PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000379719	[[9406168, 9406394], [9424836, 9424918], [9430032, 9430186], [9431474, 9431633], [9435801, 9435958], [9438605, 9438695], [9441957, 9442052], [9442160, 9442245], [9444552, 9444687], [9445323, 9445423], [9446460, 9446537], [9446692, 9446809], [9450086, 9450176], [9450577, 9450743], [9451220, 9451381], [9452421, 9452550], [9455116, 9455183], [9455267, 9455393], [9456480, 9456578], [9457817, 9457913], [9459300, 9459521], [9459626, 9459832], [9462001, 9462208], [9463627, 9463744], [9466643, 9469673]]	[[9406310, 9406394], [9424836, 9424918], [9430032, 9430186], [9431474, 9431633], [9435801, 9435958], [9438605, 9438695], [9441957, 9442052], [9442160, 9442245], [9444552, 9444687], [9445323, 9445423], [9446460, 9446537], [9446692, 9446809], [9450086, 9450176], [9450577, 9450743], [9451220, 9451381], [9452421, 9452550], [9455116, 9455183], [9455267, 9455393], [9456480, 9456578], [9457817, 9457913], [9459300, 9459521], [9459626, 9459832], [9462001, 9462208], [9463627, 9463744], [9466643, 9466741]]
ENST00000533233	[[9406198, 9406394], [9413744, 9413867], [9430032, 9430186], [9431474, 9431579]]	[[9406310, 9406394], [9413744, 9413855]]
ENST00000527431	[[9406199, 9406394], [9430032, 9430186], [9431474, 9431633], [9435801, 9435900]]	[[9430052, 9430186], [9431474, 9431633], [9435801, 9435900]]
ENST00000533680	[[9424280, 9424297], [9424465, 9425087]]	None
ENST00000528833	[[9431615, 9431633], [9435801, 9436138]]	None
ENST00000531235	[[9441825, 9442052], [9442160, 9442216]]	None
ENST00000530037	[[9445332, 9445423], [9446460, 9446537], [9446692, 9446871]]	None
NM_006391	[[9406168, 9406394], [9424836, 9424918], [9430032, 9430186], [9431474, 9431633], [9435801, 9435958], [9438605, 9438695], [9441957, 9442052], [9442160, 9442245], [9444552, 9444687], [9445323, 9445423], [9446460, 9446537], [9446692, 9446809], [9450086, 9450176], [9450577, 9450743], [9451220, 9451381], [9452421, 9452550], [9455116, 9455183], [9455267, 9455393], [9456480, 9456578], [9457817, 9457913], [9459300, 9459521], [9459626, 9459832], [9462001, 9462208], [9463627, 9463744], [9466643, 9469674]]	[[9406310, 9406394], [9424836, 9424918], [9430032, 9430186], [9431474, 9431633], [9435801, 9435958], [9438605, 9438695], [9441957, 9442052], [9442160, 9442245], [9444552, 9444687], [9445323, 9445423], [9446460, 9446537], [9446692, 9446809], [9450086, 9450176], [9450577, 9450743], [9451220, 9451381], [9452421, 9452550], [9455116, 9455183], [9455267, 9455393], [9456480, 9456578], [9457817, 9457913], [9459300, 9459521], [9459626, 9459832], [9462001, 9462208], [9463627, 9463744], [9466643, 9466741]]

Promoter

Chrom	Start	End	Description
chr11	9406149	9406155	CAGE_peak_2_at_IPO7_5end
chr11	9406169	9406210	CAGE_peak_1_at_IPO7_5end
chr11	9459621	9459635	CAGE_peak_3_at_IPO7_5end
