PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000418917	[[100428204, 100428275], [100432486, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455548], [100463676, 100463775], [100466992, 100467786]]	[[100432529, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455548], [100463676, 100463775], [100466992, 100467375]]
ENST00000490574	[[100428221, 100428275], [100432486, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455560], [100463676, 100463775], [100466992, 100467771]]	[[100432529, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455560], [100463676, 100463775], [100466992, 100467375]]
ENST00000240851	[[100428268, 100428565], [100432486, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455560], [100463676, 100463775], [100466992, 100467810]]	[[100432529, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455560], [100463676, 100463775], [100466992, 100467375]]
ENST00000479672	[[100428315, 100428565], [100429814, 100429912], [100432486, 100432713], [100438818, 100438902], [100447555, 100447672]]	[[100432529, 100432713], [100438818, 100438902], [100447555, 100447672]]
ENST00000476228	[[100428449, 100428565], [100432486, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455548], [100463676, 100463775], [100466992, 100467808]]	[[100432529, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455548], [100463676, 100463775], [100466992, 100467375]]
ENST00000463568	[[100428456, 100428665], [100432486, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451407]]	[[100432529, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451407]]
ENST00000487505	[[100428813, 100429139], [100432486, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451480]]	[[100432529, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451480]]
ENST00000481203	[[100461319, 100463775], [100466992, 100467807]]	None
NM_001007565	[[100428133, 100428275], [100432486, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455560], [100463676, 100463775], [100466992, 100467811]]	[[100432529, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455560], [100463676, 100463775], [100466992, 100467375]]
NM_001195479	[[100428174, 100428565], [100432486, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455548], [100463676, 100463775], [100466992, 100467811]]	[[100432529, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455548], [100463676, 100463775], [100466992, 100467375]]
NM_006070	[[100428174, 100428565], [100432486, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455560], [100463676, 100463775], [100466992, 100467811]]	[[100432529, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455560], [100463676, 100463775], [100466992, 100467375]]
NM_001195478	[[100428385, 100428432], [100432486, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455560], [100463676, 100463775], [100466992, 100467811]]	[[100432529, 100432713], [100438818, 100438902], [100447555, 100447702], [100451351, 100451516], [100455419, 100455560], [100463676, 100463775], [100466992, 100467375]]

Promoter

Chrom	Start	End	Description
chr3	100428140	100428151	CAGE_peak_7_at_TFG_5end
chr3	100428165	100428186	CAGE_peak_6_at_TFG_5end
chr3	100428188	100428213	CAGE_peak_4_at_TFG_5end
chr3	100428249	100428260	CAGE_peak_8_at_TFG_5end
chr3	100428268	100428287	CAGE_peak_5_at_TFG_5end
