PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000418265	[[128806417, 128810189], [128813828, 128814012], [128848930, 128849031], [128849392, 128849479], [128852916, 128853038], [128853674, 128853797], [128859210, 128859328], [128864603, 128864716], [128875475, 128875518], [128875697, 128875763], [128877350, 128877402], [128877996, 128878019], [128879815, 128879879]]	[[128813867, 128814012], [128848930, 128849031], [128849392, 128849479], [128852916, 128853038], [128853674, 128853797], [128859210, 128859328], [128864603, 128864716], [128875475, 128875518], [128875697, 128875763], [128877350, 128877402], [128877996, 128878019], [128879815, 128879818]]
NM_001204890	[[128806411, 128810189], [128813828, 128814012], [128848930, 128849031], [128849392, 128849479], [128852916, 128853038], [128853674, 128853797], [128859210, 128859328], [128864603, 128864716], [128875475, 128875518], [128875697, 128875763], [128877350, 128877402], [128877996, 128878019], [128879815, 128880073]]	[[128813867, 128814012], [128848930, 128849031], [128849392, 128849479], [128852916, 128853038], [128853674, 128853797], [128859210, 128859328], [128864603, 128864716], [128875475, 128875518], [128875697, 128875763], [128877350, 128877402], [128877996, 128878019], [128879815, 128879818]]

Promoter

Chrom	Start	End	Description
chr3	128879875	128879937	CAGE_peak_1_at_ISY1-RAB43_5end,CAGE_peak_1_at_ISY1_5end
chr3	128879938	128879950	CAGE_peak_2_at_ISY1-RAB43_5end,CAGE_peak_2_at_ISY1_5end
chr3	128880125	128880155	CAGE_peak_3_at_ISY1-RAB43_5end,CAGE_peak_3_at_ISY1_5end
chr3	128880162	128880179	CAGE_peak_4_at_ISY1-RAB43_5end,CAGE_peak_4_at_ISY1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I129095	129095391	129098748	0.2	[{'connected_gene': 'RAB7A', 'score': 5.76}, {'connected_gene': 'RPL32P3', 'score': 5.04}, {'connected_gene': 'PIR33900', 'score': 0.37}, {'connected_gene': 'PIR45850', 'score': 0.31}, {'connected_gene': 'RAB43', 'score': 0.31}, {'connected_gene': 'GC03M129069', 'score': 0.31}, {'connected_gene': 'ISY1-RAB43', 'score': 0.21}]
chr3	GH03I129159	129159376	129163731	2.29	[{'connected_gene': 'ISY1', 'score': 562.13}, {'connected_gene': 'ISY1-RAB43', 'score': 550.77}, {'connected_gene': 'RPL32P3', 'score': 22.43}, {'connected_gene': 'ENSG00000244932', 'score': 17.31}, {'connected_gene': 'H1FX-AS1', 'score': 12.57}, {'connected_gene': 'CNBP', 'score': 10.4}, {'connected_gene': 'H1FX', 'score': 9.88}, {'connected_gene': 'ENSG00000273437', 'score': 0.77}, {'connected_gene': 'GC03M129158', 'score': 0.44}, {'connected_gene': 'GC03P129797', 'score': 0.37}]
chr3	GH03I129116	129116131	129124027	2.68	[{'connected_gene': 'RAB43', 'score': 562.97}, {'connected_gene': 'KIAA1257', 'score': 33.4}, {'connected_gene': 'ISY1', 'score': 14.01}, {'connected_gene': 'GP9', 'score': 13.55}, {'connected_gene': 'EFCC1', 'score': 10.74}, {'connected_gene': 'MBD4', 'score': 6.86}, {'connected_gene': 'ACAD9', 'score': 5.66}, {'connected_gene': 'RPL32P3', 'score': 4.89}, {'connected_gene': 'HMCES', 'score': 4.3}, {'connected_gene': 'CNBP', 'score': 2.8}, {'connected_gene': 'H1FX', 'score': 2.69}, {'connected_gene': 'RAB7A', 'score': 1.38}, {'connected_gene': 'ENSG00000273174', 'score': 0.77}, {'connected_gene': 'PIR33900', 'score': 0.77}, {'connected_gene': 'ISY1-RAB43', 'score': 0.26}]
chr3	GH03I129086	129086755	129088692	0.86	[{'connected_gene': 'GP9', 'score': 12.57}, {'connected_gene': 'ENSG00000187695', 'score': 12.09}, {'connected_gene': 'RAB43', 'score': 11.23}, {'connected_gene': 'RPL32P3', 'score': 4.7}, {'connected_gene': 'PIR45850', 'score': 0.34}, {'connected_gene': 'GC03M129069', 'score': 0.34}, {'connected_gene': 'PIR33900', 'score': 0.31}, {'connected_gene': 'ISY1-RAB43', 'score': 0.19}]
chr3	GH03I129103	129103300	129103531	0.42	[{'connected_gene': 'H1FOO', 'score': 15.02}, {'connected_gene': 'PIR33900', 'score': 0.39}, {'connected_gene': 'RAB43', 'score': 0.37}, {'connected_gene': 'PIR45850', 'score': 0.28}, {'connected_gene': 'GC03M129069', 'score': 0.28}, {'connected_gene': 'ISY1-RAB43', 'score': 0.22}]
chr3	GH03I129105	129105589	129107587	0.43	[{'connected_gene': 'RPL32P3', 'score': 4.67}, {'connected_gene': 'PIR33900', 'score': 0.39}, {'connected_gene': 'RAB43', 'score': 0.37}, {'connected_gene': 'PIR45850', 'score': 0.28}, {'connected_gene': 'GC03M129069', 'score': 0.28}, {'connected_gene': 'ISY1-RAB43', 'score': 0.23}]
chr3	GH03I129127	129127435	129128350	0.31	[{'connected_gene': 'PIR52955', 'score': 550.77}, {'connected_gene': 'PIR40814', 'score': 550.77}, {'connected_gene': 'ISY1', 'score': 12.35}, {'connected_gene': 'GP9', 'score': 10.96}, {'connected_gene': 'ENSG00000273174', 'score': 0.77}, {'connected_gene': 'ISY1-RAB43', 'score': 0.29}]
chr3	GH03I129112	129112400	129112601	0.92	[{'connected_gene': 'PIR33900', 'score': 0.77}, {'connected_gene': 'RAB43', 'score': 0.39}, {'connected_gene': 'PIR45850', 'score': 0.25}, {'connected_gene': 'GC03M129069', 'score': 0.25}, {'connected_gene': 'ISY1-RAB43', 'score': 0.25}]
chr3	GH03I129107	129107819	129108825	0.31	[{'connected_gene': 'PIR33900', 'score': 0.44}, {'connected_gene': 'RAB43', 'score': 0.39}, {'connected_gene': 'PIR45850', 'score': 0.26}, {'connected_gene': 'GC03M129069', 'score': 0.26}, {'connected_gene': 'ISY1-RAB43', 'score': 0.23}]