PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000604011	[[86732790, 86733072], [86734601, 86734716], [86737480, 86737602], [86756340, 86756520], [86769374, 86769435], [86847452, 86847592], [86915354, 86915448], [86948104, 86948245]]	[[86732926, 86733072], [86734601, 86734716], [86737480, 86737602], [86756340, 86756520], [86769374, 86769435], [86847452, 86847584]]
ENST00000440757	[[86737546, 86737602], [86756340, 86756520], [86769374, 86769435], [86847452, 86847592], [86849783, 86850151]]	[[86737546, 86737602], [86756340, 86756520], [86769374, 86769435], [86847452, 86847592], [86849783, 86850009]]
NM_001198954	[[86730552, 86733072], [86734601, 86734716], [86737480, 86737602], [86756340, 86756520], [86769374, 86769435], [86847452, 86847592], [86915354, 86915448], [86948104, 86948245]]	[[86732926, 86733072], [86734601, 86734716], [86737480, 86737602], [86756340, 86756520], [86769374, 86769435], [86847452, 86847584]]

Promoter

Chrom	Start	End	Description
chr2	86769939	86769942	CAGE_peak_17_at_RNF103-CHMP3_5end,CAGE_peak_19_at_CHMP3_5end
chr2	86789052	86789062	CAGE_peak_16_at_RNF103-CHMP3_5end,CAGE_peak_18_at_CHMP3_5end
chr2	86790420	86790427	CAGE_peak_6_at_CHMP3_5end,CAGE_peak_6_at_RNF103-CHMP3_5end
chr2	86790472	86790504	CAGE_peak_2_at_CHMP3_5end,CAGE_peak_2_at_RNF103-CHMP3_5end
chr2	86790505	86790579	CAGE_peak_1_at_CHMP3_5end,CAGE_peak_1_at_RNF103-CHMP3_5end
chr2	86790580	86790591	CAGE_peak_4_at_CHMP3_5end,CAGE_peak_4_at_RNF103-CHMP3_5end
chr2	86790593	86790614	CAGE_peak_3_at_CHMP3_5end,CAGE_peak_3_at_RNF103-CHMP3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I086648	86648656	86650165	0.79	[{'connected_gene': 'CD8A', 'score': 4.48}, {'connected_gene': 'RNF103', 'score': 0.31}, {'connected_gene': 'GC02P086686', 'score': 0.28}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.19}]
chr2	GH02I086728	86728814	86730101	0.2	[{'connected_gene': 'CD8A', 'score': 6.68}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.44}, {'connected_gene': 'RMND5A', 'score': 0.44}, {'connected_gene': 'GC02M086689', 'score': 0.44}]
chr2	GH02I086620	86620959	86624662	2.03	[{'connected_gene': 'RNF103', 'score': 550.77}, {'connected_gene': 'RNF103-CHMP3', 'score': 550.15}, {'connected_gene': 'CHMP3', 'score': 15.97}, {'connected_gene': 'RNU6-640P', 'score': 11.4}, {'connected_gene': 'MRPL35', 'score': 7.75}, {'connected_gene': 'POLR1A', 'score': 7.29}, {'connected_gene': 'PLGLB1', 'score': 6.38}, {'connected_gene': 'IMMT', 'score': 4.56}, {'connected_gene': 'GC02P086607', 'score': 0.37}, {'connected_gene': 'GC02P086603', 'score': 0.37}]
chr2	GH02I086628	86628046	86628476	0.78	[{'connected_gene': 'RNF103', 'score': 0.77}, {'connected_gene': 'GC02P086686', 'score': 0.22}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.16}]
chr2	GH02I086694	86694668	86696122	1.61	[{'connected_gene': 'SNORD94', 'score': 41.53}, {'connected_gene': 'LOC102724642', 'score': 34.49}, {'connected_gene': 'RNF103-CHMP3', 'score': 10.88}, {'connected_gene': 'RNF103', 'score': 10.76}, {'connected_gene': 'POLR1A', 'score': 10.21}, {'connected_gene': 'CHMP3', 'score': 9.95}, {'connected_gene': 'RNU6-640P', 'score': 9.92}, {'connected_gene': 'RMND5A', 'score': 6.78}, {'connected_gene': 'CD8A', 'score': 5.64}, {'connected_gene': 'ENSG00000231259', 'score': 5.56}, {'connected_gene': 'GC02P086686', 'score': 0.44}, {'connected_gene': 'GC02M086689', 'score': 0.26}]
