PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000377102	[[80910110, 80911891], [80912867, 80913794]]	[[80910892, 80911840]]
ENST00000377104	[[80910110, 80911891], [80914756, 80915086]]	[[80910892, 80911840]]
ENST00000540649	[[80910892, 80911891], [80913992, 80914243]]	[[80910892, 80911840]]
NM_001318537	[[80910110, 80911891], [80912867, 80913794]]	[[80910892, 80911840]]
NM_001318538	[[80910110, 80911891], [80912973, 80913794]]	[[80910892, 80911840]]
NM_001318536	[[80910110, 80911891], [80913992, 80914243]]	[[80910892, 80911840]]
NM_005842	[[80910110, 80911891], [80914756, 80915250]]	[[80910892, 80911840]]

Promoter

Chrom	Start	End	Description
chr13	80911879	80911890	CAGE_peak_16_at_SPRY2_5end
chr13	80912979	80913003	CAGE_peak_9_at_SPRY2_5end
chr13	80913025	80913042	CAGE_peak_11_at_SPRY2_5end
chr13	80913188	80913206	CAGE_peak_12_at_SPRY2_5end
chr13	80914790	80914795	CAGE_peak_41_at_SPRY2_5end
chr13	80915059	80915080	CAGE_peak_6_at_SPRY2_5end
chr13	80915235	80915251	CAGE_peak_3_at_SPRY2_5end
chr13	80915252	80915274	CAGE_peak_1_at_SPRY2_5end
chr13	80915289	80915300	CAGE_peak_4_at_SPRY2_5end
chr13	80915409	80915418	CAGE_peak_5_at_SPRY2_5end
chr13	80915433	80915476	CAGE_peak_2_at_SPRY2_5end
chr13	80915582	80915589	CAGE_peak_15_at_SPRY2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I080334	80334726	80335800	0.83	[{'connected_gene': 'RNU6-61P', 'score': 10.86}, {'connected_gene': 'SPRY2', 'score': 0.44}, {'connected_gene': 'LOC101927238', 'score': 0.13}]
chr13	GH13I080399	80399026	80401324	0.83	[{'connected_gene': 'RNU6-61P', 'score': 11.42}, {'connected_gene': 'SPRY2', 'score': 10.94}, {'connected_gene': 'PIR34078', 'score': 0.77}, {'connected_gene': 'HNRNPA1P31', 'score': 0.08}]
chr13	GH13I080361	80361332	80362964	1.28	[{'connected_gene': 'SPRY2', 'score': 11.94}, {'connected_gene': 'RNU6-61P', 'score': 0.44}, {'connected_gene': 'LOC105370276', 'score': 0.44}]
chr13	GH13I080435	80435178	80438323	0.54	[{'connected_gene': 'SPRY2', 'score': 11.3}, {'connected_gene': 'RNU6-61P', 'score': 10.96}, {'connected_gene': 'LINC00377', 'score': 6.59}, {'connected_gene': 'PIR34078', 'score': 0.28}, {'connected_gene': 'HNRNPA1P31', 'score': 0.09}]
chr13	GH13I080373	80373742	80375498	0.31	[{'connected_gene': 'SPRY2', 'score': 11.2}, {'connected_gene': 'RNU6-61P', 'score': 0.44}, {'connected_gene': 'PIR34078', 'score': 0.34}]
chr13	GH13I079775	79775595	79776949	0.91	[{'connected_gene': 'SPRY2', 'score': 11.44}, {'connected_gene': 'GC13M079776', 'score': 0.77}, {'connected_gene': 'LINC01068', 'score': 0.08}]
chr13	GH13I079798	79798632	79799763	0.52	[{'connected_gene': 'SPRY2', 'score': 9.6}, {'connected_gene': 'LINC01038', 'score': 0.44}, {'connected_gene': 'GC13P079780', 'score': 0.37}]
chr13	GH13I079781	79781896	79784152	0.82	[{'connected_gene': 'SPRY2', 'score': 11.09}, {'connected_gene': 'GC13P079780', 'score': 0.77}, {'connected_gene': 'LINC01038', 'score': 0.34}]
chr13	GH13I080194	80194686	80194835	0.31	[{'connected_gene': 'SPRY2', 'score': 11.04}, {'connected_gene': 'LOC101927238', 'score': 0.37}, {'connected_gene': 'LOC105370275', 'score': 0.31}]
chr13	GH13I080296	80296090	80297835	0.38	[{'connected_gene': 'SPRY2', 'score': 0.26}, {'connected_gene': 'LOC101927238', 'score': 0.17}]
chr13	GH13I080336	80336109	80343841	2.57	[{'connected_gene': 'SPRY2', 'score': 550.77}, {'connected_gene': 'LOC101927238', 'score': 0.13}]