chr3	100428317	100428471	CAGE_peak_1_at_TFG_5end
chr3	100428487	100428506	CAGE_peak_2_at_TFG_5end
chr3	100428509	100428529	CAGE_peak_3_at_TFG_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I100608	100608852	100616052	1.47	[{'connected_gene': 'ADGRG7', 'score': 550.77}, {'connected_gene': 'TFG', 'score': 16.39}, {'connected_gene': 'ENSG00000252989', 'score': 11.27}, {'connected_gene': 'TOMM70', 'score': 5.81}, {'connected_gene': 'TMEM45A', 'score': 5.01}, {'connected_gene': 'LNP1', 'score': 4.8}, {'connected_gene': 'GC03M100588', 'score': 0.37}]
chr3	GH03I100309	100309248	100309631	0.22	[{'connected_gene': 'NIT2', 'score': 11.94}, {'connected_gene': 'TBC1D23', 'score': 11.91}, {'connected_gene': 'LNP1', 'score': 10.82}, {'connected_gene': 'TOMM70', 'score': 10.82}, {'connected_gene': 'TFG', 'score': 9.79}]
chr3	GH03I100518	100518537	100520035	0.46	[{'connected_gene': 'TMEM45A', 'score': 8.66}, {'connected_gene': 'TOMM70', 'score': 5.21}, {'connected_gene': 'TFG', 'score': 5.11}, {'connected_gene': 'GC03P100533', 'score': 0.39}]
chr3	GH03I100520	100520411	100523530	0.75	[{'connected_gene': 'TMEM45A', 'score': 16.61}, {'connected_gene': 'TFG', 'score': 5.17}, {'connected_gene': 'GC03P100533', 'score': 0.39}]
chr3	GH03I101683	101683221	101688387	2.37	[{'connected_gene': 'RPL24', 'score': 574.35}, {'connected_gene': 'LOC105374013', 'score': 550.77}, {'connected_gene': 'GC03P101686', 'score': 550.77}, {'connected_gene': 'ZBTB11-AS1', 'score': 42.56}, {'connected_gene': 'SENP7', 'score': 34.15}, {'connected_gene': 'RPS18P5', 'score': 26.94}, {'connected_gene': 'ZNF90P1', 'score': 19.03}, {'connected_gene': 'ZBTB11', 'score': 16.4}, {'connected_gene': 'TFG', 'score': 10.71}, {'connected_gene': 'PDCL3P4', 'score': 10.62}, {'connected_gene': 'NXPE3', 'score': 10.2}, {'connected_gene': 'PCNP', 'score': 2.81}, {'connected_gene': 'TRMT10C', 'score': 1.36}, {'connected_gene': 'NFKBIZ', 'score': 1.32}]
chr3	GH03I100399	100399390	100404289	2.07	[{'connected_gene': 'LNP1', 'score': 570.83}, {'connected_gene': 'TOMM70', 'score': 558.51}, {'connected_gene': 'PIR48705', 'score': 550.77}, {'connected_gene': 'TBC1D23', 'score': 11.06}, {'connected_gene': 'TFG', 'score': 9.84}, {'connected_gene': 'GC03P100464', 'score': 0.21}]
chr3	GH03I100316	100316657	100316846	0.67	[{'connected_gene': 'LNP1', 'score': 10.59}, {'connected_gene': 'TOMM70', 'score': 10.59}, {'connected_gene': 'TFG', 'score': 10.31}, {'connected_gene': 'TBC1D23', 'score': 7.37}, {'connected_gene': 'NIT2', 'score': 0.37}]
chr3	GH03I100639	100639888	100642774	1.21	[{'connected_gene': 'TFG', 'score': 15.53}, {'connected_gene': 'ADGRG7', 'score': 11.19}, {'connected_gene': 'TMEM45A', 'score': 5.61}, {'connected_gene': 'LNP1', 'score': 4.07}, {'connected_gene': 'ENSG00000252989', 'score': 0.77}, {'connected_gene': 'GC03M100588', 'score': 0.39}]
chr3	GH03I100599	100599715	100601560	0.76	[{'connected_gene': 'TFG', 'score': 18.31}, {'connected_gene': 'TMEM45A', 'score': 6.36}, {'connected_gene': 'ADGRG7', 'score': 0.44}, {'connected_gene': 'GC03P100589', 'score': 0.39}, {'connected_gene': 'GC03M100588', 'score': 0.31}]
chr3	GH03I100602	100602130	100604042	1.26	[{'connected_gene': 'TFG', 'score': 18.18}, {'connected_gene': 'TMEM45A', 'score': 6.6}, {'connected_gene': 'ADGRG7', 'score': 0.44}, {'connected_gene': 'GC03P100589', 'score': 0.39}, {'connected_gene': 'GC03M100588', 'score': 0.31}]
