PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000307296	[[33839843, 33840429], [33853563, 33853618], [33855050, 33855120], [33863446, 33863574], [33866678, 33866832], [33867971, 33868072], [33870344, 33870461], [33877535, 33877758], [33879695, 33879819], [33883388, 33883566], [33885603, 33885715], [33886910, 33887080], [33893979, 33894228], [33895370, 33895505], [33896657, 33896752], [33905497, 33905621], [33906734, 33906922], [33907842, 33911194]]	[[33840220, 33840429], [33853563, 33853618], [33855050, 33855120], [33863446, 33863574], [33866678, 33866832], [33867971, 33868072], [33870344, 33870461], [33877535, 33877758], [33879695, 33879819], [33883388, 33883566], [33885603, 33885715], [33886910, 33887080], [33893979, 33894228], [33895370, 33895505], [33896657, 33896752], [33905497, 33905621], [33906734, 33906922], [33907842, 33908017]]
ENST00000457054	[[33840065, 33840429], [33853563, 33853618], [33855050, 33855120], [33863446, 33863574], [33866678, 33866832], [33867971, 33868072], [33870329, 33870461], [33877535, 33877758], [33879695, 33879819], [33883388, 33883566], [33885603, 33885715], [33886910, 33887080], [33893979, 33894228], [33895370, 33895505], [33896657, 33896752], [33905497, 33905621], [33906734, 33906922], [33907842, 33911194]]	[[33840220, 33840429], [33853563, 33853618], [33855050, 33855120], [33863446, 33863574], [33866678, 33866832], [33867971, 33868072], [33870329, 33870461], [33877535, 33877758], [33879695, 33879819], [33883388, 33883566], [33885603, 33885715], [33886910, 33887080], [33893979, 33894228], [33895370, 33895505], [33896657, 33896752], [33905497, 33905621], [33906734, 33906922], [33907842, 33908017]]
ENST00000435909	[[33840102, 33840429], [33855050, 33855120], [33863446, 33863574], [33866678, 33866740]]	[[33840220, 33840429], [33855050, 33855060]]
ENST00000430877	[[33840112, 33840429], [33852588, 33852683], [33853563, 33853618], [33855050, 33855120], [33863446, 33863491]]	[[33840220, 33840429], [33852588, 33852616]]
ENST00000413073	[[33840114, 33840429], [33853563, 33853618], [33863526, 33863574], [33866678, 33866826]]	[[33840220, 33840429], [33853563, 33853618], [33863526, 33863574], [33866678, 33866826]]
ENST00000477798	[[33840121, 33840429], [33853563, 33853618], [33855050, 33855120], [33866678, 33866832]]	None
ENST00000498147	[[33840431, 33841030], [33853563, 33853618], [33855050, 33855120], [33863446, 33863524]]	None
ENST00000484478	[[33852554, 33852683], [33853563, 33853618], [33855050, 33855120], [33863446, 33863574], [33866678, 33866832], [33867971, 33868031]]	None
ENST00000494810	[[33854768, 33855120], [33863446, 33863574], [33866678, 33866817]]	None
ENST00000459659	[[33863464, 33863574], [33866678, 33866832], [33867971, 33868369]]	None
ENST00000412887	[[33866732, 33866832], [33867971, 33868072], [33870344, 33870461], [33876745, 33876810], [33877535, 33877758], [33879695, 33879819], [33885603, 33885715]]	[[33866786, 33866832], [33867971, 33868072], [33870344, 33870461], [33876745, 33876769]]
ENST00000482561	[[33869071, 33869451], [33870344, 33870461], [33877535, 33877664]]	None
ENST00000487821	[[33869972, 33870461], [33877535, 33877758], [33879695, 33879733]]	None
ENST00000465122	[[33885582, 33885715], [33886910, 33887080], [33893979, 33894228], [33895370, 33895505], [33896657, 33896752], [33905497, 33905609]]	None
ENST00000495235	[[33894099, 33894228], [33895370, 33895505], [33896657, 33896821]]	None
ENST00000489869	[[33896109, 33896752], [33905497, 33905621], [33906734, 33906809]]	None
ENST00000473593	[[33905387, 33905621], [33906734, 33906922], [33907842, 33907960]]	None
