PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000290079	[[139685806, 139685876], [139686162, 139686229], [139686398, 139686482], [139686702, 139686810], [139687270, 139687709]]	[[139685822, 139685876], [139686162, 139686229], [139686398, 139686482], [139686702, 139686810], [139687270, 139687284]]
ENST00000465017	[[139685819, 139685876], [139686077, 139686229], [139686398, 139686482], [139686702, 139686810], [139687270, 139687708]]	None
ENST00000483187	[[139685823, 139685876], [139686398, 139686482], [139686702, 139686810], [139687270, 139687708]]	None
ENST00000479737	[[139685830, 139685876], [139686229, 139686482], [139686702, 139686810], [139687270, 139687354]]	None
ENST00000484854	[[139685842, 139686229], [139686398, 139686482], [139686702, 139686798]]	None
ENST00000489739	[[139685855, 139685876], [139686162, 139686229], [139686398, 139686810], [139687270, 139687321]]	None
NM_032928	[[139685776, 139685876], [139686162, 139686229], [139686398, 139686482], [139686702, 139686810], [139687270, 139687769]]	[[139685822, 139685876], [139686162, 139686229], [139686398, 139686482], [139686702, 139686810], [139687270, 139687284]]

Promoter

Chrom	Start	End	Description
chr9	139685772	139685781	CAGE_peak_2_at_TMEM141_5end
chr9	139685782	139685832	CAGE_peak_1_at_TMEM141_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I136787	136787601	136801825	2.51	[{'connected_gene': 'TMEM141', 'score': 561.35}, {'connected_gene': 'CCDC183', 'score': 550.77}, {'connected_gene': 'DPH7', 'score': 30.0}, {'connected_gene': 'LCN8', 'score': 18.18}, {'connected_gene': 'ANAPC2', 'score': 15.3}, {'connected_gene': 'ABCA2', 'score': 14.83}, {'connected_gene': 'SNHG7', 'score': 12.17}, {'connected_gene': 'LCN10', 'score': 11.88}, {'connected_gene': 'EXD3', 'score': 11.43}, {'connected_gene': 'LCN12', 'score': 11.33}, {'connected_gene': 'PRR31', 'score': 11.32}, {'connected_gene': 'FBXW5', 'score': 10.78}, {'connected_gene': 'C8G', 'score': 10.78}, {'connected_gene': 'MAN1B1', 'score': 10.41}, {'connected_gene': 'SEC16A', 'score': 10.17}, {'connected_gene': 'QSOX2', 'score': 9.92}, {'connected_gene': 'SDCCAG3', 'score': 9.71}, {'connected_gene': 'ENSG00000273066', 'score': 0.77}, {'connected_gene': 'ENSG00000272896', 'score': 0.77}, {'connected_gene': 'ENSG00000272679', 'score': 0.44}]
chr9	GH09I136898	136898192	136900040	0.72	[{'connected_gene': 'TMEM141', 'score': 11.67}, {'connected_gene': 'PAXX', 'score': 7.39}, {'connected_gene': 'LCNL1', 'score': 5.96}, {'connected_gene': 'MIR4479', 'score': 0.39}, {'connected_gene': 'TRAF2', 'score': 0.37}, {'connected_gene': 'PIR43412', 'score': 0.34}]
chr9	GH09I136549	136549610	136554075	1.61	[{'connected_gene': 'INPP5E', 'score': 20.34}, {'connected_gene': 'SEC16A', 'score': 13.79}, {'connected_gene': 'C9orf163', 'score': 12.05}, {'connected_gene': 'TMEM203', 'score': 10.07}, {'connected_gene': 'NOTCH1', 'score': 9.64}, {'connected_gene': 'NALT1', 'score': 5.27}, {'connected_gene': 'SDCCAG3', 'score': 1.47}, {'connected_gene': 'TMEM141', 'score': 1.4}, {'connected_gene': 'MIR4674', 'score': 0.44}, {'connected_gene': 'LINC01451', 'score': 0.2}]
chr9	GH09I136769	136769088	136770726	0.9	[{'connected_gene': 'LCN15', 'score': 550.77}, {'connected_gene': 'LCN8', 'score': 19.29}, {'connected_gene': 'TMEM141', 'score': 5.88}]
chr9	GH09I136895	136895718	136897727	0.43	[{'connected_gene': 'FUT7', 'score': 11.86}, {'connected_gene': 'ABCA2', 'score': 11.86}, {'connected_gene': 'NPDC1', 'score': 11.85}, {'connected_gene': 'ENTPD2', 'score': 11.84}, {'connected_gene': 'TMEM141', 'score': 11.67}, {'connected_gene': 'PAXX', 'score': 7.41}, {'connected_gene': 'PHPT1', 'score': 6.39}, {'connected_gene': 'MIR4479', 'score': 0.44}, {'connected_gene': 'TRAF2', 'score': 0.39}, {'connected_gene': 'PIR43412', 'score': 0.31}]
