PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000312521	[[23986750, 23987085], [23996027, 23996294], [23997527, 23997616], [24001161, 24001306], [24003467, 24004096], [24006467, 24006653], [24009303, 24009514], [24018713, 24022109]]	[[23987069, 23987085], [23996027, 23996294], [23997527, 23997616], [24001161, 24001306], [24003467, 24004096], [24006467, 24006653], [24009303, 24009514], [24018713, 24018910]]
ENST00000383773	[[23986865, 23987085], [23996027, 23996294], [23997527, 23997616], [24001161, 24001306], [24003467, 24004096], [24004714, 24004821], [24006467, 24006653], [24009303, 24009514], [24018713, 24019988]]	[[23987069, 23987085], [23996027, 23996294], [23997527, 23997616], [24001161, 24001306], [24003467, 24004096], [24004714, 24004795]]
ENST00000492552	[[23987611, 23987744], [23996027, 23996294], [23997527, 23997616], [24001161, 24001306], [24003467, 24004096], [24006467, 24006653], [24009303, 24009514], [24018713, 24019034]]	None
ENST00000468700	[[23996116, 23996294], [23997527, 23997616], [24001161, 24001415], [24003467, 24003825]]	None
ENST00000472780	[[24006254, 24006653], [24009303, 24009504]]	None
NM_005126	[[23986750, 23987085], [23996027, 23996294], [23997527, 23997616], [24001161, 24001306], [24003467, 24004096], [24006467, 24006653], [24009303, 24009514], [24018713, 24022109]]	[[23987069, 23987085], [23996027, 23996294], [23997527, 23997616], [24001161, 24001306], [24003467, 24004096], [24006467, 24006653], [24009303, 24009514], [24018713, 24018910]]
NR_110524	[[23986750, 23987085], [23996027, 23996294], [23997527, 23997616], [24001161, 24001306], [24003467, 24004096], [24004714, 24004821], [24006467, 24006653], [24009303, 24009514], [24018713, 24022109]]	None
NM_001145425	[[23987611, 23987744], [23996027, 23996294], [23997527, 23997616], [24001161, 24001306], [24003467, 24004096], [24006467, 24006653], [24009303, 24009514], [24018713, 24022109]]	[[23996236, 23996294], [23997527, 23997616], [24001161, 24001306], [24003467, 24004096], [24006467, 24006653], [24009303, 24009514], [24018713, 24018910]]

Promoter

Chrom	Start	End	Description
chr3	23986748	23986761	CAGE_peak_3_at_NR1D2_5end
chr3	23986762	23986821	CAGE_peak_1_at_NR1D2_5end
chr3	23986824	23986848	CAGE_peak_2_at_NR1D2_5end
chr3	23986876	23986885	CAGE_peak_4_at_NR1D2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I024237	24237512	24239304	1.32	[{'connected_gene': 'NR1D2', 'score': 12.34}, {'connected_gene': 'RPL15', 'score': 9.75}, {'connected_gene': 'LOC101927854', 'score': 0.17}, {'connected_gene': 'GC03M024338', 'score': 0.15}, {'connected_gene': 'THRB', 'score': 0.07}]
chr3	GH03I023968	23968550	23968659	0.6	[{'connected_gene': 'NR1D2', 'score': 12.18}, {'connected_gene': 'NKIRAS1', 'score': 12.18}, {'connected_gene': 'RPL15', 'score': 11.46}, {'connected_gene': 'NPM1P23', 'score': 0.13}]
chr3	GH03I023999	23999200	23999401	0.78	[{'connected_gene': 'NR1D2', 'score': 11.23}, {'connected_gene': 'NKIRAS1', 'score': 11.23}, {'connected_gene': 'RPL15', 'score': 10.49}, {'connected_gene': 'NPM1P23', 'score': 0.15}]
