PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr4	146019296	146019330	CAGE_peak_2_at_ANAPC10_5end
chr4	146019335	146019377	CAGE_peak_1_at_ANAPC10_5end
chr4	146019721	146019724	CAGE_peak_4_at_ANAPC10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I145812	145812255	145813860	0.97	[{'connected_gene': 'OTUD4', 'score': 29.87}, {'connected_gene': 'ENSG00000248356', 'score': 13.55}, {'connected_gene': 'SLC10A7', 'score': 12.19}, {'connected_gene': 'ANAPC10', 'score': 10.03}, {'connected_gene': 'LSM6', 'score': 9.83}, {'connected_gene': 'ENSG00000279481', 'score': 0.37}, {'connected_gene': 'GC04M145759', 'score': 0.23}, {'connected_gene': 'ZNF827', 'score': 0.13}]
chr4	GH04I145175	145175643	145183385	2.47	[{'connected_gene': 'OTUD4', 'score': 551.96}, {'connected_gene': 'LOC105377463', 'score': 550.77}, {'connected_gene': 'ANAPC10', 'score': 11.83}, {'connected_gene': 'ABCE1', 'score': 9.89}, {'connected_gene': 'MMAA', 'score': 2.38}]
chr4	GH04I145130	145130191	145131800	0.69	[{'connected_gene': 'OTUD4', 'score': 11.53}, {'connected_gene': 'ANAPC10', 'score': 11.32}, {'connected_gene': 'ABCE1', 'score': 11.32}, {'connected_gene': 'ENSG00000238713', 'score': 0.37}, {'connected_gene': 'GC04M145151', 'score': 0.37}]
chr4	GH04I145132	145132069	145133232	0.7	[{'connected_gene': 'OTUD4', 'score': 11.53}, {'connected_gene': 'ANAPC10', 'score': 11.32}, {'connected_gene': 'ABCE1', 'score': 11.32}, {'connected_gene': 'ENSG00000238713', 'score': 0.37}, {'connected_gene': 'GC04M145151', 'score': 0.37}]
chr4	GH04I145103	145103106	145103162	0.24	[{'connected_gene': 'OTUD4', 'score': 10.99}, {'connected_gene': 'ANAPC10', 'score': 0.77}, {'connected_gene': 'ABCE1', 'score': 0.44}, {'connected_gene': 'ENSG00000238713', 'score': 0.25}, {'connected_gene': 'GC04M145151', 'score': 0.25}]
chr4	GH04I145034	145034180	145036033	1.23	[{'connected_gene': 'RN7SKP235', 'score': 550.77}, {'connected_gene': 'HHIP', 'score': 4.4}, {'connected_gene': 'ANAPC10', 'score': 0.21}, {'connected_gene': 'ENSG00000251452', 'score': 0.14}]
chr4	GH04I145043	145043380	145043587	0.4	[{'connected_gene': 'RN7SKP235', 'score': 0.44}, {'connected_gene': 'ABCE1', 'score': 0.23}, {'connected_gene': 'ANAPC10', 'score': 0.22}]
chr4	GH04I145036	145036340	145037500	0.2	[{'connected_gene': 'RN7SKP235', 'score': 550.77}, {'connected_gene': 'ANAPC10', 'score': 0.21}, {'connected_gene': 'ABCE1', 'score': 0.21}]
chr4	GH04I145058	145058860	145059746	0.2	[{'connected_gene': 'RN7SKP235', 'score': 0.34}, {'connected_gene': 'ANAPC10', 'score': 0.28}, {'connected_gene': 'ABCE1', 'score': 0.28}]
chr4	GH04I145012	145012601	145014200	0.92	[{'connected_gene': 'RN7SKP235', 'score': 0.34}, {'connected_gene': 'ANAPC10', 'score': 0.17}, {'connected_gene': 'ENSG00000251452', 'score': 0.16}]
chr4	GH04I145124	145124997	145127053	0.46	[{'connected_gene': 'ANAPC10', 'score': 11.55}, {'connected_gene': 'ABCE1', 'score': 11.55}, {'connected_gene': 'OTUD4', 'score': 11.52}, {'connected_gene': 'ENSG00000238713', 'score': 0.34}, {'connected_gene': 'GC04M145151', 'score': 0.34}]
chr4	GH04I145096	145096387	145100407	2.27	[{'connected_gene': 'ANAPC10', 'score': 550.77}, {'connected_gene': 'ABCE1', 'score': 550.77}, {'connected_gene': 'ENSG00000248356', 'score': 11.79}, {'connected_gene': 'OTUD4', 'score': 10.98}]
chr4	GH04I145065	145065915	145066801	0.59	[{'connected_gene': 'ANAPC10', 'score': 0.29}, {'connected_gene': 'ABCE1', 'score': 0.29}, {'connected_gene': 'RN7SKP235', 'score': 0.29}]
