PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000554659	[[68113791, 68118198], [68120153, 68120215], [68123132, 68123306], [68126447, 68126639], [68129193, 68129252], [68141091, 68141548]]	[[68118101, 68118198], [68120153, 68120215], [68123132, 68123306], [68126447, 68126639], [68129193, 68129252], [68141091, 68141206]]
ENST00000554636	[[68117868, 68118198], [68123132, 68123306], [68126447, 68126508]]	[[68118048, 68118198], [68123132, 68123306], [68126447, 68126508]]
ENST00000556461	[[68117977, 68118198], [68120153, 68120215], [68123128, 68123306], [68126447, 68126562]]	[[68120198, 68120215], [68123128, 68123306], [68126447, 68126562]]
ENST00000216456	[[68117980, 68118198], [68120153, 68120215], [68123132, 68123306], [68126447, 68126639], [68129193, 68129252], [68129745, 68129907], [68141091, 68141327]]	[[68129887, 68129907], [68141091, 68141206]]
ENST00000553619	[[68123196, 68123306], [68126447, 68126911]]	None
ENST00000555543	[[68123226, 68123306], [68126447, 68126639], [68141091, 68141537]]	[[68126574, 68126639], [68141091, 68141206]]
NM_006370	[[68117865, 68118198], [68120153, 68120215], [68123132, 68123306], [68126447, 68126639], [68129193, 68129252], [68141091, 68141602]]	[[68118101, 68118198], [68120153, 68120215], [68123132, 68123306], [68126447, 68126639], [68129193, 68129252], [68141091, 68141206]]

Promoter

Chrom	Start	End	Description
chr14	68141300	68141368	CAGE_peak_1_at_VTI1B_5end
chr14	68141535	68141574	CAGE_peak_2_at_VTI1B_5end
chr14	68141596	68141637	CAGE_peak_3_at_VTI1B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I067709	67709410	67710533	0.66	[{'connected_gene': 'RDH11', 'score': 13.15}, {'connected_gene': 'PIGH', 'score': 11.75}, {'connected_gene': 'ENSG00000201529', 'score': 11.0}, {'connected_gene': 'ARG2', 'score': 11.0}, {'connected_gene': 'VTI1B', 'score': 6.13}, {'connected_gene': 'RN7SL369P', 'score': 0.77}, {'connected_gene': 'RPL21P9', 'score': 0.77}, {'connected_gene': 'RDH12', 'score': 0.44}]
chr14	GH14I067666	67666142	67667913	0.89	[{'connected_gene': 'ARG2', 'score': 21.35}, {'connected_gene': 'ENSG00000201529', 'score': 12.86}, {'connected_gene': 'RDH11', 'score': 12.79}, {'connected_gene': 'PIGH', 'score': 11.76}, {'connected_gene': 'RDH12', 'score': 11.53}, {'connected_gene': 'RN7SL369P', 'score': 11.52}, {'connected_gene': 'VTI1B', 'score': 5.88}, {'connected_gene': 'GC14M067658', 'score': 0.44}, {'connected_gene': 'ENSG00000258466', 'score': 0.34}]
chr14	GH14I067668	67668086	67668888	0.59	[{'connected_gene': 'ARG2', 'score': 23.77}, {'connected_gene': 'RDH11', 'score': 13.07}, {'connected_gene': 'ENSG00000201529', 'score': 12.85}, {'connected_gene': 'PIGH', 'score': 11.76}, {'connected_gene': 'RDH12', 'score': 11.53}, {'connected_gene': 'RN7SL369P', 'score': 11.52}, {'connected_gene': 'VTI1B', 'score': 0.44}, {'connected_gene': 'GC14M067658', 'score': 0.39}, {'connected_gene': 'ENSG00000258466', 'score': 0.34}]