chr3	GH03I100634	100634595	100637404	1.29	[{'connected_gene': 'TFG', 'score': 7.61}, {'connected_gene': 'TMEM45A', 'score': 5.89}, {'connected_gene': 'LNP1', 'score': 4.29}, {'connected_gene': 'GC03M100588', 'score': 0.44}, {'connected_gene': 'ENSG00000252989', 'score': 0.39}, {'connected_gene': 'ADGRG7', 'score': 0.31}]
chr3	GH03I100763	100763611	100763939	0.22	[{'connected_gene': 'TFG', 'score': 11.04}, {'connected_gene': 'TMEM45A', 'score': 3.92}, {'connected_gene': 'GC03P100766', 'score': 0.77}, {'connected_gene': 'GC03P100743', 'score': 0.34}, {'connected_gene': 'ABI3BP', 'score': 0.07}]
chr3	GH03I100591	100591089	100592181	0.69	[{'connected_gene': 'TFG', 'score': 18.35}, {'connected_gene': 'LNP1', 'score': 10.96}, {'connected_gene': 'TOMM70', 'score': 10.96}, {'connected_gene': 'TMEM45A', 'score': 7.45}, {'connected_gene': 'GC03P100589', 'score': 0.77}, {'connected_gene': 'ADGRG7', 'score': 0.37}, {'connected_gene': 'GC03M100588', 'score': 0.28}]
chr3	GH03I100681	100681008	100683899	0.59	[{'connected_gene': 'TFG', 'score': 18.31}, {'connected_gene': 'ENSG00000252989', 'score': 11.58}, {'connected_gene': 'LNP1', 'score': 9.32}, {'connected_gene': 'TMEM45A', 'score': 4.58}, {'connected_gene': 'GMFBP1', 'score': 0.37}, {'connected_gene': 'ADGRG7', 'score': 0.19}]
chr3	GH03I100706	100706709	100706864	0.38	[{'connected_gene': 'TFG', 'score': 9.02}, {'connected_gene': 'LNP1', 'score': 8.21}, {'connected_gene': 'GMFBP1', 'score': 0.26}]
chr3	GH03I100707	100707367	100711329	2	[{'connected_gene': 'TFG', 'score': 560.28}, {'connected_gene': 'LNP1', 'score': 8.22}, {'connected_gene': 'GC03M100717', 'score': 0.39}]
chr3	GH03I100650	100650561	100651655	0.95	[{'connected_gene': 'TFG', 'score': 18.07}, {'connected_gene': 'ENSG00000252989', 'score': 0.77}, {'connected_gene': 'GMFBP1', 'score': 0.39}, {'connected_gene': 'ADGRG7', 'score': 0.26}]
chr3	GH03I101122	101122319	101123895	0.31	[{'connected_gene': 'TFG', 'score': 4.77}, {'connected_gene': 'ACTR3P3', 'score': 0.28}, {'connected_gene': 'GC03P101086', 'score': 0.28}]
chr3	GH03I100665	100665201	100665400	0.38	[{'connected_gene': 'GMFBP1', 'score': 550.77}, {'connected_gene': 'TFG', 'score': 12.03}, {'connected_gene': 'ADGRG7', 'score': 10.98}, {'connected_gene': 'ENSG00000252989', 'score': 0.37}]
chr3	GH03I101643	101643269	101645033	1.28	[{'connected_gene': 'ZBTB11-AS1', 'score': 24.26}, {'connected_gene': 'RPL24', 'score': 22.97}, {'connected_gene': 'NXPE3', 'score': 17.86}, {'connected_gene': 'SENP7', 'score': 17.15}, {'connected_gene': 'TFG', 'score': 12.43}, {'connected_gene': 'PDCL3P4', 'score': 6.06}, {'connected_gene': 'GC03P101648', 'score': 0.77}, {'connected_gene': 'PIR36650', 'score': 0.44}]
chr3	GH03I100628	100628957	100630628	0.96	[{'connected_gene': 'GC03M100588', 'score': 550.77}, {'connected_gene': 'TFG', 'score': 17.2}, {'connected_gene': 'ADGRG7', 'score': 13.22}, {'connected_gene': 'ENSG00000252989', 'score': 0.37}]
chr3	GH03I100696	100696437	100699565	0.71	[{'connected_gene': 'ENSG00000252989', 'score': 10.27}, {'connected_gene': 'TFG', 'score': 8.44}, {'connected_gene': 'LNP1', 'score': 8.31}, {'connected_gene': 'ADGRG7', 'score': 8.13}, {'connected_gene': 'GMFBP1', 'score': 0.29}]