PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367651	[[139693392, 139695089], [139695549, 139695757]]	[[139694268, 139695081]]
ENST00000537332	[[139693395, 139695089], [139695268, 139695350]]	[[139694268, 139695081]]
ENST00000536159	[[139693395, 139695089], [139695400, 139695499]]	[[139694268, 139695081]]
NM_001168389	[[139693391, 139695089], [139695268, 139695350]]	[[139694268, 139695089], [139695268, 139695275]]
NM_001168388	[[139693391, 139695089], [139695400, 139695499]]	[[139694268, 139695081]]
NM_006079	[[139693391, 139695089], [139695549, 139695787]]	[[139694268, 139695081]]

Promoter

Chrom	Start	End	Description
chr6	139694564	139694581	CAGE_peak_13_at_CITED2_5end
chr6	139694678	139694744	CAGE_peak_4_at_CITED2_5end
chr6	139694819	139694929	CAGE_peak_3_at_CITED2_5end
chr6	139694931	139695001	CAGE_peak_2_at_CITED2_5end
chr6	139695015	139695033	CAGE_peak_8_at_CITED2_5end
chr6	139695036	139695053	CAGE_peak_6_at_CITED2_5end
chr6	139695061	139695096	CAGE_peak_7_at_CITED2_5end
chr6	139695775	139695795	CAGE_peak_1_at_CITED2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I139443	139443461	139450380	1.19	[{'connected_gene': 'LINC01625', 'score': 0.31}, {'connected_gene': 'CITED2', 'score': 0.19}]
chr6	GH06I139435	139435975	139437393	0.69	[{'connected_gene': 'LINC01625', 'score': 0.28}, {'connected_gene': 'CITED2', 'score': 0.21}]
chr6	GH06I139444	139443264	139443413	0.57	[{'connected_gene': 'LINC01625', 'score': 0.29}, {'connected_gene': 'CITED2', 'score': 0.2}]
chr6	GH06I139452	139452264	139452801	0.72	[{'connected_gene': 'LINC01625', 'score': 0.34}, {'connected_gene': 'CITED2', 'score': 0.18}]
chr6	GH06I139466	139466032	139466907	0.31	[{'connected_gene': 'LINC01625', 'score': 0.44}, {'connected_gene': 'CITED2', 'score': 0.16}]
chr6	GH06I139472	139472360	139475940	1.1	[{'connected_gene': 'LINC01625', 'score': 550.77}, {'connected_gene': 'CITED2', 'score': 0.15}]
chr6	GH06I139433	139433800	139434000	0.38	[{'connected_gene': 'LINC01625', 'score': 0.26}, {'connected_gene': 'CITED2', 'score': 0.22}]
chr6	GH06I139442	139442135	139442944	0.82	[{'connected_gene': 'ABRACL', 'score': 1.31}, {'connected_gene': 'LINC01625', 'score': 0.29}, {'connected_gene': 'CITED2', 'score': 0.2}]
chr6	GH06I139532	139532949	139535229	1.35	[{'connected_gene': 'HECA', 'score': 1.82}, {'connected_gene': 'CITED2', 'score': 1.52}, {'connected_gene': 'LOC105378023', 'score': 0.44}, {'connected_gene': 'LOC105378024', 'score': 0.39}]
chr6	GH06I138403	138403039	138406693	2.09	[{'connected_gene': 'HEBP2', 'score': 598.66}, {'connected_gene': 'MARCKSL1P2', 'score': 550.77}, {'connected_gene': 'GC06M138402', 'score': 550.77}, {'connected_gene': 'CITED2', 'score': 10.44}, {'connected_gene': 'PIR51373', 'score': 0.39}]
chr6	GH06I139289	139289364	139294020	2.15	[{'connected_gene': 'TXLNB', 'score': 607.69}, {'connected_gene': 'LOC102723690', 'score': 11.78}, {'connected_gene': 'CITED2', 'score': 10.11}, {'connected_gene': 'HECA', 'score': 8.48}, {'connected_gene': 'REPS1', 'score': 2.15}, {'connected_gene': 'ABRACL', 'score': 1.58}, {'connected_gene': 'ENSG00000272446', 'score': 0.39}]
chr6	GH06I139585	139585602	139591400	1.37	[{'connected_gene': 'CITED2', 'score': 11.79}, {'connected_gene': 'ATP5PBP6', 'score': 0.31}, {'connected_gene': 'LOC105378024', 'score': 0.26}]
chr6	GH06I139595	139595707	139599599	1.44	[{'connected_gene': 'CITED2', 'score': 5.19}, {'connected_gene': 'ATP5PBP6', 'score': 0.37}, {'connected_gene': 'LOC105378024', 'score': 0.23}]