NM_001256192	[[33840062, 33840429], [33853563, 33853618], [33855050, 33855120], [33863446, 33863574], [33866678, 33866832], [33867971, 33868756]]	[[33840220, 33840429], [33853563, 33853618], [33855050, 33855120], [33863446, 33863574], [33866678, 33866832], [33867971, 33868171]]
NM_013374	[[33840062, 33840429], [33853563, 33853618], [33855050, 33855120], [33863446, 33863574], [33866678, 33866832], [33867971, 33868072], [33870344, 33870461], [33877535, 33877758], [33879695, 33879819], [33883388, 33883566], [33885603, 33885715], [33886910, 33887080], [33893979, 33894228], [33895370, 33895505], [33896657, 33896752], [33905497, 33905621], [33906734, 33906922], [33907842, 33911199]]	[[33840220, 33840429], [33853563, 33853618], [33855050, 33855120], [33863446, 33863574], [33866678, 33866832], [33867971, 33868072], [33870344, 33870461], [33877535, 33877758], [33879695, 33879819], [33883388, 33883566], [33885603, 33885715], [33886910, 33887080], [33893979, 33894228], [33895370, 33895505], [33896657, 33896752], [33905497, 33905621], [33906734, 33906922], [33907842, 33908017]]
NM_001162429	[[33840062, 33840429], [33853563, 33853618], [33855050, 33855120], [33863446, 33863574], [33866678, 33866832], [33867971, 33868072], [33870329, 33870461], [33877535, 33877758], [33879695, 33879819], [33883388, 33883566], [33885603, 33885715], [33886910, 33887080], [33893979, 33894228], [33895370, 33895505], [33896657, 33896752], [33905497, 33905621], [33906734, 33906922], [33907842, 33911199]]	[[33840220, 33840429], [33853563, 33853618], [33855050, 33855120], [33863446, 33863574], [33866678, 33866832], [33867971, 33868072], [33870329, 33870461], [33877535, 33877758], [33879695, 33879819], [33883388, 33883566], [33885603, 33885715], [33886910, 33887080], [33893979, 33894228], [33895370, 33895505], [33896657, 33896752], [33905497, 33905621], [33906734, 33906922], [33907842, 33908017]]

Promoter

Chrom	Start	End	Description
chr3	33840050	33840177	CAGE_peak_1_at_PDCD6IP_5end
chr3	33852404	33852408	CAGE_peak_15_at_PDCD6IP_5end
chr3	33893947	33893950	CAGE_peak_5_at_PDCD6IP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I033437	33437191	33442682	2.31	[{'connected_gene': 'UBP1', 'score': 578.92}, {'connected_gene': 'PIR40256', 'score': 550.77}, {'connected_gene': 'CNOT10', 'score': 69.7}, {'connected_gene': 'PDCD6IP', 'score': 44.86}, {'connected_gene': 'FBXL2', 'score': 20.53}, {'connected_gene': 'GLB1', 'score': 20.05}, {'connected_gene': 'TMPPE', 'score': 19.35}, {'connected_gene': 'CMTM6', 'score': 9.75}, {'connected_gene': 'GC03M033417', 'score': 0.39}]
chr3	GH03I032832	32832968	32833621	0.96	[{'connected_gene': 'CNOT10', 'score': 53.96}, {'connected_gene': 'UBP1', 'score': 39.88}, {'connected_gene': 'PDCD6IP', 'score': 38.97}, {'connected_gene': 'FBXL2', 'score': 12.45}, {'connected_gene': 'TMPPE', 'score': 11.79}, {'connected_gene': 'GLB1', 'score': 10.3}, {'connected_gene': 'TRIM71', 'score': 0.37}, {'connected_gene': 'PIR32571', 'score': 0.26}, {'connected_gene': 'GC03M032797', 'score': 0.19}]
chr3	GH03I033787	33787001	33787799	1.01	[{'connected_gene': 'CLASP2', 'score': 11.09}, {'connected_gene': 'UBP1', 'score': 10.11}, {'connected_gene': 'PDCD6IP', 'score': 6.28}, {'connected_gene': 'ENSG00000271324', 'score': 0.44}, {'connected_gene': 'LOC105377023', 'score': 0.39}, {'connected_gene': 'SDAD1P3', 'score': 0.37}]
chr3	GH03I033746	33746401	33747000	0.65	[{'connected_gene': 'CLASP2', 'score': 19.0}, {'connected_gene': 'PDCD6IP', 'score': 9.4}, {'connected_gene': 'ENSG00000228112', 'score': 0.37}, {'connected_gene': 'SDAD1P3', 'score': 0.31}]