chr11	9466943	9466951	CAGE_peak_4_at_IPO7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I009528	9528644	9531560	1.04	[{'connected_gene': 'ZNF143', 'score': 14.7}, {'connected_gene': 'WEE1', 'score': 11.88}, {'connected_gene': 'ENSG00000238387', 'score': 11.87}, {'connected_gene': 'IPO7', 'score': 4.63}, {'connected_gene': 'PIR40365', 'score': 0.31}, {'connected_gene': 'LOC644656', 'score': 0.2}, {'connected_gene': 'GC11P009430', 'score': 0.15}]
chr11	GH11I009458	9458899	9463898	2.31	[{'connected_gene': 'ZNF143', 'score': 601.68}, {'connected_gene': 'LOC644656', 'score': 550.77}, {'connected_gene': 'SNORA3B', 'score': 46.49}, {'connected_gene': 'RPL21P97', 'score': 28.89}, {'connected_gene': 'RPL27A', 'score': 23.35}, {'connected_gene': 'TMEM9B-AS1', 'score': 11.66}, {'connected_gene': 'WEE1', 'score': 10.76}, {'connected_gene': 'IPO7', 'score': 7.78}, {'connected_gene': 'GC11P009430', 'score': 0.29}, {'connected_gene': 'PIR40365', 'score': 0.15}]
chr11	GH11I009600	9600301	9602689	1.44	[{'connected_gene': 'WEE1', 'score': 5.63}, {'connected_gene': 'SWAP70', 'score': 5.2}, {'connected_gene': 'IPO7', 'score': 4.13}, {'connected_gene': 'ZNF143', 'score': 1.34}, {'connected_gene': 'RPL23AP65', 'score': 0.77}, {'connected_gene': 'GC11P009580', 'score': 0.34}, {'connected_gene': 'GC11P009430', 'score': 0.09}]
chr11	GH11I009358	9358134	9358283	0.59	[{'connected_gene': 'SNORA3B', 'score': 9.93}, {'connected_gene': 'GC11P009354', 'score': 0.77}, {'connected_gene': 'IPO7', 'score': 0.31}]
chr11	GH11I009001	9001562	9002441	1.06	[{'connected_gene': 'NRIP3', 'score': 23.67}, {'connected_gene': 'AKIP1', 'score': 21.51}, {'connected_gene': 'SCUBE2', 'score': 19.61}, {'connected_gene': 'DENND5A', 'score': 14.76}, {'connected_gene': 'ZNF143', 'score': 5.53}, {'connected_gene': 'TMEM9B', 'score': 2.23}, {'connected_gene': 'IPO7', 'score': 1.53}, {'connected_gene': 'GC11P008977', 'score': 0.34}]
chr11	GH11I009208	9208176	9212325	1.21	[{'connected_gene': 'DENND5A', 'score': 18.14}, {'connected_gene': 'SCUBE2', 'score': 17.02}, {'connected_gene': 'IPO7', 'score': 11.83}, {'connected_gene': 'TMEM41B', 'score': 10.53}, {'connected_gene': 'GC11M009222', 'score': 0.39}]
chr11	GH11I009361	9361045	9365986	1.66	[{'connected_gene': 'DENND5A', 'score': 31.56}, {'connected_gene': 'NRIP3', 'score': 28.47}, {'connected_gene': 'SNORA3B', 'score': 16.48}, {'connected_gene': 'ZNF143', 'score': 15.37}, {'connected_gene': 'AKIP1', 'score': 12.18}, {'connected_gene': 'RPL21P97', 'score': 11.44}, {'connected_gene': 'RPL27A', 'score': 11.27}, {'connected_gene': 'IPO7', 'score': 9.64}, {'connected_gene': 'TMEM41B', 'score': 6.17}, {'connected_gene': 'TMEM9B', 'score': 2.9}, {'connected_gene': 'SWAP70', 'score': 1.25}, {'connected_gene': 'GC11P009354', 'score': 0.44}]
chr11	GH11I009158	9158912	9161155	1.01	[{'connected_gene': 'DENND5A', 'score': 32.33}, {'connected_gene': 'NRIP3', 'score': 28.15}, {'connected_gene': 'SCUBE2', 'score': 16.69}, {'connected_gene': 'TMEM41B', 'score': 9.74}, {'connected_gene': 'ZNF143', 'score': 6.51}, {'connected_gene': 'IPO7', 'score': 2.32}, {'connected_gene': 'TMEM9B', 'score': 1.52}, {'connected_gene': 'RPL27A', 'score': 1.31}, {'connected_gene': 'GC11M009222', 'score': 0.21}]