chr6	GH06I139378	139378274	139379568	1.03	[{'connected_gene': 'CITED2', 'score': 0.77}, {'connected_gene': 'LINC01625', 'score': 0.15}]
chr6	GH06I139399	139399789	139399800	0.22	[{'connected_gene': 'CITED2', 'score': 0.31}, {'connected_gene': 'LINC01625', 'score': 0.19}]
chr6	GH06I139381	139381384	139381533	0.58	[{'connected_gene': 'CITED2', 'score': 0.44}, {'connected_gene': 'LINC01625', 'score': 0.16}]
chr6	GH06I139392	139392617	139393652	0.71	[{'connected_gene': 'CITED2', 'score': 0.37}, {'connected_gene': 'LINC01625', 'score': 0.18}]
chr6	GH06I139395	139395826	139396363	0.66	[{'connected_gene': 'CITED2', 'score': 0.34}, {'connected_gene': 'LINC01625', 'score': 0.18}]
chr6	GH06I139380	139380184	139380333	0.46	[{'connected_gene': 'CITED2', 'score': 0.44}, {'connected_gene': 'LINC01625', 'score': 0.16}]
chr6	GH06I139382	139382699	139385410	0.31	[{'connected_gene': 'CITED2', 'score': 0.44}, {'connected_gene': 'LINC01625', 'score': 0.16}]
chr6	GH06I139406	139406224	139409716	1.2	[{'connected_gene': 'CITED2', 'score': 0.29}, {'connected_gene': 'LINC01625', 'score': 0.2}]
chr6	GH06I139402	139402406	139404134	0.94	[{'connected_gene': 'CITED2', 'score': 0.31}, {'connected_gene': 'LINC01625', 'score': 0.19}]
chr6	GH06I138582	138582724	138582873	0.76	[{'connected_gene': 'CITED2', 'score': 11.74}, {'connected_gene': 'PERP', 'score': 11.16}, {'connected_gene': 'LOC100129577', 'score': 0.2}, {'connected_gene': 'NHSL1', 'score': 0.14}, {'connected_gene': 'ENSG00000274594', 'score': 0.13}]
chr6	GH06I139538	139538286	139541414	1.1	[{'connected_gene': 'CITED2', 'score': 3.41}, {'connected_gene': 'HECA', 'score': 1.51}, {'connected_gene': 'LOC105378024', 'score': 0.44}, {'connected_gene': 'LOC105378023', 'score': 0.39}]
chr6	GH06I139576	139576742	139579383	1.35	[{'connected_gene': 'CITED2', 'score': 12.7}, {'connected_gene': 'LOC105378024', 'score': 0.29}, {'connected_gene': 'ATP5PBP6', 'score': 0.28}]
chr6	GH06I139366	139366628	139377984	2.35	[{'connected_gene': 'CITED2', 'score': 550.77}, {'connected_gene': 'LOC102723690', 'score': 10.83}, {'connected_gene': 'REPS1', 'score': 10.02}, {'connected_gene': 'HEBP2', 'score': 4.93}, {'connected_gene': 'LOC100129844', 'score': 0.29}]
chr6	GH06I139743	139743041	139745515	1.36	[{'connected_gene': 'CITED2', 'score': 1.53}, {'connected_gene': 'FILNC1', 'score': 0.31}, {'connected_gene': 'GC06P139661', 'score': 0.18}]
chr6	GH06I139762	139762123	139767224	1.7	[{'connected_gene': 'CITED2', 'score': 1.27}, {'connected_gene': 'FILNC1', 'score': 0.44}, {'connected_gene': 'GC06P139661', 'score': 0.15}]
chr6	GH06I139707	139707552	139710060	1.15	[{'connected_gene': 'CITED2', 'score': 2.24}, {'connected_gene': 'GC06P139661', 'score': 0.25}, {'connected_gene': 'FILNC1', 'score': 0.21}]
chr6	GH06I139343	139343201	139343433	0.78	[{'connected_gene': 'LOC102723690', 'score': 11.22}, {'connected_gene': 'LOC100129844', 'score': 0.44}, {'connected_gene': 'CITED2', 'score': 0.29}]
chr6	GH06I139364	139364401	139364653	1	[{'connected_gene': 'ENSG00000231329', 'score': 12.17}, {'connected_gene': 'LOC102723690', 'score': 11.02}, {'connected_gene': 'HECA', 'score': 10.78}, {'connected_gene': 'CITED2', 'score': 0.39}, {'connected_gene': 'LOC100129844', 'score': 0.31}]
chr6	GH06I139349	139349544	139349713	0.46	[{'connected_gene': 'ENSG00000231329', 'score': 11.65}, {'connected_gene': 'LOC102723690', 'score': 10.8}, {'connected_gene': 'LOC100129844', 'score': 0.39}, {'connected_gene': 'CITED2', 'score': 0.31}]