chr2	GH02I086534	86534177	86534224	0.23	[{'connected_gene': 'REEP1', 'score': 2.07}, {'connected_gene': 'GC02M086516', 'score': 0.37}, {'connected_gene': 'RNU6-640P', 'score': 0.37}, {'connected_gene': 'LOC105374845', 'score': 0.31}, {'connected_gene': 'CHMP3', 'score': 0.31}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.09}]
chr2	GH02I086719	86719400	86721875	2.14	[{'connected_gene': 'RMND5A', 'score': 555.44}, {'connected_gene': 'RNF103-CHMP3', 'score': 550.77}, {'connected_gene': 'CD8A', 'score': 5.49}, {'connected_gene': 'ENSG00000231259', 'score': 5.3}, {'connected_gene': 'GC02M086689', 'score': 0.37}]
chr2	GH02I086462	86462927	86465856	0.31	[{'connected_gene': 'CHMP3', 'score': 22.71}, {'connected_gene': 'RNF103', 'score': 14.59}, {'connected_gene': 'RNU6-640P', 'score': 11.75}, {'connected_gene': 'KDM3A', 'score': 11.4}, {'connected_gene': 'RNF103-CHMP3', 'score': 10.24}, {'connected_gene': 'CD8A', 'score': 4.06}, {'connected_gene': 'GC02M086424', 'score': 0.77}, {'connected_gene': 'GC02M086437', 'score': 0.34}, {'connected_gene': 'GC02P086423', 'score': 0.26}]
chr2	GH02I086631	86631361	86633725	0.79	[{'connected_gene': 'CHMP3', 'score': 14.5}, {'connected_gene': 'RNU6-640P', 'score': 10.15}, {'connected_gene': 'REEP1', 'score': 6.8}, {'connected_gene': 'POLR1A', 'score': 4.03}, {'connected_gene': 'RNF103', 'score': 0.44}, {'connected_gene': 'GC02P086686', 'score': 0.23}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.17}]
chr2	GH02I086675	86675798	86675927	0.66	[{'connected_gene': 'CHMP3', 'score': 10.48}, {'connected_gene': 'RNU6-640P', 'score': 10.44}, {'connected_gene': 'LOC102724642', 'score': 5.04}, {'connected_gene': 'GC02P086686', 'score': 0.39}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.25}, {'connected_gene': 'RNF103', 'score': 0.23}]
chr2	GH02I086562	86562192	86564226	2.1	[{'connected_gene': 'CHMP3', 'score': 563.72}, {'connected_gene': 'LOC105374845', 'score': 562.49}, {'connected_gene': 'LOC102724642', 'score': 16.53}, {'connected_gene': 'LOC100420889', 'score': 15.84}, {'connected_gene': 'SNORD94', 'score': 14.71}, {'connected_gene': 'ENSG00000231259', 'score': 14.55}, {'connected_gene': 'C2orf68', 'score': 11.04}, {'connected_gene': 'USP39', 'score': 10.43}, {'connected_gene': 'MRPL35', 'score': 5.63}, {'connected_gene': 'REEP1', 'score': 4.41}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.1}]
chr2	GH02I086732	86732601	86733201	0.31	[{'connected_gene': 'POLR1A', 'score': 4.58}, {'connected_gene': 'GC02M086689', 'score': 0.77}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.39}, {'connected_gene': 'RMND5A', 'score': 0.39}]
chr2	GH02I086541	86541458	86541607	0.38	[{'connected_gene': 'LOC105374845', 'score': 0.34}, {'connected_gene': 'CHMP3', 'score': 0.34}, {'connected_gene': 'GC02M086516', 'score': 0.31}, {'connected_gene': 'RNU6-640P', 'score': 0.31}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.1}]
chr2	GH02I086566	86566148	86566652	0.54	[{'connected_gene': 'LOC105374845', 'score': 0.77}, {'connected_gene': 'CHMP3', 'score': 0.77}, {'connected_gene': 'GC02M086575', 'score': 0.37}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.1}]