chr3	GH03I023945	23944118	23944119	0.54	[{'connected_gene': 'NR1D2', 'score': 550.77}, {'connected_gene': 'NKIRAS1', 'score': 0.77}, {'connected_gene': 'RPL15', 'score': 0.31}]
chr3	GH03I023944	23944359	23948967	2.11	[{'connected_gene': 'NR1D2', 'score': 561.37}, {'connected_gene': 'NKIRAS1', 'score': 550.77}, {'connected_gene': 'NPM1P23', 'score': 0.1}]
chr3	GH03I023738	23738734	23742276	1.39	[{'connected_gene': 'UBE2E1', 'score': 14.89}, {'connected_gene': 'UBE2E1-AS1', 'score': 12.04}, {'connected_gene': 'NR1D2', 'score': 2.34}, {'connected_gene': 'GC03M023675', 'score': 0.23}]
chr3	GH03I023963	23963004	23964448	0.7	[{'connected_gene': 'RPL15', 'score': 11.47}, {'connected_gene': 'NR1D2', 'score': 0.37}, {'connected_gene': 'NKIRAS1', 'score': 0.37}, {'connected_gene': 'NPM1P23', 'score': 0.12}]
chr3	GH03I023952	23952750	23952899	0.65	[{'connected_gene': 'RPL15', 'score': 11.71}, {'connected_gene': 'NR1D2', 'score': 0.44}, {'connected_gene': 'NKIRAS1', 'score': 0.44}, {'connected_gene': 'NPM1P23', 'score': 0.11}]
chr3	GH03I023949	23949414	23950898	0.82	[{'connected_gene': 'RPL15', 'score': 11.73}, {'connected_gene': 'NR1D2', 'score': 0.77}, {'connected_gene': 'NKIRAS1', 'score': 0.77}, {'connected_gene': 'NPM1P23', 'score': 0.11}]
chr3	GH03I023958	23958027	23960257	1	[{'connected_gene': 'RPL15', 'score': 11.51}, {'connected_gene': 'NR1D2', 'score': 0.39}, {'connected_gene': 'NKIRAS1', 'score': 0.39}, {'connected_gene': 'NPM1P23', 'score': 0.12}]
chr3	GH03I023923	23923950	23924139	0.78	[{'connected_gene': 'RPL15', 'score': 0.44}, {'connected_gene': 'NR1D2', 'score': 0.34}, {'connected_gene': 'NKIRAS1', 'score': 0.34}]
chr3	GH03I023888	23888730	23888859	0.6	[{'connected_gene': 'RPL15', 'score': 13.4}, {'connected_gene': 'NKIRAS1', 'score': 13.31}, {'connected_gene': 'NR1D2', 'score': 11.03}, {'connected_gene': 'UBE2E1-AS1', 'score': 10.39}, {'connected_gene': 'UBE2E1', 'score': 10.39}, {'connected_gene': 'PIR33503', 'score': 0.77}, {'connected_gene': 'ARL4AP4', 'score': 0.44}]
chr3	GH03I023826	23826201	23826600	0.63	[{'connected_gene': 'RPL15', 'score': 11.02}, {'connected_gene': 'NKIRAS1', 'score': 10.99}, {'connected_gene': 'NR1D2', 'score': 10.55}, {'connected_gene': 'GC03P023841', 'score': 0.37}, {'connected_gene': 'UBE2E1-AS1', 'score': 0.37}, {'connected_gene': 'UBE2E1', 'score': 0.34}]
chr3	GH03I023825	23825201	23825600	0.43	[{'connected_gene': 'RPL15', 'score': 11.02}, {'connected_gene': 'NKIRAS1', 'score': 10.99}, {'connected_gene': 'NR1D2', 'score': 10.55}, {'connected_gene': 'GC03P023841', 'score': 0.37}, {'connected_gene': 'UBE2E1-AS1', 'score': 0.37}, {'connected_gene': 'UBE2E1', 'score': 0.37}]
chr3	GH03I023873	23873970	23875091	0.69	[{'connected_gene': 'RPL15', 'score': 11.54}, {'connected_gene': 'NKIRAS1', 'score': 11.47}, {'connected_gene': 'NR1D2', 'score': 11.17}, {'connected_gene': 'ARL4AP4', 'score': 0.77}, {'connected_gene': 'GC03M023860', 'score': 0.39}, {'connected_gene': 'UBE2E1', 'score': 0.2}]
