PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000296802	[[74062816, 74063188], [74064755, 74064943], [74065038, 74065189], [74066455, 74066635], [74069692, 74069885], [74072428, 74072737]]	[[74063185, 74063188], [74064755, 74064943], [74065038, 74065189], [74066455, 74066635], [74069692, 74069885], [74072428, 74072496]]
ENST00000514918	[[74063072, 74063188], [74064755, 74064943], [74065038, 74065379]]	None
ENST00000513356	[[74063087, 74063188], [74064755, 74064943], [74065038, 74065189], [74066455, 74066635], [74067301, 74067478]]	None
ENST00000515524	[[74065122, 74065189], [74066455, 74066635], [74072428, 74072629]]	[[74065122, 74065189], [74066455, 74066635], [74072428, 74072476]]
NM_001271665	[[74062815, 74063188], [74064755, 74064943], [74065038, 74065189], [74066455, 74066635], [74072428, 74072737]]	[[74063185, 74063188], [74064755, 74064943], [74065038, 74065189], [74066455, 74066635], [74072428, 74072476]]
NM_014886	[[74062815, 74063188], [74064755, 74064943], [74065038, 74065189], [74066455, 74066635], [74069692, 74069885], [74072428, 74072737]]	[[74063185, 74063188], [74064755, 74064943], [74065038, 74065189], [74066455, 74066635], [74069692, 74069885], [74072428, 74072496]]
NR_073403	[[74062815, 74063188], [74064755, 74064943], [74065038, 74065189], [74066455, 74066635], [74068137, 74068246], [74069692, 74069885], [74072428, 74072737]]	None

Promoter

Chrom	Start	End	Description
chr5	74062806	74062840	CAGE_peak_3_at_NSA2_5end
chr5	74063059	74063089	CAGE_peak_1_at_NSA2_5end
chr5	74063120	74063131	CAGE_peak_2_at_NSA2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I074864	74864472	74870668	1.95	[{'connected_gene': 'FAM169A', 'score': 554.88}, {'connected_gene': 'LOC441086', 'score': 550.77}, {'connected_gene': 'NSA2', 'score': 79.43}, {'connected_gene': 'RPS26P26', 'score': 11.02}, {'connected_gene': 'GFM2', 'score': 4.89}, {'connected_gene': 'GC05M074884', 'score': 0.37}]
chr5	GH05I074798	74798798	74800238	0.31	[{'connected_gene': 'LOC260421', 'score': 550.77}, {'connected_gene': 'NSA2', 'score': 40.1}, {'connected_gene': 'RNU6-658P', 'score': 9.86}, {'connected_gene': 'GC05P074837', 'score': 0.28}, {'connected_gene': 'FAM169A', 'score': 0.2}]
chr5	GH05I075715	75715814	75718085	2.08	[{'connected_gene': 'POC5', 'score': 573.14}, {'connected_gene': 'LOC441087', 'score': 550.77}, {'connected_gene': 'RPS26P26', 'score': 32.35}, {'connected_gene': 'NSA2', 'score': 10.74}, {'connected_gene': 'F2R', 'score': 10.1}, {'connected_gene': 'ANKDD1B', 'score': 6.97}, {'connected_gene': 'RNU6-680P', 'score': 0.44}]
chr5	GH05I074764	74764568	74768503	2.3	[{'connected_gene': 'NSA2', 'score': 667.68}, {'connected_gene': 'GFM2', 'score': 557.52}, {'connected_gene': 'RPS26P26', 'score': 28.25}, {'connected_gene': 'POLK', 'score': 23.58}, {'connected_gene': 'POC5', 'score': 11.82}, {'connected_gene': 'ENSG00000272040', 'score': 11.22}, {'connected_gene': 'RNU6-658P', 'score': 10.3}, {'connected_gene': 'FAM169A', 'score': 6.87}]
chr5	GH05I074815	74815410	74818790	0.46	[{'connected_gene': 'NSA2', 'score': 89.53}, {'connected_gene': 'LOC260421', 'score': 0.37}, {'connected_gene': 'GC05P074837', 'score': 0.34}, {'connected_gene': 'FAM169A', 'score': 0.25}]
chr5	GH05I074849	74849314	74852867	0.98	[{'connected_gene': 'NSA2', 'score': 89.5}, {'connected_gene': 'RNU6-1330P', 'score': 10.62}, {'connected_gene': 'FAM169A', 'score': 6.11}, {'connected_gene': 'GC05M074847', 'score': 0.77}, {'connected_gene': 'LOC441086', 'score': 0.39}]
chr5	GH05I074832	74832682	74834538	0.81	[{'connected_gene': 'NSA2', 'score': 40.01}, {'connected_gene': 'RNU6-1330P', 'score': 11.88}, {'connected_gene': 'RNU6-658P', 'score': 10.2}, {'connected_gene': 'GC05P074837', 'score': 0.77}, {'connected_gene': 'FAM169A', 'score': 0.29}, {'connected_gene': 'LOC260421', 'score': 0.29}]
chr5	GH05I074761	74761140	74764436	0.85	[{'connected_gene': 'NSA2', 'score': 95.31}, {'connected_gene': 'RNU6-658P', 'score': 11.19}, {'connected_gene': 'GFM2', 'score': 6.56}, {'connected_gene': 'GC05M074726', 'score': 0.28}]
chr5	GH05I074672	74672985	74673813	0.87	[{'connected_gene': 'NSA2', 'score': 16.77}, {'connected_gene': 'RNU6-658P', 'score': 10.28}, {'connected_gene': 'HEXB', 'score': 6.19}, {'connected_gene': 'ENC1', 'score': 0.29}, {'connected_gene': 'GC05M074726', 'score': 0.23}]
chr5	GH05I074872	74872002	74872199	0.2	[{'connected_gene': 'NSA2', 'score': 70.9}, {'connected_gene': 'RNU6-658P', 'score': 9.62}, {'connected_gene': 'FAM169A', 'score': 0.44}, {'connected_gene': 'GC05M074884', 'score': 0.39}]
chr5	GH05I074882	74882302	74884440	0.2	[{'connected_gene': 'GC05M074884', 'score': 550.77}, {'connected_gene': 'ENSG00000212363', 'score': 550.77}, {'connected_gene': 'NSA2', 'score': 21.5}, {'connected_gene': 'RNU6-1330P', 'score': 10.92}, {'connected_gene': 'RNU6-658P', 'score': 10.11}, {'connected_gene': 'LOC105379039', 'score': 0.39}]
chr5	GH05I075457	75457660	75457977	0.73	[{'connected_gene': 'GC05P075458', 'score': 550.77}, {'connected_gene': 'RPS26P26', 'score': 16.62}, {'connected_gene': 'NSA2', 'score': 12.12}, {'connected_gene': 'HEXB', 'score': 9.91}, {'connected_gene': 'POC5', 'score': 8.48}, {'connected_gene': 'ENSG00000271815', 'score': 8.15}, {'connected_gene': 'COL4A3BP', 'score': 0.23}, {'connected_gene': 'GC05P075375', 'score': 0.18}]