chr14	GH14I068277	68277960	68287296	1.58	[{'connected_gene': 'PPIAP6', 'score': 5.1}, {'connected_gene': 'VTI1B', 'score': 4.33}, {'connected_gene': 'RAD51B', 'score': 1.65}, {'connected_gene': 'GC14P068302', 'score': 0.34}, {'connected_gene': 'RN7SL108P', 'score': 0.25}]
chr14	GH14I067738	67738304	67739933	1.14	[{'connected_gene': 'ZFYVE26', 'score': 11.78}, {'connected_gene': 'RDH11', 'score': 7.29}, {'connected_gene': 'RDH12', 'score': 6.0}, {'connected_gene': 'PIGH', 'score': 5.2}, {'connected_gene': 'VTI1B', 'score': 5.0}, {'connected_gene': 'ENSG00000271697', 'score': 0.77}, {'connected_gene': 'RN7SL213P', 'score': 0.39}]
chr14	GH14I068290	68290993	68298762	1.42	[{'connected_gene': 'ZFYVE26', 'score': 4.87}, {'connected_gene': 'VTI1B', 'score': 4.71}, {'connected_gene': 'GC14P068302', 'score': 0.44}, {'connected_gene': 'RN7SL108P', 'score': 0.22}, {'connected_gene': 'RAD51B', 'score': 0.04}]
chr14	GH14I067679	67679601	67681496	1.1	[{'connected_gene': 'RDH12', 'score': 17.64}, {'connected_gene': 'RN7SL369P', 'score': 11.75}, {'connected_gene': 'PIGH', 'score': 11.13}, {'connected_gene': 'PLEKHH1', 'score': 10.5}, {'connected_gene': 'ARG2', 'score': 9.6}, {'connected_gene': 'ENSG00000258466', 'score': 0.44}, {'connected_gene': 'VTI1B', 'score': 0.44}, {'connected_gene': 'GC14P067688', 'score': 0.44}, {'connected_gene': 'RDH11', 'score': 0.37}]
chr14	GH14I067748	67748918	67751036	0.31	[{'connected_gene': 'RN7SL213P', 'score': 550.77}, {'connected_gene': 'ARG2', 'score': 11.09}, {'connected_gene': 'PIGH', 'score': 10.02}, {'connected_gene': 'VTI1B', 'score': 4.94}, {'connected_gene': 'ENSG00000271697', 'score': 0.39}, {'connected_gene': 'ZFYVE26', 'score': 0.2}]
chr14	GH14I067673	67673352	67675832	2.01	[{'connected_gene': 'VTI1B', 'score': 550.77}, {'connected_gene': 'PIGH', 'score': 15.72}, {'connected_gene': 'RDH11', 'score': 13.1}, {'connected_gene': 'RDH12', 'score': 11.75}, {'connected_gene': 'RN7SL369P', 'score': 11.73}, {'connected_gene': 'ARG2', 'score': 9.34}, {'connected_gene': 'EIF2S1', 'score': 3.7}, {'connected_gene': 'GC14M067658', 'score': 0.37}, {'connected_gene': 'ENSG00000258466', 'score': 0.37}]
chr14	GH14I067733	67733264	67735978	0.43	[{'connected_gene': 'ENSG00000271697', 'score': 550.77}, {'connected_gene': 'RDH11', 'score': 13.24}, {'connected_gene': 'VTI1B', 'score': 5.06}, {'connected_gene': 'RPL21P9', 'score': 0.34}, {'connected_gene': 'RDH12', 'score': 0.29}, {'connected_gene': 'ZFYVE26', 'score': 0.18}]
chr14	GH14I067721	67721904	67722800	0.84	[{'connected_gene': 'ENSG00000201529', 'score': 10.99}, {'connected_gene': 'ARG2', 'score': 10.99}, {'connected_gene': 'PIGH', 'score': 10.48}, {'connected_gene': 'VTI1B', 'score': 6.08}, {'connected_gene': 'RPL21P9', 'score': 0.44}, {'connected_gene': 'ENSG00000271697', 'score': 0.39}, {'connected_gene': 'RDH12', 'score': 0.34}]
chr14	GH14I067650	67650466	67651587	0.31	[{'connected_gene': 'GC14M067653', 'score': 550.77}, {'connected_gene': 'COX7A2P1', 'score': 550.77}, {'connected_gene': 'VTI1B', 'score': 17.57}, {'connected_gene': 'ENSG00000201529', 'score': 12.44}, {'connected_gene': 'ARG2', 'score': 12.44}]