chr13	GH13I080276	80276117	80277296	1.01	[{'connected_gene': 'SPRY2', 'score': 0.21}, {'connected_gene': 'LOC101927238', 'score': 0.2}]
chr13	GH13I080297	80297898	80298081	0.2	[{'connected_gene': 'SPRY2', 'score': 0.26}, {'connected_gene': 'LOC101927238', 'score': 0.17}]
chr13	GH13I080239	80239706	80239855	0.38	[{'connected_gene': 'SPRY2', 'score': 11.04}, {'connected_gene': 'LOC101927238', 'score': 0.31}]
chr13	GH13I080234	80234928	80236355	1.17	[{'connected_gene': 'SPRY2', 'score': 11.06}, {'connected_gene': 'LOC101927238', 'score': 0.34}]
chr13	GH13I080054	80054810	80055290	0.49	[{'connected_gene': 'SPRY2', 'score': 10.52}, {'connected_gene': 'LOC101927216', 'score': 0.34}, {'connected_gene': 'LINC01080', 'score': 0.26}]
chr13	GH13I080050	80050400	80050601	0.51	[{'connected_gene': 'SPRY2', 'score': 10.52}, {'connected_gene': 'LOC101927216', 'score': 0.34}, {'connected_gene': 'LINC01080', 'score': 0.28}]
chr13	GH13I079866	79866941	79870600	0.73	[{'connected_gene': 'SPRY2', 'score': 10.04}, {'connected_gene': 'LINC00382', 'score': 0.77}, {'connected_gene': 'LINC01038', 'score': 0.21}]
chr13	GH13I080019	80019770	80020606	0.43	[{'connected_gene': 'SPRY2', 'score': 10.48}, {'connected_gene': 'LINC01080', 'score': 0.44}, {'connected_gene': 'LOC101927216', 'score': 0.22}]
chr13	GH13I080021	80021570	80023779	0.38	[{'connected_gene': 'SPRY2', 'score': 10.48}, {'connected_gene': 'LINC01080', 'score': 0.39}, {'connected_gene': 'LOC101927216', 'score': 0.23}]
chr13	GH13I080630	80630209	80631701	0.46	[{'connected_gene': 'SPRY2', 'score': 5.13}, {'connected_gene': 'HNRNPA1P31', 'score': 0.39}, {'connected_gene': 'PWWP2AP1', 'score': 0.34}]
chr13	GH13I080453	80453747	80455075	0.74	[{'connected_gene': 'SPRY2', 'score': 11.14}, {'connected_gene': 'PIR34078', 'score': 0.22}, {'connected_gene': 'HNRNPA1P31', 'score': 0.1}]
chr13	GH13I080605	80605173	80606853	0.31	[{'connected_gene': 'SPRY2', 'score': 4.81}, {'connected_gene': 'HNRNPA1P31', 'score': 0.39}, {'connected_gene': 'PIR34078', 'score': 0.08}]
chr13	GH13I080599	80599546	80599695	0.31	[{'connected_gene': 'SPRY2', 'score': 10.44}, {'connected_gene': 'HNRNPA1P31', 'score': 0.34}, {'connected_gene': 'PIR34078', 'score': 0.08}]
chr13	GH13I080477	80477435	80478477	0.67	[{'connected_gene': 'SPRY2', 'score': 9.81}, {'connected_gene': 'PIR34078', 'score': 0.18}, {'connected_gene': 'HNRNPA1P31', 'score': 0.11}]
chr13	GH13I080684	80684227	80685231	0.52	[{'connected_gene': 'SPRY2', 'score': 9.54}, {'connected_gene': 'GC13P080701', 'score': 0.37}, {'connected_gene': 'PWWP2AP1', 'score': 0.31}]
chr13	GH13I080217	80217253	80218789	0.69	[{'connected_gene': 'LOC101927238', 'score': 0.44}, {'connected_gene': 'SPRY2', 'score': 0.13}]
chr13	GH13I080250	80250056	80250724	0.49	[{'connected_gene': 'LOC101927238', 'score': 0.28}, {'connected_gene': 'SPRY2', 'score': 0.16}]
chr13	GH13I080214	80214439	80215451	0.49	[{'connected_gene': 'LOC101927238', 'score': 0.77}, {'connected_gene': 'SPRY2', 'score': 0.13}]
chr13	GH13I080258	80258866	80259548	0.52	[{'connected_gene': 'LOC101927238', 'score': 0.25}, {'connected_gene': 'SPRY2', 'score': 0.18}]
chr13	GH13I080215	80215526	80215675	0.31	[{'connected_gene': 'LOC101927238', 'score': 0.77}, {'connected_gene': 'SPRY2', 'score': 0.13}]
chr13	GH13I079779	79779408	79780990	0.79	[{'connected_gene': 'GC13M079776', 'score': 550.77}, {'connected_gene': 'GC13P079780', 'score': 550.77}, {'connected_gene': 'SPRY2', 'score': 11.09}, {'connected_gene': 'RBM26-AS1', 'score': 4.98}]