PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000373337	[[35447135, 35447720], [35449367, 35449548], [35450798, 35450954]]	[[35447544, 35447720], [35449367, 35449548], [35450798, 35450906]]
NM_001195156	[[35447126, 35447720], [35449367, 35449548], [35450798, 35450948]]	[[35447544, 35447720], [35449367, 35449548], [35450798, 35450906]]

Promoter

Chrom	Start	End	Description
chr1	35450897	35450951	CAGE_peak_1_at_ZMYM6NB_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I035267	35267565	35270324	2.03	[{'connected_gene': 'ZMYM4', 'score': 550.77}, {'connected_gene': 'SFPQ', 'score': 22.6}, {'connected_gene': 'ENSG00000201542', 'score': 11.22}, {'connected_gene': 'ENSG00000201868', 'score': 11.13}, {'connected_gene': 'ZMYM6', 'score': 10.43}, {'connected_gene': 'LOC653160', 'score': 9.98}, {'connected_gene': 'TMEM35B', 'score': 9.98}, {'connected_gene': 'KIAA0319L', 'score': 4.09}, {'connected_gene': 'RN7SL503P', 'score': 0.34}]
chr1	GH01I035285	35285920	35286763	0.52	[{'connected_gene': 'KIAA0319L', 'score': 14.1}, {'connected_gene': 'ENSG00000201542', 'score': 12.28}, {'connected_gene': 'ENSG00000201868', 'score': 11.47}, {'connected_gene': 'SFPQ', 'score': 11.47}, {'connected_gene': 'ZMYM6', 'score': 10.38}, {'connected_gene': 'LOC653160', 'score': 9.8}, {'connected_gene': 'TMEM35B', 'score': 9.8}, {'connected_gene': 'NCDN', 'score': 9.55}, {'connected_gene': 'ENSG00000232335', 'score': 8.96}, {'connected_gene': 'CLSPN', 'score': 8.96}, {'connected_gene': 'RN7SL503P', 'score': 0.44}, {'connected_gene': 'ZMYM4', 'score': 0.37}]
chr1	GH01I035287	35287168	35289787	0.72	[{'connected_gene': 'KIAA0319L', 'score': 18.94}, {'connected_gene': 'ENSG00000201542', 'score': 12.28}, {'connected_gene': 'ENSG00000201868', 'score': 11.43}, {'connected_gene': 'SFPQ', 'score': 11.43}, {'connected_gene': 'LOC653160', 'score': 9.8}, {'connected_gene': 'TMEM35B', 'score': 9.8}, {'connected_gene': 'NCDN', 'score': 9.55}, {'connected_gene': 'RN7SL503P', 'score': 0.77}, {'connected_gene': 'ZMYM4', 'score': 0.37}]
chr1	GH01I035078	35078692	35081127	2.02	[{'connected_gene': 'ZMYM1', 'score': 557.88}, {'connected_gene': 'ZMYM6', 'score': 11.96}, {'connected_gene': 'TMEM35B', 'score': 10.92}, {'connected_gene': 'LOC653160', 'score': 10.92}, {'connected_gene': 'LOC105378645', 'score': 4.21}, {'connected_gene': 'GC01P035069', 'score': 0.39}, {'connected_gene': 'EFCAB14P1', 'score': 0.26}]
chr1	GH01I035162	35162015	35162883	0.92	[{'connected_gene': 'ZMYM1', 'score': 17.31}, {'connected_gene': 'ENSG00000201868', 'score': 11.6}, {'connected_gene': 'SFPQ', 'score': 11.6}, {'connected_gene': 'ZMYM6', 'score': 11.02}, {'connected_gene': 'ENSG00000201542', 'score': 10.99}, {'connected_gene': 'LOC653160', 'score': 10.36}, {'connected_gene': 'TMEM35B', 'score': 10.36}, {'connected_gene': 'LOC105378644', 'score': 0.37}]
chr1	GH01I034852	34852300	34853391	1.19	[{'connected_gene': 'ZMYM1', 'score': 18.32}, {'connected_gene': 'ENSG00000230163', 'score': 17.36}, {'connected_gene': 'SFPQ', 'score': 17.23}, {'connected_gene': 'LOC653160', 'score': 15.91}, {'connected_gene': 'ZMYM6', 'score': 14.47}, {'connected_gene': 'RPL5P4', 'score': 13.35}, {'connected_gene': 'TMEM35B', 'score': 11.0}, {'connected_gene': 'SMIM12', 'score': 6.94}, {'connected_gene': 'GC01P034859', 'score': 0.44}]
chr1	GH01I035800	35800001	35801200	1.09	[{'connected_gene': 'ZMYM1', 'score': 19.95}, {'connected_gene': 'EVA1B', 'score': 13.92}, {'connected_gene': 'RPL5P4', 'score': 12.55}, {'connected_gene': 'ENSG00000230163', 'score': 12.54}, {'connected_gene': 'TMEM35B', 'score': 11.99}, {'connected_gene': 'LOC653160', 'score': 11.79}, {'connected_gene': 'ZMYM6', 'score': 11.42}, {'connected_gene': 'THRAP3', 'score': 11.16}, {'connected_gene': 'SFPQ', 'score': 11.01}, {'connected_gene': 'COL8A2', 'score': 10.63}, {'connected_gene': 'AGO3', 'score': 6.39}, {'connected_gene': 'AGO4', 'score': 0.44}, {'connected_gene': 'CLSPN', 'score': 0.29}]