chr4	GH04I145084	145084029	145084178	0.38	[{'connected_gene': 'ANAPC10', 'score': 0.39}, {'connected_gene': 'ABCE1', 'score': 0.39}, {'connected_gene': 'RN7SKP235', 'score': 0.25}]
chr4	GH04I145057	145057421	145058288	0.2	[{'connected_gene': 'ANAPC10', 'score': 11.01}, {'connected_gene': 'ABCE1', 'score': 11.01}, {'connected_gene': 'RN7SKP235', 'score': 0.34}]
chr4	GH04I145085	145084420	145084970	0.2	[{'connected_gene': 'ANAPC10', 'score': 0.39}, {'connected_gene': 'ABCE1', 'score': 0.39}, {'connected_gene': 'RN7SKP235', 'score': 0.25}]
chr4	GH04I145074	145074352	145075383	0.2	[{'connected_gene': 'ANAPC10', 'score': 11.84}, {'connected_gene': 'ABCE1', 'score': 11.84}, {'connected_gene': 'RN7SKP235', 'score': 0.28}]
chr4	GH04I145075	145075399	145076317	0.31	[{'connected_gene': 'ANAPC10', 'score': 11.84}, {'connected_gene': 'ABCE1', 'score': 11.84}, {'connected_gene': 'RN7SKP235', 'score': 0.26}]
chr4	GH04I145195	145195209	145196298	0.69	[{'connected_gene': 'ANAPC10', 'score': 10.38}, {'connected_gene': 'ABCE1', 'score': 10.38}, {'connected_gene': 'LOC105377465', 'score': 0.44}, {'connected_gene': 'GC04P145186', 'score': 0.44}]
chr4	GH04I145171	145171637	145172242	0.46	[{'connected_gene': 'ANAPC10', 'score': 10.81}, {'connected_gene': 'ABCE1', 'score': 10.81}, {'connected_gene': 'LOC105377463', 'score': 0.44}, {'connected_gene': 'OTUD4', 'score': 0.44}, {'connected_gene': 'GC04M145156', 'score': 0.37}]
chr4	GH04I144651	144651690	144658513	0.62	[{'connected_gene': 'ENSG00000248356', 'score': 11.39}, {'connected_gene': 'OTUD4', 'score': 10.34}, {'connected_gene': 'ANAPC10', 'score': 10.05}, {'connected_gene': 'RTN3P1', 'score': 5.6}, {'connected_gene': 'HHIP-AS1', 'score': 0.44}, {'connected_gene': 'HHIP', 'score': 0.44}, {'connected_gene': 'GYPA', 'score': 0.08}]
chr4	GH04I144948	144948089	144948258	0.31	[{'connected_gene': 'ENSG00000251452', 'score': 0.31}, {'connected_gene': 'RN7SKP235', 'score': 0.17}, {'connected_gene': 'ANAPC10', 'score': 0.1}]
chr4	GH04I144938	144938849	144940129	0.2	[{'connected_gene': 'ENSG00000251452', 'score': 0.37}, {'connected_gene': 'RN7SKP235', 'score': 0.15}, {'connected_gene': 'ANAPC10', 'score': 0.1}]
chr4	GH04I144905	144905857	144907143	0.74	[{'connected_gene': 'ENSG00000251452', 'score': 0.39}, {'connected_gene': 'PIR60097', 'score': 0.39}, {'connected_gene': 'ANAPC10', 'score': 0.08}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000506851	[[145888263, 145888312], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146019282, 146019365]]	None
ENST00000502651	[[145916076, 145916755], [146002811, 146002902], [146019271, 146019368]]	None
ENST00000507656	[[145916151, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146019271, 146019353]]	[[145916524, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017251]]
ENST00000451299	[[145916309, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146018839, 146018912], [146019271, 146019341]]	[[145916524, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017251]]
ENST00000309439	[[145916309, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146019282, 146019365]]	[[145916524, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017251]]
ENST00000510270	[[145916312, 145916755], [145920408, 145920446], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146018839, 146018912], [146019271, 146019341]]	None
