PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369905	[[104238985, 104240722], [104240888, 104240929], [104241593, 104241655], [104241757, 104241932], [104242767, 104242860], [104243916, 104244133], [104245365, 104245490], [104247906, 104248032], [104248819, 104248895], [104250305, 104250370], [104262356, 104262468]]	[[104240619, 104240722], [104240888, 104240929], [104241593, 104241655], [104241757, 104241932], [104242767, 104242860], [104243916, 104244133], [104245365, 104245490], [104247906, 104248032], [104248819, 104248895], [104250305, 104250370], [104262356, 104262404]]
ENST00000470322	[[104238986, 104240722], [104240888, 104240929], [104241593, 104241655], [104241757, 104243437]]	None
ENST00000487599	[[104238993, 104240722], [104240888, 104240929], [104241757, 104241932], [104242767, 104242860], [104243916, 104244133], [104245365, 104245490], [104247906, 104248032], [104248819, 104248895], [104250305, 104250370], [104262356, 104262435]]	[[104240689, 104240722], [104240888, 104240929], [104241757, 104241932], [104242767, 104242860], [104243916, 104244133], [104245365, 104245490], [104247906, 104248032], [104248819, 104248895], [104250305, 104250370], [104262356, 104262404]]
ENST00000545684	[[104240330, 104240722], [104240888, 104240929], [104241593, 104241655], [104241757, 104241932], [104242767, 104242860], [104243916, 104244133], [104245365, 104245490], [104247906, 104248032], [104250305, 104250370], [104262356, 104262482]]	[[104240619, 104240722], [104240888, 104240929], [104241593, 104241655], [104241757, 104241932], [104242767, 104242860], [104243916, 104244133], [104245365, 104245490], [104247906, 104247999]]
ENST00000446605	[[104240350, 104240722], [104240888, 104240929], [104241593, 104241655], [104241757, 104241932], [104242767, 104242860], [104243916, 104244133], [104245365, 104245490], [104247906, 104248032], [104248819, 104248895], [104262356, 104262466]]	[[104240619, 104240722], [104240888, 104240929], [104241593, 104241655], [104241757, 104241932], [104242767, 104242860], [104243916, 104244133], [104245365, 104245490], [104247906, 104248032], [104248819, 104248867]]
ENST00000494549	[[104240551, 104240722], [104240888, 104240929], [104242767, 104242860], [104243916, 104244131]]	None
ENST00000481044	[[104242770, 104242860], [104243916, 104244133], [104245365, 104245490], [104247906, 104248032], [104248819, 104248895], [104262356, 104262411]]	None
ENST00000480947	[[104243830, 104244133], [104245365, 104245490], [104247906, 104247990]]	None
NM_005736	[[104238985, 104240722], [104240888, 104240929], [104241593, 104241655], [104241757, 104241932], [104242767, 104242860], [104243916, 104244133], [104245365, 104245490], [104247906, 104248032], [104248819, 104248895], [104250305, 104250370], [104262356, 104262512]]	[[104240619, 104240722], [104240888, 104240929], [104241593, 104241655], [104241757, 104241932], [104242767, 104242860], [104243916, 104244133], [104245365, 104245490], [104247906, 104248032], [104248819, 104248895], [104250305, 104250370], [104262356, 104262404]]

Promoter