chr3	GH03I032847	32847331	32852665	0.87	[{'connected_gene': 'TRIM71', 'score': 12.52}, {'connected_gene': 'CNOT10', 'score': 11.11}, {'connected_gene': 'PDCD6IP', 'score': 10.46}, {'connected_gene': 'TMPPE', 'score': 9.99}, {'connected_gene': 'GLB1', 'score': 9.99}, {'connected_gene': 'PIR32571', 'score': 0.31}, {'connected_gene': 'GC03M032797', 'score': 0.23}]
chr3	GH03I033849	33849001	33849200	0.31	[{'connected_gene': 'LOC105377024', 'score': 0.31}, {'connected_gene': 'PDCD6IP', 'score': 0.23}, {'connected_gene': 'GC03M033793', 'score': 0.23}]
chr3	GH03I033113	33113167	33116246	2.06	[{'connected_gene': 'CRTAP', 'score': 564.86}, {'connected_gene': 'GC03P033114', 'score': 550.77}, {'connected_gene': 'CNOT10', 'score': 31.91}, {'connected_gene': 'PDCD6IP', 'score': 25.19}, {'connected_gene': 'GLB1', 'score': 21.05}, {'connected_gene': 'UBP1', 'score': 11.49}, {'connected_gene': 'PIR55934', 'score': 0.31}]
chr3	GH03I033895	33895269	33895418	0.76	[{'connected_gene': 'PDCD6IP', 'score': 21.78}, {'connected_gene': 'UBP1', 'score': 11.25}, {'connected_gene': 'LOC105377024', 'score': 0.37}, {'connected_gene': 'GC03M034126', 'score': 0.07}]
chr3	GH03I033807	33807201	33807800	0.66	[{'connected_gene': 'PDCD6IP', 'score': 24.27}, {'connected_gene': 'CLASP2', 'score': 10.24}, {'connected_gene': 'GC03M033793', 'score': 0.44}, {'connected_gene': 'LOC105377024', 'score': 0.19}]
chr3	GH03I033790	33790047	33792595	1.48	[{'connected_gene': 'PDCD6IP', 'score': 18.27}, {'connected_gene': 'CLASP2', 'score': 15.4}, {'connected_gene': 'ENSG00000271643', 'score': 6.49}, {'connected_gene': 'ENSG00000271324', 'score': 6.4}, {'connected_gene': 'LOC105377023', 'score': 0.44}, {'connected_gene': 'SDAD1P3', 'score': 0.37}]
chr3	GH03I033904	33904417	33905755	1.11	[{'connected_gene': 'PDCD6IP', 'score': 10.83}, {'connected_gene': 'LOC105377024', 'score': 0.31}, {'connected_gene': 'GC03M034126', 'score': 0.07}]
chr3	GH03I034010	34010092	34014064	1.22	[{'connected_gene': 'PDCD6IP', 'score': 4.38}, {'connected_gene': 'ENSG00000271324', 'score': 4.25}, {'connected_gene': 'GC03M034126', 'score': 0.13}, {'connected_gene': 'LOC105377024', 'score': 0.12}]
chr3	GH03I033883	33883402	33884200	0.73	[{'connected_gene': 'PDCD6IP', 'score': 8.93}, {'connected_gene': 'LOC105377024', 'score': 0.77}, {'connected_gene': 'GC03M034126', 'score': 0.07}]
chr3	GH03I033797	33797494	33801159	2.1	[{'connected_gene': 'PDCD6IP', 'score': 595.17}, {'connected_gene': 'ENSG00000271020', 'score': 550.77}, {'connected_gene': 'LOC105377023', 'score': 550.77}, {'connected_gene': 'GC03M033793', 'score': 550.77}, {'connected_gene': 'GLB1', 'score': 10.71}, {'connected_gene': 'TMPPE', 'score': 10.64}, {'connected_gene': 'CLASP2', 'score': 10.51}, {'connected_gene': 'ENSG00000271324', 'score': 7.75}, {'connected_gene': 'LOC105377024', 'score': 0.18}]
chr3	GH03I034264	34264496	34264991	0.25	[{'connected_gene': 'PDCD6IP', 'score': 2.03}, {'connected_gene': 'GC03M034221', 'score': 0.28}, {'connected_gene': 'GC03P034312', 'score': 0.25}, {'connected_gene': 'ENSG00000236452', 'score': 0.21}, {'connected_gene': 'LINC01811', 'score': 0.14}]
chr3	GH03I033795	33795908	33796166	0.57	[{'connected_gene': 'ENSG00000271020', 'score': 550.77}, {'connected_gene': 'ENSG00000271324', 'score': 550.77}, {'connected_gene': 'ENSG00000271643', 'score': 550.77}, {'connected_gene': 'PDCD6IP', 'score': 17.02}, {'connected_gene': 'CLASP2', 'score': 3.78}, {'connected_gene': 'GC03M033793', 'score': 0.77}, {'connected_gene': 'LOC105377023', 'score': 0.77}]