PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000264255	[[99935444, 99936262], [99938417, 99938672], [99943997, 99944116], [99949484, 99949705], [99952701, 99952925]]	[[99936144, 99936262], [99938417, 99938672], [99943997, 99944116], [99949484, 99949673]]
ENST00000422767	[[99935970, 99936262], [99938417, 99938672], [99949484, 99949705]]	[[99938666, 99938672], [99949484, 99949673]]
ENST00000409434	[[99937996, 99938672], [99943997, 99944116], [99949484, 99949705], [99952701, 99952796]]	[[99938413, 99938672], [99943997, 99944116], [99949484, 99949673]]
ENST00000463385	[[99938023, 99938672], [99943997, 99944116], [99949446, 99949705], [99952701, 99952773]]	None
ENST00000438680	[[99938406, 99938672], [99943997, 99944116], [99949446, 99949705], [99952701, 99952796]]	[[99949448, 99949673]]
ENST00000434323	[[99938525, 99938672], [99939023, 99939122], [99943997, 99944116], [99949484, 99949705], [99952701, 99952848]]	[[99939061, 99939122], [99943997, 99944116], [99949484, 99949673]]
ENST00000409705	[[99938573, 99938672], [99943997, 99944116], [99949484, 99949705], [99954779, 99954854], [99957111, 99957165]]	[[99938573, 99938672], [99943997, 99944116], [99949484, 99949673]]
ENST00000465183	[[99949224, 99949705], [99952701, 99952819]]	None
ENST00000477337	[[99952799, 99953195], [99954779, 99954854], [99957111, 99957159]]	None
NM_005783	[[99935486, 99936262], [99938417, 99938672], [99943997, 99944116], [99949484, 99949705], [99952701, 99952860]]	[[99936144, 99936262], [99938417, 99938672], [99943997, 99944116], [99949484, 99949673]]

Promoter

Chrom	Start	End	Description
chr2	99952769	99952823	CAGE_peak_1_at_TXNDC9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I099323	99323688	99325091	0.31	[{'connected_gene': 'TSGA10', 'score': 25.72}, {'connected_gene': 'REV1', 'score': 15.67}, {'connected_gene': 'ENSG00000241962', 'score': 12.08}, {'connected_gene': 'MITD1', 'score': 11.49}, {'connected_gene': 'MRPL30', 'score': 11.49}, {'connected_gene': 'LIPT1', 'score': 10.01}, {'connected_gene': 'LYG1', 'score': 8.95}, {'connected_gene': 'PIR33754', 'score': 0.44}, {'connected_gene': 'EIF5B', 'score': 0.39}, {'connected_gene': 'TXNDC9', 'score': 0.37}]
chr2	GH02I099388	99388977	99390435	0.31	[{'connected_gene': 'TSGA10', 'score': 15.41}, {'connected_gene': 'LYG1', 'score': 13.78}, {'connected_gene': 'TXNDC9', 'score': 11.47}, {'connected_gene': 'EIF5B', 'score': 11.46}, {'connected_gene': 'REV1', 'score': 10.65}, {'connected_gene': 'ENSG00000273306', 'score': 0.37}]
chr2	GH02I099430	99430539	99431947	0.52	[{'connected_gene': 'TSGA10', 'score': 24.39}, {'connected_gene': 'TXNDC9', 'score': 11.23}, {'connected_gene': 'EIF5B', 'score': 11.23}, {'connected_gene': 'REV1', 'score': 11.05}, {'connected_gene': 'MRPL30', 'score': 9.8}, {'connected_gene': 'LIPT1', 'score': 9.79}, {'connected_gene': 'LYG1', 'score': 9.75}, {'connected_gene': 'ENSG00000273306', 'score': 0.31}]
chr2	GH02I099398	99398917	99399459	0.52	[{'connected_gene': 'REV1', 'score': 10.71}, {'connected_gene': 'ENSG00000273306', 'score': 0.44}, {'connected_gene': 'TXNDC9', 'score': 0.22}, {'connected_gene': 'EIF5B', 'score': 0.21}]
chr2	GH02I099334	99334998	99338930	2.11	[{'connected_gene': 'TXNDC9', 'score': 550.77}, {'connected_gene': 'EIF5B', 'score': 550.77}, {'connected_gene': 'LOC550644', 'score': 23.76}, {'connected_gene': 'TSGA10', 'score': 15.84}, {'connected_gene': 'REV1', 'score': 14.81}, {'connected_gene': 'ENSG00000273306', 'score': 12.29}, {'connected_gene': 'UNC50', 'score': 11.68}, {'connected_gene': 'MITD1', 'score': 10.31}, {'connected_gene': 'LYG1', 'score': 9.45}, {'connected_gene': 'PIR33754', 'score': 0.37}]
chr2	GH02I099403	99403567	99405066	0.8	[{'connected_gene': 'ENSG00000273306', 'score': 550.77}, {'connected_gene': 'LYG1', 'score': 12.99}, {'connected_gene': 'REV1', 'score': 11.03}, {'connected_gene': 'TXNDC9', 'score': 0.21}]
chr2	GH02I099400	99400935	99401231	0.63	[{'connected_gene': 'ENSG00000273306', 'score': 0.77}, {'connected_gene': 'TXNDC9', 'score': 0.21}, {'connected_gene': 'EIF5B', 'score': 0.21}, {'connected_gene': 'REV1', 'score': 0.17}]