PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000470323	[[79115480, 79115590], [79119927, 79119964], [79120698, 79120894], [79121046, 79121196], [79124996, 79125168], [79126238, 79126339], [79128388, 79128441]]	None
ENST00000370747	[[79115515, 79115590], [79115870, 79116337], [79119927, 79119964], [79120698, 79120894], [79121046, 79121196], [79124996, 79125168], [79126238, 79126339], [79128388, 79128563], [79129449, 79129763]]	[[79115880, 79116337], [79119927, 79119964], [79120698, 79120894], [79121046, 79121196], [79124996, 79125168], [79126238, 79126339], [79128388, 79128563], [79129449, 79129496]]
ENST00000438486	[[79115516, 79115590], [79116225, 79116337], [79119927, 79119964], [79120698, 79120894], [79121046, 79121196], [79124996, 79125113]]	[[79116252, 79116337], [79119927, 79119964], [79120698, 79120894], [79121046, 79121196], [79124996, 79125113]]
ENST00000545124	[[79115516, 79115590], [79119927, 79119964], [79120698, 79120894], [79121046, 79121196], [79124996, 79125168], [79126238, 79127139]]	[[79125005, 79125168], [79126238, 79126465]]
ENST00000495254	[[79115517, 79115590], [79119927, 79119964], [79120698, 79120894], [79121046, 79121196], [79124996, 79125168], [79128388, 79128563], [79129449, 79129763]]	None
ENST00000467790	[[79115526, 79115590], [79115870, 79116337], [79119927, 79119964], [79120698, 79121196]]	None
ENST00000472152	[[79115542, 79115590], [79119927, 79119964], [79120698, 79120894], [79121046, 79121196], [79124996, 79125168], [79129449, 79129763]]	None
ENST00000485662	[[79125003, 79125168], [79126238, 79126376], [79128388, 79128563], [79129449, 79129582]]	None
ENST00000476911	[[79128300, 79128563], [79129449, 79129763]]	None
ENST00000446486	[[79128419, 79128602], [79129449, 79129763]]	[[79128419, 79128602], [79129449, 79129496]]
NR_135640	[[79115473, 79115590], [79119927, 79119964], [79120698, 79120894], [79121046, 79121196], [79124996, 79125168], [79129449, 79129763]]	None
NR_135641	[[79115473, 79115590], [79115870, 79116337], [79119927, 79119964], [79120698, 79120894], [79121046, 79121196], [79124996, 79125168], [79128388, 79128563], [79129449, 79129763]]	None
NM_006417	[[79115476, 79115590], [79115870, 79116337], [79119927, 79119964], [79120698, 79120894], [79121046, 79121196], [79124996, 79125168], [79126238, 79126339], [79128388, 79128563], [79129449, 79129763]]	[[79115880, 79116337], [79119927, 79119964], [79120698, 79120894], [79121046, 79121196], [79124996, 79125168], [79126238, 79126339], [79128388, 79128563], [79129449, 79129496]]

Promoter

Chrom	Start	End	Description
chr1	79115503	79115530	CAGE_peak_1_at_IFI44_5end
chr1	79115553	79115564	CAGE_peak_2_at_IFI44_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I079040	79040401	79041200	0.87	[{'connected_gene': 'ADGRL4', 'score': 11.54}, {'connected_gene': 'IFI44', 'score': 5.31}, {'connected_gene': 'PSAT1P3', 'score': 0.37}]
chr1	GH01I078099	78099994	78105279	1.34	[{'connected_gene': 'GIPC2', 'score': 8.71}, {'connected_gene': 'IFI44', 'score': 4.52}, {'connected_gene': 'RNA5SP22', 'score': 0.44}, {'connected_gene': 'GC01M078095', 'score': 0.44}, {'connected_gene': 'GC01M078144', 'score': 0.23}]
chr1	GH01I078070	78070284	78072412	1.06	[{'connected_gene': 'GIPC2', 'score': 11.22}, {'connected_gene': 'ACTG1P21', 'score': 9.4}, {'connected_gene': 'RNA5SP21', 'score': 9.4}, {'connected_gene': 'MIGA1', 'score': 9.4}, {'connected_gene': 'IFI44', 'score': 6.32}, {'connected_gene': 'RNU6-1102P', 'score': 0.37}, {'connected_gene': 'LOC100131495', 'score': 0.31}]
chr1	GH01I077886	77886914	77891885	2.13	[{'connected_gene': 'NEXN-AS1', 'score': 555.96}, {'connected_gene': 'NEXN', 'score': 555.62}, {'connected_gene': 'USP33', 'score': 10.37}, {'connected_gene': 'GIPC2', 'score': 7.97}, {'connected_gene': 'FUBP1', 'score': 6.25}, {'connected_gene': 'IFI44', 'score': 5.11}]
chr1	GH01I078619	78619040	78622863	1.86	[{'connected_gene': 'IFI44L', 'score': 550.77}, {'connected_gene': 'ZZZ3', 'score': 53.71}, {'connected_gene': 'ENSG00000273338', 'score': 42.24}, {'connected_gene': 'NSRP1P1', 'score': 38.95}, {'connected_gene': 'FUBP1', 'score': 37.61}, {'connected_gene': 'USP33', 'score': 20.4}, {'connected_gene': 'IFI44', 'score': 12.52}]
chr1	GH01I078625	78625996	78626055	0.5	[{'connected_gene': 'IFI44L', 'score': 550.44}, {'connected_gene': 'IFI44', 'score': 12.55}]
chr1	GH01I078649	78649196	78652124	1.62	[{'connected_gene': 'IFI44', 'score': 550.77}, {'connected_gene': 'RPL23P3', 'score': 0.37}]
chr1	GH01I077829	77829281	77835800	1.09	[{'connected_gene': 'RNA5SP21', 'score': 10.83}, {'connected_gene': 'MIGA1', 'score': 10.83}, {'connected_gene': 'ACTG1P21', 'score': 10.82}, {'connected_gene': 'USP33', 'score': 10.56}, {'connected_gene': 'IFI44', 'score': 5.16}, {'connected_gene': 'NEXN', 'score': 4.51}, {'connected_gene': 'FUBP1', 'score': 4.19}, {'connected_gene': 'NSRP1P1', 'score': 0.39}, {'connected_gene': 'LOC653631', 'score': 0.34}]
chr1	GH01I078645	78645601	78645800	0.2	[{'connected_gene': 'NSRP1P1', 'score': 5.05}, {'connected_gene': 'IFI44', 'score': 0.77}, {'connected_gene': 'IFI44L', 'score': 0.31}]