Chrom	Start	End	Description
chr10	104243962	104243975	CAGE_peak_3_at_ACTR1A_5end
chr10	104262426	104262437	CAGE_peak_2_at_ACTR1A_5end
chr10	104262460	104262489	CAGE_peak_1_at_ACTR1A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I102484	102484304	102486305	0.2	[{'connected_gene': 'MFSD13A', 'score': 23.26}, {'connected_gene': 'C10orf95', 'score': 11.76}, {'connected_gene': 'RNU6-43P', 'score': 11.41}, {'connected_gene': 'NFKB2', 'score': 11.39}, {'connected_gene': 'MIR146B', 'score': 11.22}, {'connected_gene': 'CUEDC2', 'score': 11.21}, {'connected_gene': 'PSD', 'score': 11.1}, {'connected_gene': 'FBXL15', 'score': 11.09}, {'connected_gene': 'ELOVL3', 'score': 10.28}, {'connected_gene': 'ENSG00000273262', 'score': 0.77}, {'connected_gene': 'ACTR1A', 'score': 0.37}, {'connected_gene': 'GC10M102448', 'score': 0.28}, {'connected_gene': 'GC10M102383', 'score': 0.08}, {'connected_gene': 'GC10M102382', 'score': 0.08}]
chr10	GH10I102462	102462732	102464370	0.86	[{'connected_gene': 'MFSD13A', 'score': 40.71}, {'connected_gene': 'MIR146B', 'score': 11.54}, {'connected_gene': 'CUEDC2', 'score': 11.52}, {'connected_gene': 'FBXL15', 'score': 11.45}, {'connected_gene': 'PSD', 'score': 11.45}, {'connected_gene': 'SUFU', 'score': 11.02}, {'connected_gene': 'RNU6-43P', 'score': 10.87}, {'connected_gene': 'NFKB2', 'score': 10.63}, {'connected_gene': 'ELOVL3', 'score': 9.66}, {'connected_gene': 'GC10P102468', 'score': 0.77}, {'connected_gene': 'ACTR1A', 'score': 0.28}, {'connected_gene': 'GC10M102448', 'score': 0.22}, {'connected_gene': 'GC10M102383', 'score': 0.07}, {'connected_gene': 'GC10M102382', 'score': 0.07}]
chr10	GH10I102478	102478758	102479696	0.93	[{'connected_gene': 'MFSD13A', 'score': 34.93}, {'connected_gene': 'SUFU', 'score': 11.69}, {'connected_gene': 'MIR146B', 'score': 11.59}, {'connected_gene': 'CUEDC2', 'score': 11.58}, {'connected_gene': 'RNU6-43P', 'score': 11.27}, {'connected_gene': 'NFKB2', 'score': 11.2}, {'connected_gene': 'ELOVL3', 'score': 10.29}, {'connected_gene': 'ENSG00000273262', 'score': 0.77}, {'connected_gene': 'PIR54211', 'score': 0.44}, {'connected_gene': 'GC10P102474', 'score': 0.44}, {'connected_gene': 'ACTR1A', 'score': 0.34}, {'connected_gene': 'GC10M102448', 'score': 0.26}, {'connected_gene': 'GC10M102383', 'score': 0.08}, {'connected_gene': 'GC10M102382', 'score': 0.08}]
chr10	GH10I102625	102625402	102636039	1.59	[{'connected_gene': 'MFSD13A', 'score': 29.82}, {'connected_gene': 'SFXN2', 'score': 8.85}, {'connected_gene': 'ACTR1A', 'score': 5.31}, {'connected_gene': 'CUEDC2', 'score': 4.86}, {'connected_gene': 'GBF1', 'score': 1.58}, {'connected_gene': 'TRIM8', 'score': 0.39}, {'connected_gene': 'RNU6-43P', 'score': 0.28}, {'connected_gene': 'GC10M102383', 'score': 0.21}, {'connected_gene': 'GC10M102382', 'score': 0.21}, {'connected_gene': 'SUFU', 'score': 0.13}]
