PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000232905	[[40351174, 40351463], [40352383, 40352547], [40352960, 40353062], [40353460, 40353915]]	[[40351432, 40351463], [40352383, 40352547], [40352960, 40353062], [40353460, 40353505]]
ENST00000462088	[[40351212, 40351463], [40352383, 40353005]]	None
ENST00000488260	[[40351316, 40351463], [40352383, 40352547], [40352960, 40353286]]	None
ENST00000487151	[[40352118, 40352547], [40352960, 40353163]]	None
NM_005875	[[40351172, 40351463], [40352383, 40352547], [40352960, 40353062], [40353460, 40353915]]	[[40351432, 40351463], [40352383, 40352547], [40352960, 40353062], [40353460, 40353505]]

Promoter

Chrom	Start	End	Description
chr3	40351169	40351206	CAGE_peak_1_at_EIF1B_5end
chr3	40351210	40351226	CAGE_peak_4_at_EIF1B_5end
chr3	40351254	40351275	CAGE_peak_2_at_EIF1B_5end
chr3	40351285	40351300	CAGE_peak_3_at_EIF1B_5end
chr3	40352369	40352380	CAGE_peak_5_at_EIF1B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I040292	40292669	40292936	0.83	[{'connected_gene': 'ENTPD3-AS1', 'score': 16.02}, {'connected_gene': 'ENSG00000202517', 'score': 11.03}, {'connected_gene': 'EIF1B', 'score': 4.85}, {'connected_gene': 'EIF1B-AS1', 'score': 0.37}, {'connected_gene': 'GC03P040264', 'score': 0.31}]
chr3	GH03I040267	40267525	40268530	0.59	[{'connected_gene': 'ENTPD3-AS1', 'score': 18.1}, {'connected_gene': 'ENSG00000202517', 'score': 11.8}, {'connected_gene': 'GC03P040264', 'score': 0.77}, {'connected_gene': 'EIF1B', 'score': 0.26}, {'connected_gene': 'EIF1B-AS1', 'score': 0.26}]
chr3	GH03I040230	40230077	40230336	0.27	[{'connected_gene': 'ENTPD3-AS1', 'score': 11.54}, {'connected_gene': 'EIF1B', 'score': 9.88}, {'connected_gene': 'GC03P040238', 'score': 0.44}, {'connected_gene': 'RN7SL411P', 'score': 0.34}, {'connected_gene': 'EIF1B-AS1', 'score': 0.18}, {'connected_gene': 'MYRIP', 'score': 0.05}]
chr3	GH03I040207	40207851	40208282	0.45	[{'connected_gene': 'RN7SL411P', 'score': 550.77}, {'connected_gene': 'ENTPD3-AS1', 'score': 12.56}, {'connected_gene': 'ENSG00000202517', 'score': 11.49}, {'connected_gene': 'EIF1B', 'score': 5.66}, {'connected_gene': 'LOC105377645', 'score': 0.44}, {'connected_gene': 'EIF1B-AS1', 'score': 0.15}, {'connected_gene': 'MYRIP', 'score': 0.05}]
chr3	GH03I040208	40208461	40208540	0.24	[{'connected_gene': 'RN7SL411P', 'score': 550.77}, {'connected_gene': 'ENSG00000202517', 'score': 11.49}, {'connected_gene': 'EIF1B', 'score': 7.98}, {'connected_gene': 'LOC105377645', 'score': 0.44}, {'connected_gene': 'EIF1B-AS1', 'score': 0.15}, {'connected_gene': 'MYRIP', 'score': 0.05}]
chr3	GH03I040308	40308673	40311601	2.07	[{'connected_gene': 'EIF1B', 'score': 550.77}, {'connected_gene': 'EIF1B-AS1', 'score': 550.77}, {'connected_gene': 'SNORA62', 'score': 22.35}, {'connected_gene': 'ENTPD3-AS1', 'score': 18.66}, {'connected_gene': 'ZNF619', 'score': 10.69}, {'connected_gene': 'RPL14', 'score': 4.63}, {'connected_gene': 'PGAM1P3', 'score': 0.39}]
chr3	GH03I040306	40306700	40306824	0.24	[{'connected_gene': 'EIF1B', 'score': 0.77}, {'connected_gene': 'EIF1B-AS1', 'score': 0.77}, {'connected_gene': 'GC03P040264', 'score': 0.26}]
chr3	GH03I040298	40298955	40300908	1.47	[{'connected_gene': 'EIF1B', 'score': 11.45}, {'connected_gene': 'ENTPD3-AS1', 'score': 11.17}, {'connected_gene': 'EIF1B-AS1', 'score': 0.44}, {'connected_gene': 'GC03P040264', 'score': 0.28}]
chr3	GH03I040210	40210994	40211194	0.24	[{'connected_gene': 'EIF1B', 'score': 13.43}, {'connected_gene': 'ENTPD3-AS1', 'score': 12.71}, {'connected_gene': 'ENSG00000202517', 'score': 11.9}, {'connected_gene': 'RN7SL411P', 'score': 0.77}, {'connected_gene': 'GC03P040238', 'score': 0.31}, {'connected_gene': 'EIF1B-AS1', 'score': 0.15}, {'connected_gene': 'MYRIP', 'score': 0.05}]
chr3	GH03I040229	40229322	40229751	0.49	[{'connected_gene': 'EIF1B', 'score': 5.97}, {'connected_gene': 'GC03P040238', 'score': 0.44}, {'connected_gene': 'RN7SL411P', 'score': 0.34}, {'connected_gene': 'EIF1B-AS1', 'score': 0.18}, {'connected_gene': 'MYRIP', 'score': 0.05}]
chr3	GH03I040192	40192770	40192919	0.64	[{'connected_gene': 'EIF1B', 'score': 11.72}, {'connected_gene': 'ENSG00000202517', 'score': 11.42}, {'connected_gene': 'LOC105377645', 'score': 0.44}, {'connected_gene': 'EIF1B-AS1', 'score': 0.13}, {'connected_gene': 'GC03M040043', 'score': 0.12}, {'connected_gene': 'MYRIP', 'score': 0.05}]