chr11	GH11I009401	9401297	9401508	0.33	[{'connected_gene': 'DENND5A', 'score': 10.97}, {'connected_gene': 'IPO7', 'score': 1.97}, {'connected_gene': 'NRIP3', 'score': 1.3}, {'connected_gene': 'GC11P009428', 'score': 0.31}]
chr11	GH11I009395	9395434	9397264	0.49	[{'connected_gene': 'DENND5A', 'score': 10.92}, {'connected_gene': 'IPO7', 'score': 0.39}, {'connected_gene': 'GC11P009428', 'score': 0.29}]
chr11	GH11I009397	9397634	9397783	0.31	[{'connected_gene': 'DENND5A', 'score': 10.92}, {'connected_gene': 'IPO7', 'score': 0.39}, {'connected_gene': 'GC11P009428', 'score': 0.29}]
chr11	GH11I009383	9383738	9386876	2.08	[{'connected_gene': 'IPO7', 'score': 556.32}, {'connected_gene': 'SNORA3B', 'score': 27.47}, {'connected_gene': 'ZNF143', 'score': 11.5}, {'connected_gene': 'RPL27A', 'score': 11.09}, {'connected_gene': 'RPL21P97', 'score': 10.51}, {'connected_gene': 'GC11P009428', 'score': 0.26}]
chr11	GH11I009214	9214658	9215600	1	[{'connected_gene': 'IPO7', 'score': 11.84}, {'connected_gene': 'DENND5A', 'score': 11.77}, {'connected_gene': 'SCUBE2', 'score': 5.09}, {'connected_gene': 'GC11M009222', 'score': 0.44}]
chr11	GH11I009215	9215845	9216988	0.43	[{'connected_gene': 'IPO7', 'score': 11.84}, {'connected_gene': 'DENND5A', 'score': 11.78}, {'connected_gene': 'TMEM41B', 'score': 10.77}, {'connected_gene': 'GC11M009222', 'score': 0.44}, {'connected_gene': 'SCUBE2', 'score': 0.18}]
chr11	GH11I009318	9318333	9318868	0.52	[{'connected_gene': 'IPO7', 'score': 12.68}, {'connected_gene': 'DENND5A', 'score': 11.31}, {'connected_gene': 'TMEM41B', 'score': 0.77}, {'connected_gene': 'GC11P009354', 'score': 0.28}]
chr11	GH11I009320	9320154	9320303	0.56	[{'connected_gene': 'IPO7', 'score': 12.68}, {'connected_gene': 'DENND5A', 'score': 11.31}, {'connected_gene': 'TMEM41B', 'score': 0.44}, {'connected_gene': 'GC11P009354', 'score': 0.29}]
chr11	GH11I009378	9378927	9379428	0.43	[{'connected_gene': 'IPO7', 'score': 0.44}, {'connected_gene': 'GC11P009354', 'score': 0.31}]
chr11	GH11I009273	9273201	9274600	1.1	[{'connected_gene': 'TRL-CAA5-1', 'score': 550.77}, {'connected_gene': 'DENND5A', 'score': 36.05}, {'connected_gene': 'NRIP3', 'score': 26.34}, {'connected_gene': 'TMEM41B', 'score': 10.56}, {'connected_gene': 'SCUBE2', 'score': 9.74}, {'connected_gene': 'ZNF143', 'score': 8.99}, {'connected_gene': 'IPO7', 'score': 2.48}, {'connected_gene': 'TMEM9B', 'score': 1.8}]
chr11	GH11I009319	9318971	9320064	1.1	[{'connected_gene': 'ENSG00000254397', 'score': 14.86}, {'connected_gene': 'TMEM41B', 'score': 14.19}, {'connected_gene': 'IPO7', 'score': 12.68}, {'connected_gene': 'DENND5A', 'score': 11.31}, {'connected_gene': 'SNORA3B', 'score': 11.22}, {'connected_gene': 'ST5', 'score': 10.43}, {'connected_gene': 'RPL21P97', 'score': 10.34}, {'connected_gene': 'SCUBE2', 'score': 8.48}, {'connected_gene': 'GC11P009354', 'score': 0.29}]