ENST00000511466	[[145916347, 145916755], [146002811, 146002902], [146017136, 146017263], [146019282, 146019343]]	None
ENST00000514390	[[145916606, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146019387, 146019693]]	[[145916606, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017251]]
ENST00000513054	[[145916607, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146018646, 146018714], [146018839, 146018912], [146019271, 146019332]]	[[145916607, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017251]]
ENST00000502562	[[145954196, 145954523], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146019271, 146019348]]	None
ENST00000512680	[[145974830, 145974932], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146018839, 146018903]]	[[145974878, 145974932], [145985723, 145985844], [146002811, 146002902], [146017136, 146017251]]
ENST00000508087	[[145985137, 145985513], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146019282, 146019316]]	None
ENST00000504721	[[145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146018396, 146018534]]	[[145985723, 145985844], [146002811, 146002902], [146017136, 146017251]]
ENST00000514704	[[146002694, 146002902], [146017136, 146017263], [146018839, 146019319]]	None
ENST00000507134	[[146002740, 146002902], [146017136, 146017263], [146018646, 146018714], [146018839, 146019335]]	None
ENST00000502847	[[146002811, 146002902], [146017136, 146017263], [146018646, 146018714], [146018839, 146018912], [146019038, 146019287]]	[[146002811, 146002902], [146017136, 146017251]]
NM_001318367	[[145915726, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146018396, 146018534]]	[[145916524, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146018396, 146018486]]
NM_001256709	[[145915726, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146018646, 146018714], [146018839, 146018912], [146019271, 146019371]]	[[145916524, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146018646, 146018667]]
NM_001256711	[[145915726, 145916755], [145920408, 145920446], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146018839, 146018912], [146019271, 146019371]]	[[145920428, 145920446], [145985723, 145985844], [146002811, 146002902], [146017136, 146017251]]
NM_001256707	[[145915726, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146018839, 146018912], [146019271, 146019371]]	[[145916524, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017251]]
NM_001256710	[[145915726, 145916755], [145920408, 145920446], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146019271, 146019371]]	[[145920428, 145920446], [145985723, 145985844], [146002811, 146002902], [146017136, 146017251]]
NM_001256706	[[145915726, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146019271, 146019371]]	[[145916524, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017251]]
NR_046345	[[145915726, 145916755], [146002811, 146002902], [146019271, 146019371]]	None
NM_014885	[[145915726, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146019282, 146019371]]	[[145916524, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017251]]
NM_001256712	[[145915726, 145916755], [146002811, 146002902], [146017136, 146017263], [146019282, 146019371]]	[[145916709, 145916755], [146002811, 146002902], [146017136, 146017251]]
NM_001256708	[[145915726, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017263], [146019387, 146019693]]	[[145916524, 145916755], [145985723, 145985844], [146002811, 146002902], [146017136, 146017251]]