chr2	GH02I086714	86714201	86715799	0.74	[{'connected_gene': 'LOC102724642', 'score': 19.04}, {'connected_gene': 'SNORD94', 'score': 15.7}, {'connected_gene': 'ENSG00000231259', 'score': 15.23}, {'connected_gene': 'LOC100420889', 'score': 13.38}, {'connected_gene': 'LOC730268', 'score': 11.64}, {'connected_gene': 'PTCD3', 'score': 10.8}, {'connected_gene': 'LOC105374845', 'score': 10.22}, {'connected_gene': 'RMND5A', 'score': 7.71}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.44}, {'connected_gene': 'GC02M086689', 'score': 0.34}, {'connected_gene': 'GC02P086686', 'score': 0.31}]
chr2	GH02I086747	86747437	86748912	0.68	[{'connected_gene': 'RNF103-CHMP3', 'score': 11.92}, {'connected_gene': 'RNF103', 'score': 11.74}, {'connected_gene': 'CHMP3', 'score': 11.06}, {'connected_gene': 'RNU6-640P', 'score': 11.04}, {'connected_gene': 'CD8A', 'score': 7.03}, {'connected_gene': 'RMND5A', 'score': 5.96}, {'connected_gene': 'IMMT', 'score': 4.68}, {'connected_gene': 'GC02M086689', 'score': 0.39}, {'connected_gene': 'LOC105374846', 'score': 0.25}]
chr2	GH02I086671	86671698	86671847	0.71	[{'connected_gene': 'RNF103-CHMP3', 'score': 11.9}, {'connected_gene': 'RNF103', 'score': 11.9}, {'connected_gene': 'CHMP3', 'score': 10.64}, {'connected_gene': 'RNU6-640P', 'score': 10.6}, {'connected_gene': 'GC02P086686', 'score': 0.39}]
chr2	GH02I086724	86724001	86724400	0.2	[{'connected_gene': 'RNF103-CHMP3', 'score': 0.77}, {'connected_gene': 'RMND5A', 'score': 0.77}, {'connected_gene': 'GC02M086689', 'score': 0.39}]
chr2	GH02I086727	86727469	86728604	0.2	[{'connected_gene': 'RNF103-CHMP3', 'score': 0.44}, {'connected_gene': 'RMND5A', 'score': 0.44}, {'connected_gene': 'GC02M086689', 'score': 0.44}]
chr2	GH02I086734	86734401	86735800	0.4	[{'connected_gene': 'GC02M086689', 'score': 550.77}, {'connected_gene': 'CD8A', 'score': 6.14}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.39}, {'connected_gene': 'RMND5A', 'score': 0.39}]
chr2	GH02I086583	86583733	86584976	1.02	[{'connected_gene': 'GC02M086575', 'score': 550.77}, {'connected_gene': 'RNF103', 'score': 12.0}, {'connected_gene': 'RNF103-CHMP3', 'score': 11.84}, {'connected_gene': 'LOC105374845', 'score': 0.34}, {'connected_gene': 'CHMP3', 'score': 0.34}]
chr2	GH02I086465	86465992	86471238	0.46	[{'connected_gene': 'GC02M086424', 'score': 550.77}, {'connected_gene': 'CHMP3', 'score': 21.88}, {'connected_gene': 'KDM3A', 'score': 11.38}, {'connected_gene': 'RNU6-640P', 'score': 11.36}, {'connected_gene': 'RNF103', 'score': 10.27}, {'connected_gene': 'RNF103-CHMP3', 'score': 10.24}, {'connected_gene': 'MRPL35', 'score': 5.78}, {'connected_gene': 'GC02P086487', 'score': 0.37}, {'connected_gene': 'GC02P086423', 'score': 0.25}]
chr2	GH02I086703	86703073	86706214	1.26	[{'connected_gene': 'ENSG00000272564', 'score': 4.0}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.37}, {'connected_gene': 'RMND5A', 'score': 0.37}, {'connected_gene': 'GC02P086686', 'score': 0.37}, {'connected_gene': 'GC02M086689', 'score': 0.29}]
chr2	GH02I086733	86733601	86734000	0.2	[{'connected_gene': 'GC02M086689', 'score': 550.77}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.39}, {'connected_gene': 'RMND5A', 'score': 0.39}]