chr10	GH10I102595	102595093	102606248	1.65	[{'connected_gene': 'MFSD13A', 'score': 41.23}, {'connected_gene': 'SFXN2', 'score': 17.2}, {'connected_gene': 'ACTR1A', 'score': 12.81}, {'connected_gene': 'SUFU', 'score': 11.52}, {'connected_gene': 'C10orf95', 'score': 10.62}, {'connected_gene': 'PSD', 'score': 10.53}, {'connected_gene': 'FBXL15', 'score': 10.52}, {'connected_gene': 'CUEDC2', 'score': 10.52}, {'connected_gene': 'MIR146B', 'score': 10.51}, {'connected_gene': 'ARL3', 'score': 10.49}, {'connected_gene': 'WBP1L', 'score': 1.53}, {'connected_gene': 'RNU6-43P', 'score': 0.44}, {'connected_gene': 'TRIM8', 'score': 0.26}, {'connected_gene': 'GC10M102383', 'score': 0.16}, {'connected_gene': 'GC10M102382', 'score': 0.16}]
chr10	GH10I102567	102567405	102567907	0.2	[{'connected_gene': 'MFSD13A', 'score': 39.89}, {'connected_gene': 'RNU6-43P', 'score': 12.05}, {'connected_gene': 'SUFU', 'score': 11.92}, {'connected_gene': 'ACTR1A', 'score': 11.26}, {'connected_gene': 'C10orf95', 'score': 10.01}, {'connected_gene': 'RPL23AP58', 'score': 0.44}, {'connected_gene': 'GC10P102525', 'score': 0.26}, {'connected_gene': 'GC10M102383', 'score': 0.13}, {'connected_gene': 'GC10M102382', 'score': 0.13}]
chr10	GH10I102578	102578904	102581199	1.14	[{'connected_gene': 'MFSD13A', 'score': 39.31}, {'connected_gene': 'ACTR1A', 'score': 11.44}, {'connected_gene': 'SUFU', 'score': 11.44}, {'connected_gene': 'C10orf95', 'score': 10.76}, {'connected_gene': 'NFKB2', 'score': 10.62}, {'connected_gene': 'AS3MT', 'score': 6.9}, {'connected_gene': 'RPL23AP58', 'score': 0.44}, {'connected_gene': 'GC10P102592', 'score': 0.39}, {'connected_gene': 'GC10M102383', 'score': 0.14}, {'connected_gene': 'GC10M102382', 'score': 0.14}]
chr10	GH10I102542	102542431	102543513	0.52	[{'connected_gene': 'MFSD13A', 'score': 11.42}, {'connected_gene': 'ACTR1A', 'score': 4.99}, {'connected_gene': 'GC10P102525', 'score': 0.37}, {'connected_gene': 'RPL23AP58', 'score': 0.29}, {'connected_gene': 'SUFU', 'score': 0.26}, {'connected_gene': 'GC10M102383', 'score': 0.1}, {'connected_gene': 'GC10M102382', 'score': 0.1}]
chr10	GH10I102460	102460545	102462193	1.99	[{'connected_gene': 'MFSD13A', 'score': 566.79}, {'connected_gene': 'RPARP-AS1', 'score': 5.01}, {'connected_gene': 'C10orf95', 'score': 0.44}, {'connected_gene': 'ACTR1A', 'score': 0.26}, {'connected_gene': 'GC10M102448', 'score': 0.21}, {'connected_gene': 'GC10M102383', 'score': 0.07}, {'connected_gene': 'GC10M102382', 'score': 0.07}]
chr10	GH10I102342	102342256	102344577	0.99	[{'connected_gene': 'PITX3', 'score': 20.12}, {'connected_gene': 'GBF1', 'score': 11.66}, {'connected_gene': 'ELOVL3', 'score': 11.57}, {'connected_gene': 'NOLC1', 'score': 10.52}, {'connected_gene': 'FBXL15', 'score': 10.29}, {'connected_gene': 'PSD', 'score': 10.29}, {'connected_gene': 'C10orf95', 'score': 9.45}, {'connected_gene': 'MFSD13A', 'score': 9.44}, {'connected_gene': 'ACTR1A', 'score': 1.96}, {'connected_gene': 'NFKB2', 'score': 0.23}, {'connected_gene': 'GC10P102289', 'score': 0.23}]
chr10	GH10I102492	102492512	102493431	0.43	[{'connected_gene': 'SFXN2', 'score': 6.14}, {'connected_gene': 'ACTR1A', 'score': 0.44}, {'connected_gene': 'ENSG00000273262', 'score': 0.44}, {'connected_gene': 'GC10M102448', 'score': 0.31}, {'connected_gene': 'GC10M102383', 'score': 0.08}, {'connected_gene': 'GC10M102382', 'score': 0.08}]
