PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000409978	[[39117020, 39117127], [39122917, 39122990], [39146503, 39146613], [39148514, 39148564], [39156047, 39156212], [39156849, 39156971], [39158249, 39158392], [39162915, 39162975], [39164475, 39164700], [39171041, 39171171], [39178129, 39178262], [39180302, 39180386], [39181513, 39181597], [39184039, 39184188], [39185174, 39185339], [39186981, 39187789], [39193146, 39193286], [39200854, 39202590]]	[[39146588, 39146613], [39148514, 39148564], [39156047, 39156212], [39156849, 39156971], [39158249, 39158392], [39162915, 39162975], [39164475, 39164700], [39171041, 39171171], [39178129, 39178262], [39180302, 39180386], [39181513, 39181597], [39184039, 39184188], [39185174, 39185339], [39186981, 39187789], [39193146, 39193286], [39200854, 39200984]]
ENST00000536934	[[39146503, 39146613], [39148514, 39148564], [39156047, 39156212], [39156849, 39156971], [39158249, 39158392], [39162915, 39162975], [39164475, 39164700], [39171041, 39171171], [39178129, 39178262], [39180302, 39180386], [39181513, 39181597], [39184039, 39184188], [39185174, 39185339], [39186981, 39187789], [39193146, 39193286], [39199010, 39199062]]	[[39146588, 39146613], [39148514, 39148564], [39156047, 39156212], [39156849, 39156971], [39158249, 39158392], [39162915, 39162975], [39164475, 39164700], [39171041, 39171171], [39178129, 39178262], [39180302, 39180386], [39181513, 39181597], [39184039, 39184188], [39185174, 39185339], [39186981, 39187789], [39193146, 39193286], [39199010, 39199062]]
ENST00000398800	[[39146503, 39146613], [39148514, 39148564], [39156047, 39156212], [39156849, 39156971], [39158249, 39158392], [39162915, 39162975], [39164475, 39164700], [39171041, 39171171], [39178129, 39178262], [39180302, 39180386], [39181513, 39181597], [39184039, 39184188], [39185174, 39185339], [39186981, 39187789], [39193146, 39193286], [39200854, 39202586]]	[[39146588, 39146613], [39148514, 39148564], [39156047, 39156212], [39156849, 39156971], [39158249, 39158392], [39162915, 39162975], [39164475, 39164700], [39171041, 39171171], [39178129, 39178262], [39180302, 39180386], [39181513, 39181597], [39184039, 39184188], [39185174, 39185339], [39186981, 39187789], [39193146, 39193286], [39200854, 39200984]]
ENST00000486958	[[39185050, 39185339], [39193146, 39193286], [39200854, 39201084]]	None
ENST00000411874	[[39187644, 39187780], [39193146, 39193286], [39199010, 39199085], [39200847, 39201010]]	[[39187644, 39187780], [39193146, 39193286], [39199010, 39199062]]
ENST00000433605	[[39187645, 39187780], [39193146, 39193286], [39199010, 39199085], [39200150, 39200394]]	[[39187645, 39187780], [39193146, 39193286], [39199010, 39199062]]
ENST00000430382	[[39187701, 39187780], [39193146, 39193286], [39196545, 39196782]]	None
ENST00000488692	[[39155920, 39156212], [39156849, 39156971], [39158249, 39158450]]	None
ENST00000483305	[[39185195, 39185339], [39186561, 39186695], [39186981, 39187212]]	None
NM_001145451	[[39146503, 39146613], [39148514, 39148564], [39156047, 39156212], [39156849, 39156971], [39158249, 39158392], [39162915, 39162975], [39164475, 39164700], [39171041, 39171171], [39178129, 39178262], [39180302, 39180386], [39181513, 39181597], [39184039, 39184188], [39185174, 39185339], [39186981, 39187789], [39193146, 39193286], [39200854, 39202590]]	[[39146588, 39146613], [39148514, 39148564], [39156047, 39156212], [39156849, 39156971], [39158249, 39158392], [39162915, 39162975], [39164475, 39164700], [39171041, 39171171], [39178129, 39178262], [39180302, 39180386], [39181513, 39181597], [39184039, 39184188], [39185174, 39185339], [39186981, 39187789], [39193146, 39193286], [39200854, 39200984]]