chr3	GH03I023864	23864754	23866819	0.91	[{'connected_gene': 'RPL15', 'score': 11.8}, {'connected_gene': 'NKIRAS1', 'score': 11.74}, {'connected_gene': 'UBE2E1-AS1', 'score': 11.12}, {'connected_gene': 'UBE2E1', 'score': 11.12}, {'connected_gene': 'NR1D2', 'score': 11.06}, {'connected_gene': 'GC03M023860', 'score': 0.77}, {'connected_gene': 'ARL4AP4', 'score': 0.39}]
chr3	GH03I023858	23858816	23860473	0.43	[{'connected_gene': 'RPL15', 'score': 11.79}, {'connected_gene': 'NKIRAS1', 'score': 11.74}, {'connected_gene': 'UBE2E1-AS1', 'score': 11.24}, {'connected_gene': 'UBE2E1', 'score': 11.24}, {'connected_gene': 'NR1D2', 'score': 11.04}, {'connected_gene': 'GC03M023860', 'score': 0.77}, {'connected_gene': 'GC03P023854', 'score': 0.44}]
chr3	GH03I024160	24160559	24163340	0.56	[{'connected_gene': 'NKIRAS1', 'score': 9.61}, {'connected_gene': 'NR1D2', 'score': 9.51}, {'connected_gene': 'LOC101927854', 'score': 0.39}, {'connected_gene': 'GC03M024338', 'score': 0.1}, {'connected_gene': 'THRB', 'score': 0.06}]
chr3	GH03I023915	23915171	23919257	2.14	[{'connected_gene': 'NKIRAS1', 'score': 563.1}, {'connected_gene': 'RPL15', 'score': 550.77}, {'connected_gene': 'NR1D2', 'score': 13.1}]
chr3	GH03I023829	23829298	23830399	0.96	[{'connected_gene': 'UBE2E1-AS1', 'score': 12.33}, {'connected_gene': 'UBE2E1', 'score': 12.33}, {'connected_gene': 'NR1D2', 'score': 11.42}, {'connected_gene': 'NKIRAS1', 'score': 11.42}, {'connected_gene': 'RPL15', 'score': 11.16}, {'connected_gene': 'GC03P023841', 'score': 0.39}]
chr3	GH03I023856	23856286	23858273	0.96	[{'connected_gene': 'UBE2E1-AS1', 'score': 11.24}, {'connected_gene': 'UBE2E1', 'score': 11.24}, {'connected_gene': 'RPL15', 'score': 11.17}, {'connected_gene': 'NKIRAS1', 'score': 11.12}, {'connected_gene': 'NR1D2', 'score': 10.85}, {'connected_gene': 'GC03P023854', 'score': 0.77}, {'connected_gene': 'GC03M023860', 'score': 0.77}]
chr3	GH03I023805	23805357	23812256	2.05	[{'connected_gene': 'UBE2E1-AS1', 'score': 550.77}, {'connected_gene': 'UBE2E1', 'score': 550.77}, {'connected_gene': 'RPL15', 'score': 23.15}, {'connected_gene': 'NKIRAS1', 'score': 10.52}, {'connected_gene': 'NR1D2', 'score': 10.12}, {'connected_gene': 'GC03P023841', 'score': 0.29}]
chr3	GH03I023880	23880823	23881220	0.31	[{'connected_gene': 'ARL4AP4', 'score': 550.77}, {'connected_gene': 'RPL15', 'score': 11.76}, {'connected_gene': 'NKIRAS1', 'score': 11.69}, {'connected_gene': 'NR1D2', 'score': 11.19}, {'connected_gene': 'PIR33503', 'score': 0.39}, {'connected_gene': 'UBE2E1', 'score': 0.18}]
chr3	GH03I023876	23876732	23878291	0.84	[{'connected_gene': 'ARL4AP4', 'score': 550.77}, {'connected_gene': 'UBE2E1-AS1', 'score': 12.43}, {'connected_gene': 'UBE2E1', 'score': 12.43}, {'connected_gene': 'RPL15', 'score': 11.76}, {'connected_gene': 'NKIRAS1', 'score': 11.69}, {'connected_gene': 'NR1D2', 'score': 11.18}, {'connected_gene': 'GC03M023860', 'score': 0.37}]