chr10	GH10I102501	102501067	102505710	2.08	[{'connected_gene': 'ACTR1A', 'score': 550.77}, {'connected_gene': 'SUFU', 'score': 550.77}, {'connected_gene': 'MFSD13A', 'score': 45.58}, {'connected_gene': 'PDCD11', 'score': 30.74}, {'connected_gene': 'TAF5', 'score': 16.83}, {'connected_gene': 'PPRC1', 'score': 15.12}, {'connected_gene': 'PCGF6', 'score': 14.25}, {'connected_gene': 'RNU6-43P', 'score': 11.6}, {'connected_gene': 'C10orf95', 'score': 11.31}, {'connected_gene': 'FBXL15', 'score': 10.96}, {'connected_gene': 'PSD', 'score': 10.96}, {'connected_gene': 'POLL', 'score': 9.97}, {'connected_gene': 'GBF1', 'score': 9.76}, {'connected_gene': 'RPARP-AS1', 'score': 5.03}, {'connected_gene': 'GC10P102507', 'score': 0.77}, {'connected_gene': 'GC10M102448', 'score': 0.37}, {'connected_gene': 'GC10M102383', 'score': 0.08}, {'connected_gene': 'GC10M102382', 'score': 0.08}]
chr10	GH10I102467	102467548	102470200	0.87	[{'connected_gene': 'GC10P102468', 'score': 550.77}, {'connected_gene': 'MFSD13A', 'score': 39.59}, {'connected_gene': 'MIR146B', 'score': 12.06}, {'connected_gene': 'CUEDC2', 'score': 12.04}, {'connected_gene': 'SUFU', 'score': 11.7}, {'connected_gene': 'NFKB2', 'score': 11.63}, {'connected_gene': 'RNU6-43P', 'score': 11.53}, {'connected_gene': 'FBXL15', 'score': 11.09}, {'connected_gene': 'PSD', 'score': 11.09}, {'connected_gene': 'ELOVL3', 'score': 10.14}, {'connected_gene': 'RPARP-AS1', 'score': 5.24}, {'connected_gene': 'GC10P102474', 'score': 0.77}, {'connected_gene': 'PIR54211', 'score': 0.77}, {'connected_gene': 'ACTR1A', 'score': 0.29}, {'connected_gene': 'GC10M102448', 'score': 0.23}, {'connected_gene': 'GC10M102383', 'score': 0.07}, {'connected_gene': 'GC10M102382', 'score': 0.07}]
chr10	GH10I102522	102522773	102524182	0.46	[{'connected_gene': 'GC10M102448', 'score': 550.77}, {'connected_gene': 'MFSD13A', 'score': 45.14}, {'connected_gene': 'SUFU', 'score': 11.6}, {'connected_gene': 'ACTR1A', 'score': 11.57}, {'connected_gene': 'RNU6-43P', 'score': 11.46}, {'connected_gene': 'C10orf95', 'score': 10.68}, {'connected_gene': 'ELOVL3', 'score': 9.41}, {'connected_gene': 'GC10P102525', 'score': 0.77}, {'connected_gene': 'GC10M102383', 'score': 0.09}, {'connected_gene': 'GC10M102382', 'score': 0.09}]
chr10	GH10I102473	102473524	102473673	0.2	[{'connected_gene': 'PIR54211', 'score': 550.77}, {'connected_gene': 'GC10P102474', 'score': 550.77}, {'connected_gene': 'SUFU', 'score': 11.67}, {'connected_gene': 'MIR146B', 'score': 11.61}, {'connected_gene': 'CUEDC2', 'score': 11.59}, {'connected_gene': 'RNU6-43P', 'score': 11.26}, {'connected_gene': 'NFKB2', 'score': 11.22}, {'connected_gene': 'ELOVL3', 'score': 10.29}, {'connected_gene': 'GC10P102468', 'score': 0.44}, {'connected_gene': 'MFSD13A', 'score': 0.39}, {'connected_gene': 'ACTR1A', 'score': 0.31}, {'connected_gene': 'GC10M102448', 'score': 0.25}, {'connected_gene': 'GC10M102383', 'score': 0.07}, {'connected_gene': 'GC10M102382', 'score': 0.07}]