Promoter

Chrom	Start	End	Description
chr2	39116979	39116989	CAGE_peak_5_at_ARHGEF33_5end
chr2	39116996	39117003	CAGE_peak_7_at_ARHGEF33_5end
chr2	39117010	39117021	CAGE_peak_3_at_ARHGEF33_5end
chr2	39117073	39117091	CAGE_peak_6_at_ARHGEF33_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I038681	38681851	38683465	0.51	[{'connected_gene': 'HNRNPLL', 'score': 10.97}, {'connected_gene': 'ENSG00000235586', 'score': 10.96}, {'connected_gene': 'GALM', 'score': 7.75}, {'connected_gene': 'ARHGEF33', 'score': 4.52}, {'connected_gene': 'ENSG00000232518', 'score': 0.39}, {'connected_gene': 'SRSF7', 'score': 0.2}]
chr2	GH02I038907	38907132	38909218	0.86	[{'connected_gene': 'DHX57', 'score': 20.91}, {'connected_gene': 'RNU6-851P', 'score': 12.13}, {'connected_gene': 'MORN2', 'score': 11.59}, {'connected_gene': 'ENSG00000225284', 'score': 11.24}, {'connected_gene': 'GC02M038898', 'score': 0.44}, {'connected_gene': 'ARHGEF33', 'score': 0.37}, {'connected_gene': 'GC02P038937', 'score': 0.31}]
chr2	GH02I038945	38945240	38946260	0.89	[{'connected_gene': 'MORN2', 'score': 10.87}, {'connected_gene': 'DHX57', 'score': 10.87}, {'connected_gene': 'RN7SL96P', 'score': 0.44}, {'connected_gene': 'LOC105374471', 'score': 0.44}, {'connected_gene': 'ARHGEF33', 'score': 0.22}]
chr2	GH02I038908	38906559	38906743	0.2	[{'connected_gene': 'MORN2', 'score': 11.41}, {'connected_gene': 'DHX57', 'score': 11.41}, {'connected_gene': 'GC02M038898', 'score': 0.44}, {'connected_gene': 'ARHGEF33', 'score': 0.37}, {'connected_gene': 'GC02P038937', 'score': 0.29}]
chr2	GH02I038906	38906280	38906429	0.2	[{'connected_gene': 'MORN2', 'score': 11.41}, {'connected_gene': 'DHX57', 'score': 11.41}, {'connected_gene': 'GC02M038898', 'score': 0.44}, {'connected_gene': 'ARHGEF33', 'score': 0.37}, {'connected_gene': 'GC02P038937', 'score': 0.29}]
chr2	GH02I039215	39215850	39218688	1.32	[{'connected_gene': 'SOS1', 'score': 44.03}, {'connected_gene': 'SRSF7', 'score': 15.29}, {'connected_gene': 'THUMPD2', 'score': 13.81}, {'connected_gene': 'ARHGEF33', 'score': 13.67}, {'connected_gene': 'ENSG00000202309', 'score': 12.02}, {'connected_gene': 'ENSG00000252473', 'score': 10.57}, {'connected_gene': 'DHX57', 'score': 9.72}, {'connected_gene': 'MORN2', 'score': 9.72}, {'connected_gene': 'CDKL4', 'score': 0.31}, {'connected_gene': 'GC02M039185', 'score': 0.29}]
chr2	GH02I038749	38749199	38752720	2.34	[{'connected_gene': 'SRSF7', 'score': 626.52}, {'connected_gene': 'GEMIN6', 'score': 550.77}, {'connected_gene': 'SOS1', 'score': 22.63}, {'connected_gene': 'DHX57', 'score': 13.9}, {'connected_gene': 'ARHGEF33', 'score': 12.1}, {'connected_gene': 'GALM', 'score': 7.48}, {'connected_gene': 'ASS1P2', 'score': 6.64}, {'connected_gene': 'LOC728730', 'score': 4.33}, {'connected_gene': 'ENSG00000232518', 'score': 0.18}]
chr2	GH02I038946	38946916	38948001	1.05	[{'connected_gene': 'SRSF7', 'score': 13.36}, {'connected_gene': 'MORN2', 'score': 10.87}, {'connected_gene': 'DHX57', 'score': 10.87}, {'connected_gene': 'ENSG00000225284', 'score': 10.8}, {'connected_gene': 'LOC105374471', 'score': 0.44}, {'connected_gene': 'RN7SL96P', 'score': 0.39}, {'connected_gene': 'ARHGEF33', 'score': 0.22}]