chr1	GH01I035189	35189220	35194198	2.29	[{'connected_gene': 'SFPQ', 'score': 625.0}, {'connected_gene': 'ZMYM1', 'score': 80.33}, {'connected_gene': 'LOC653160', 'score': 60.21}, {'connected_gene': 'ENSG00000230163', 'score': 50.81}, {'connected_gene': 'ZMYM6', 'score': 42.68}, {'connected_gene': 'LOC105378647', 'score': 38.82}, {'connected_gene': 'RPL5P4', 'score': 23.47}, {'connected_gene': 'AGO4', 'score': 21.52}, {'connected_gene': 'TMEM35B', 'score': 19.68}, {'connected_gene': 'COL8A2', 'score': 11.06}, {'connected_gene': 'TRAPPC3', 'score': 10.49}, {'connected_gene': 'AGO3', 'score': 9.91}, {'connected_gene': 'KIAA0319L', 'score': 9.21}, {'connected_gene': 'LOC105378644', 'score': 0.26}]
chr1	GH01I034865	34865188	34867851	1.37	[{'connected_gene': 'LOC653160', 'score': 25.56}, {'connected_gene': 'TMEM35B', 'score': 24.55}, {'connected_gene': 'ZMYM1', 'score': 17.74}, {'connected_gene': 'ENSG00000230163', 'score': 14.76}, {'connected_gene': 'ZMYM6', 'score': 12.65}, {'connected_gene': 'SFPQ', 'score': 12.24}, {'connected_gene': 'RPL5P4', 'score': 11.54}, {'connected_gene': 'GJB4', 'score': 10.52}, {'connected_gene': 'TFAP2E', 'score': 5.0}, {'connected_gene': 'SMIM12', 'score': 0.44}, {'connected_gene': 'GC01P034879', 'score': 0.39}, {'connected_gene': 'DLGAP3', 'score': 0.21}]
chr1	GH01I035178	35178437	35181068	0.84	[{'connected_gene': 'LOC653160', 'score': 21.95}, {'connected_gene': 'TMEM35B', 'score': 21.2}, {'connected_gene': 'ZMYM1', 'score': 14.59}, {'connected_gene': 'AGO4', 'score': 12.75}, {'connected_gene': 'SFPQ', 'score': 12.33}, {'connected_gene': 'RPL5P4', 'score': 11.92}, {'connected_gene': 'ENSG00000230163', 'score': 11.45}, {'connected_gene': 'COL8A2', 'score': 11.06}, {'connected_gene': 'ZMYM6', 'score': 11.01}, {'connected_gene': 'ENSG00000201542', 'score': 10.88}, {'connected_gene': 'LOC105378647', 'score': 10.31}, {'connected_gene': 'KIAA0319L', 'score': 8.55}, {'connected_gene': 'LOC105378644', 'score': 0.29}]
chr1	GH01I035717	35717554	35719600	2.28	[{'connected_gene': 'C1orf216', 'score': 563.12}, {'connected_gene': 'ZMYM1', 'score': 28.33}, {'connected_gene': 'ENSG00000230163', 'score': 27.8}, {'connected_gene': 'LOC653160', 'score': 27.2}, {'connected_gene': 'SFPQ', 'score': 26.17}, {'connected_gene': 'ZMYM6', 'score': 23.0}, {'connected_gene': 'LOC105378647', 'score': 20.48}, {'connected_gene': 'EVA1B', 'score': 19.45}, {'connected_gene': 'RPL5P4', 'score': 13.36}, {'connected_gene': 'THRAP3', 'score': 12.27}, {'connected_gene': 'TMEM35B', 'score': 10.91}, {'connected_gene': 'PIR49848', 'score': 0.77}]
chr1	GH01I034983	34983702	34986199	1.98	[{'connected_gene': 'TMEM35B', 'score': 550.77}, {'connected_gene': 'LOC653160', 'score': 550.77}, {'connected_gene': 'ZMYM6', 'score': 21.56}, {'connected_gene': 'SFPQ', 'score': 11.08}, {'connected_gene': 'ENSG00000271741', 'score': 0.25}, {'connected_gene': 'DLGAP3', 'score': 0.22}]
chr1	GH01I035046	35046713	35048229	0.74	[{'connected_gene': 'TMEM35B', 'score': 11.17}, {'connected_gene': 'LOC653160', 'score': 11.17}, {'connected_gene': 'RPL12P45', 'score': 0.44}, {'connected_gene': 'ZMYM6', 'score': 0.37}]
chr1	GH01I035856	35856431	35858407	0.82	[{'connected_gene': 'GC01P035856', 'score': 550.77}, {'connected_gene': 'SFPQ', 'score': 132.51}, {'connected_gene': 'ZMYM1', 'score': 131.06}, {'connected_gene': 'ZMYM6', 'score': 106.49}, {'connected_gene': 'ZMYM4', 'score': 101.3}, {'connected_gene': 'LOC653160', 'score': 80.87}, {'connected_gene': 'AGO3', 'score': 79.96}, {'connected_gene': 'RPL5P4', 'score': 50.87}, {'connected_gene': 'THRAP3', 'score': 41.78}, {'connected_gene': 'COL8A2', 'score': 38.42}, {'connected_gene': 'EVA1B', 'score': 30.4}, {'connected_gene': 'LOC105378647', 'score': 30.13}, {'connected_gene': 'TRAPPC3', 'score': 19.14}, {'connected_gene': 'AGO4', 'score': 13.52}, {'connected_gene': 'TMEM35B', 'score': 9.87}, {'connected_gene': 'AGO1', 'score': 0.39}]