', 'score': 21.29}, {'connected_gene': 'ST20', 'score': 18.13}, {'connected_gene': 'BCL2A1', 'score': 15.78}, {'connected_gene': 'ZFAND6', 'score': 3.7}, {'connected_gene': 'ST20-MTHFS', 'score': 3.49}, {'connected_gene': 'GC15M079834', 'score': 0.44}, {'connected_gene': 'ENSG00000279394', 'score': 0.44}]
chr15	GH15I079883	79883085	79888497	0.87	[{'connected_gene': 'MTHFS', 'score': 37.44}, {'connected_gene': 'ST20', 'score': 18.1}, {'connected_gene': 'BCL2A1', 'score': 11.75}, {'connected_gene': 'RNU6-667P', 'score': 10.37}, {'connected_gene': 'ZFAND6', 'score': 10.23}, {'connected_gene': 'KIAA1024', 'score': 4.42}, {'connected_gene': 'ENSG00000279394', 'score': 0.44}, {'connected_gene': 'ST20-MTHFS', 'score': 0.28}]
chr15	GH15I079909	79909637	79910600	0.88	[{'connected_gene': 'MTHFS', 'score': 21.98}, {'connected_gene': 'ST20', 'score': 12.83}, {'connected_gene': 'BCL2A1', 'score': 11.67}, {'connected_gene': 'RNU6-667P', 'score': 9.98}, {'connected_gene': 'ST20-MTHFS', 'score': 0.39}, {'connected_gene': 'GC15M079918', 'score': 0.39}]
chr15	GH15I079811	79811499	79812788	0.43	[{'connected_gene': 'MTHFS', 'score': 25.33}, {'connected_gene': 'ENSG00000259548', 'score': 5.92}, {'connected_gene': 'ST20', 'score': 4.58}, {'connected_gene': 'RNU6-667P', 'score': 0.44}, {'connected_gene': 'GC15M079771', 'score': 0.29}]
chr15	GH15I079853	79853228	79854254	0.88	[{'connected_gene': 'MTHFS', 'score': 30.1}, {'connected_gene': 'RNU6-667P', 'score': 11.35}, {'connected_gene': 'BCL2A1', 'score': 10.79}, {'connected_gene': 'KIAA1024', 'score': 9.72}, {'connected_gene': 'GC15P079856', 'score': 0.77}, {'connected_gene': 'ENSG00000261229', 'score': 0.44}, {'connected_gene': 'GC15M079834', 'score': 0.39}, {'connected_gene': 'ST20-MTHFS', 'score': 0.19}]
chr15	GH15I078968	78968625	78969276	0.56	[{'connected_gene': 'MTHFS', 'score': 4.4}, {'connected_gene': 'LOC100129540', 'score': 0.44}, {'connected_gene': 'GC15M078960', 'score': 0.44}, {'connected_gene': 'RASGRF1', 'score': 0.13}]
chr15	GH15I080439	80439270	80448032	0.81	[{'connected_gene': 'ENSG00000258010', 'score': 550.77}, {'connected_gene': 'ARNT2', 'score': 11.07}, {'connected_gene': 'CEMIP', 'score': 10.7}, {'connected_gene': 'ST20', 'score': 5.72}, {'connected_gene': 'MTHFS', 'score': 4.42}, {'connected_gene': 'GC15M080442', 'score': 0.77}]
chr15	GH15I079864	79864019	79864168	0.43	[{'connected_gene': 'GC15M079834', 'score': 550.77}, {'connected_gene': 'BCL2A1', 'score': 10.74}, {'connected_gene': 'RNU6-667P', 'score': 10.69}, {'connected_gene': 'ENSG00000279394', 'score': 0.39}, {'connected_gene': 'MTHFS', 'score': 0.29}, {'connected_gene': 'ST20-MTHFS', 'score': 0.22}]
chr15	GH15I079856	79856922	79856976	0.22	[{'connected_gene': 'GC15P079856', 'score': 550.77}, {'connected_gene': 'RNU6-667P', 'score': 11.42}, {'connected_gene': 'ST20', 'score': 4.69}, {'connected_gene': 'ST20-MTHFS', 'score': 2.55}, {'connected_gene': 'MTHFS', 'score': 1.98}, {'connected_gene': 'GC15M079834', 'score': 0.44}, {'connected_gene': 'ENSG00000261229', 'score': 0.39}]
chr15	GH15I079881	79881339	79881488	0.69	[{'connected_gene': 'ENSG00000279394', 'score': 0.77}, {'connected_gene': 'MTHFS', 'score': 0.37}, {'connected_gene': 'ST20-MTHFS', 'score': 0.26}]
chr15	GH15I079873	79873785	79874031	0.31	[{'connected_gene': 'ENSG00000279394', 'score': 0.77}, {'connected_gene': 'GC15M079834', 'score': 0.44}, {'connected_gene': 'MTHFS', 'score': 0.34}, {'connected_gene': 'ST20-MTHFS', 'score': 0.25}]
chr15	GH15I079874	79874379	79874588	0.56	[{'connected_gene': 'ENSG00000279394', 'score': 0.77}, {'connected_gene': 'GC15M079834', 'score': 0.39}, {'connected_gene': 'MTHFS', 'score': 0.34}, {'connected_gene': 'ST20-MTHFS', 'score': 0.25}]