chr9	GH09I136784	136784686	136786448	0.9	[{'connected_gene': 'LCN8', 'score': 18.35}, {'connected_gene': 'ABCA2', 'score': 14.93}, {'connected_gene': 'NDOR1', 'score': 12.38}, {'connected_gene': 'LCN10', 'score': 11.91}, {'connected_gene': 'CCDC183-AS1', 'score': 11.84}, {'connected_gene': 'RABL6', 'score': 11.84}, {'connected_gene': 'LCN12', 'score': 11.32}, {'connected_gene': 'PRR31', 'score': 11.31}, {'connected_gene': 'FBXW5', 'score': 10.78}, {'connected_gene': 'C8G', 'score': 10.78}, {'connected_gene': 'MAN1B1', 'score': 9.69}, {'connected_gene': 'TMEM141', 'score': 7.23}, {'connected_gene': 'ATP6V1G1P3', 'score': 0.44}]
chr9	GH09I136678	136678380	136680203	1.06	[{'connected_gene': 'AGPAT2', 'score': 15.65}, {'connected_gene': 'TMEM141', 'score': 6.21}, {'connected_gene': 'MIR126', 'score': 0.44}]
chr9	GH09I136884	136884710	136887839	2.23	[{'connected_gene': 'MIR4479', 'score': 550.77}, {'connected_gene': 'TRAF2', 'score': 550.77}, {'connected_gene': 'LOC105376326', 'score': 550.77}, {'connected_gene': 'EHMT1', 'score': 38.48}, {'connected_gene': 'SDCCAG3', 'score': 24.18}, {'connected_gene': 'ANAPC2', 'score': 22.04}, {'connected_gene': 'PHPT1', 'score': 21.75}, {'connected_gene': 'SNHG7', 'score': 16.35}, {'connected_gene': 'LOC651337', 'score': 15.58}, {'connected_gene': 'MAMDC4', 'score': 12.44}, {'connected_gene': 'AJM1', 'score': 12.42}, {'connected_gene': 'FBXW5', 'score': 11.85}, {'connected_gene': 'C8G', 'score': 11.85}, {'connected_gene': 'LCN12', 'score': 11.84}, {'connected_gene': 'TMEM141', 'score': 11.81}, {'connected_gene': 'PRR31', 'score': 11.74}, {'connected_gene': 'CCDC183-AS1', 'score': 11.55}, {'connected_gene': 'RABL6', 'score': 11.55}, {'connected_gene': 'CCDC183', 'score': 11.54}, {'connected_gene': 'ABCA2', 'score': 11.36}, {'connected_gene': 'C9orf139', 'score': 11.36}, {'connected_gene': 'EXD3', 'score': 10.7}, {'connected_gene': 'MAN1B1', 'score': 10.32}, {'connected_gene': 'DPP7', 'score': 10.31}, {'connected_gene': 'GRIN1', 'score': 10.31}, {'connected_gene': 'SSNA1', 'score': 10.29}, {'connected_gene': 'TPRN', 'score': 10.29}, {'connected_gene': 'DPH7', 'score': 9.84}, {'connected_gene': 'LCNL1', 'score': 5.9}]
chr9	GH09I136900	136900192	136904156	1.26	[{'connected_gene': 'TRAF2', 'score': 12.81}, {'connected_gene': 'TMEM141', 'score': 11.66}, {'connected_gene': 'PHPT1', 'score': 10.94}, {'connected_gene': 'MAN1B1', 'score': 10.78}, {'connected_gene': 'ANAPC2', 'score': 10.64}, {'connected_gene': 'LCN12', 'score': 8.09}, {'connected_gene': 'PAXX', 'score': 6.64}, {'connected_gene': 'SAPCD2', 'score': 4.88}, {'connected_gene': 'MIR4479', 'score': 0.37}, {'connected_gene': 'PIR43412', 'score': 0.34}]
chr9	GH09I136881	136881316	136884008	1.4	[{'connected_gene': 'TRAF2', 'score': 550.77}, {'connected_gene': 'PHPT1', 'score': 23.32}, {'connected_gene': 'MAMDC4', 'score': 12.46}, {'connected_gene': 'AJM1', 'score': 12.44}, {'connected_gene': 'TMEM141', 'score': 11.81}, {'connected_gene': 'LCN12', 'score': 11.77}, {'connected_gene': 'PRR31', 'score': 11.73}, {'connected_gene': 'FBXW5', 'score': 11.6}, {'connected_gene': 'C8G', 'score': 11.6}, {'connected_gene': 'RABL6', 'score': 11.39}, {'connected_gene': 'ABCA2', 'score': 11.36}, {'connected_gene': 'C9orf139', 'score': 11.36}, {'connected_gene': 'CCDC183', 'score': 11.36}, {'connected_gene': 'CCDC183-AS1', 'score': 10.91}, {'connected_gene': 'SSNA1', 'score': 10.29}, {'connected_gene': 'ANAPC2', 'score': 10.29}, {'connected_gene': 'TPRN', 'score': 10.29}, {'connected_gene': 'LOC105376326', 'score': 0.77}]