PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
RAPGEF3	5	NUP205	3	affinity chromatography technology	Liu C (2010)	1
RAPGEF3	5	NUP98	5	affinity chromatography technology	Liu C (2010)	1
RAPGEF3	5	RANBP2	9	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Gloerich M (2011), Gloerich M (2011), Liu C (2010), Liu C (2010)	4
RANBP2	9	KPNB1	3	pull down, pull down, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Yaseen NR (1999), Delphin C (1997), Ben-Efraim I (2001), Walther TC (2003), Chi NC (1996), Chi NC (1996), Hein MY (2015)	7
RAPGEF3	5	RAP2A	0	enzymatic study	de Rooij J (2000)	1
RAPGEF3	5	RAP1A	1	enzymatic study	de Rooij J (2000)	1
PNMA1	0	RAPGEF3	5	two hybrid	Rolland T (2014)	1
KPNB1	3	RAN	1	far western blotting, pull down, pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, biochemical, affinity chromatography technology, pull down, biochemical, pull down, biochemical, affinity chromatography technology, affinity chromatography technology	Kutay U (1997), Percipalle P (1997), Plafker K (2000), Ciciarello M (2010), Hieda M (1999), Hieda M (1999), Kutay U (2000), Kutay U (2000), Chi NC (1996), Chi NC (1996), Lipowsky G (2000), Chi NC (1997), Havugimana PC (2012), Goerlich D (1997), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	17
RANBP2	9	RAN	1	pull down, affinity chromatography technology, two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, biochemical, affinity chromatography technology	Yaseen NR (1999), Liu C (2010), Yokoyama N (1995), Yokoyama N (1995), Wang J (2011), Nishitani H (2001), Wan C (2015), Huttlin EL (2017)	8
RAPGEF3	5	RAN	1	affinity chromatography technology	Liu C (2010)	1
RAPGEF3	5	KPNB1	3	affinity chromatography technology	Liu C (2010)	1
NUP98	5	KPNB1	3	pull down, pull down, pull down, biochemical, affinity chromatography technology	Moroianu J (1997), Bonifaci N (1997), Schmidt HB (2015), Wan C (2015), Hein MY (2015)	5
AP2B1	3	RAPGEF3	5	two hybrid	Rolland T (2014)	1
KPNB1	3	NUP205	3	affinity chromatography technology	Hein MY (2015)	1