chr2	GH02I038959	38959861	38961201	0.96	[{'connected_gene': 'LOC375196', 'score': 550.77}, {'connected_gene': 'DHX57', 'score': 21.8}, {'connected_gene': 'ASS1P2', 'score': 13.04}, {'connected_gene': 'MORN2', 'score': 10.94}, {'connected_gene': 'THUMPD2', 'score': 10.52}, {'connected_gene': 'SRSF7', 'score': 10.4}, {'connected_gene': 'SOS1', 'score': 4.65}, {'connected_gene': 'SOS1-IT1', 'score': 0.29}, {'connected_gene': 'ARHGEF33', 'score': 0.19}]
chr2	GH02I038719	38719914	38721963	1.11	[{'connected_gene': 'GALM', 'score': 5.9}, {'connected_gene': 'ARHGEF33', 'score': 5.3}, {'connected_gene': 'SRSF7', 'score': 0.29}, {'connected_gene': 'ENSG00000232518', 'score': 0.25}]
chr2	GH02I038943	38943449	38944580	0.38	[{'connected_gene': 'RN7SL96P', 'score': 0.44}, {'connected_gene': 'LOC105374471', 'score': 0.44}, {'connected_gene': 'ARHGEF33', 'score': 0.23}]
chr2	GH02I038238	38238956	38240123	0.72	[{'connected_gene': 'LOC102723739', 'score': 550.77}, {'connected_gene': 'SRSF7', 'score': 72.9}, {'connected_gene': 'SOS1', 'score': 41.79}, {'connected_gene': 'DHX57', 'score': 40.61}, {'connected_gene': 'ARHGEF33', 'score': 25.09}, {'connected_gene': 'ASS1P2', 'score': 21.68}, {'connected_gene': 'HNRNPLL', 'score': 11.19}, {'connected_gene': 'ENSG00000229160', 'score': 7.04}, {'connected_gene': 'ATL2', 'score': 4.96}, {'connected_gene': 'GC02P038231', 'score': 0.44}, {'connected_gene': 'GC02M038108', 'score': 0.07}]
chr2	GH02I038866	38866476	38867907	0.38	[{'connected_gene': 'ARHGEF33', 'score': 6.64}, {'connected_gene': 'ENSG00000225284', 'score': 0.44}, {'connected_gene': 'DHX57', 'score': 0.44}]
chr2	GH02I038661	38661471	38661629	0.22	[{'connected_gene': 'ARHGEF33', 'score': 3.03}, {'connected_gene': 'GALM', 'score': 0.77}, {'connected_gene': 'HNRNPLL', 'score': 0.22}]
chr2	GH02I038497	38497690	38498961	1.12	[{'connected_gene': 'ARHGEF33', 'score': 3.25}, {'connected_gene': 'GC02M038108', 'score': 0.44}, {'connected_gene': 'LOC101929596', 'score': 0.37}]
chr2	GH02I038852	38852147	38852356	0.27	[{'connected_gene': 'GC02P038853', 'score': 550.77}, {'connected_gene': 'MORN2', 'score': 11.68}, {'connected_gene': 'DHX57', 'score': 11.68}, {'connected_gene': 'ARHGEF33', 'score': 1.86}, {'connected_gene': 'SRSF7', 'score': 1.35}, {'connected_gene': 'LOC105374470', 'score': 0.37}]
chr2	GH02I038095	38095012	38099600	1.61	[{'connected_gene': 'ENSG00000272054', 'score': 20.44}, {'connected_gene': 'CYP1B1', 'score': 17.5}, {'connected_gene': 'CYP1B1-AS1', 'score': 16.68}, {'connected_gene': 'SRSF7', 'score': 15.28}, {'connected_gene': 'DHX57', 'score': 14.52}, {'connected_gene': 'ARHGEF33', 'score': 13.65}, {'connected_gene': 'RMDN2-AS1', 'score': 11.68}, {'connected_gene': 'HNRNPLL', 'score': 11.17}, {'connected_gene': 'CEBPZ', 'score': 10.23}, {'connected_gene': 'CDC42EP3', 'score': 2.42}]
chr2	GH02I038669	38669926	38671871	0.31	[{'connected_gene': 'ENSG00000232518', 'score': 550.77}, {'connected_gene': 'GALM', 'score': 17.09}, {'connected_gene': 'ARHGEF33', 'score': 4.05}]
chr2	GH02I039111	39111405	39111979	0.23	[{'connected_gene': 'GC02P039110', 'score': 550.77}, {'connected_gene': 'ARHGEF33', 'score': 4.69}, {'connected_gene': 'SOS1', 'score': 0.39}]