PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
SUMO2	0	KDM1A	2	pull down	Ouyang J (2009)	1
ELAVL1	0	CMTM6	0	affinity chromatography technology	Abdelmohsen K (2009)	1
DNM1L	3	SAE1	0	affinity chromatography technology	Malty RH (2017)	1
ZMYM2	5	RCOR1	0	affinity chromatography technology, pull down	Gocke CB (2008), Gocke CB (2008)	2
VIM	0	MTA1	3	affinity chromatography technology	Hein MY (2015)	1
ZBTB1	4	HSPA8	4	affinity chromatography technology	Kim H (2014)	1
BRCA1	7	TUBB	3	affinity chromatography technology, affinity chromatography technology	Lotti LV (2002), Ertych N (2016)	2
ELAVL1	0	MAPK6	1	affinity chromatography technology	Abdelmohsen K (2009)	1
USP11	3	SUMO2	0	enzymatic study	Hendriks IA (2015)	1
PML	7	DAXX	5	two hybrid, two hybrid, affinity chromatography technology, imaging technique, two hybrid, affinity chromatography technology, imaging technique, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, imaging technique, imaging technique, affinity chromatography technology, affinity chromatography technology, pull down, pull down, imaging technique	Ishov AM (1999), Li H (2000), Li H (2000), Li H (2000), Lehembre F (2001), Zhong S (2000), Cuchet-Lourenco D (2011), Chu Y (2011), Meinecke I (2007), Jang MS (2002), Chang CC (2011), Wethkamp N (2011), Ferguson BJ (2007), Delbarre E (2013), Delbarre E (2013), Sahin U (2014), Lin DY (2006), Lin DY (2006), Lin DY (2006), Lin DY (2006), Torii S (1999)	21
UBE2I	0	EP300	36	enzymatic study, affinity chromatography technology	Girdwood D (2003), Bian XL (2017)	2
CHD4	22	CHD3	19	affinity chromatography technology, affinity chromatography technology, biochemical	Xue Y (1998), Xue Y (1998), Havugimana PC (2012)	3
UBA2	0	SAE1	0	two hybrid, affinity chromatography technology, enzymatic study, pull down, pull down, biochemical, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Rual JF (2005), Ewing RM (2007), Gong L (1999), Desterro JM (1999), Okuma T (1999), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	10
BLM	2	CHAF1A	1	far western blotting, affinity chromatography technology, two hybrid	Jiao R (2004), Jiao R (2004), Jiao R (2004)	3
ENO1	3	TP53BP1	3	affinity chromatography technology	Castello A (2012)	1
SDHAF2	1	EEF1A1	0	two hybrid	Stelzl U (2005)	1
SUMO2	0	SMCHD1	9	pull down	Ouyang J (2009)	1
CARS	1	UBA2	0	genetic interference	Horlbeck MA (2018)	1
EP300	36	MRE11	3	affinity chromatography technology	Jung SY (2005)	1
UBC	7	TRIM26	1	affinity chromatography technology	Matsumoto M (2005)	1
RCOR1	0	HDAC1	4	biochemical, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Hakimi MA (2002), You A (2001), You A (2001), Gocke CB (2008), Battaglioli E (2002), Gu H (2005), Pflum MK (2001), Humphrey GW (2001), Humphrey GW (2001), Humphrey GW (2001), Cetinkaya C (2007), Bantscheff M (2011), Joshi P (2013), Hein MY (2015), Huttlin EL (2017)	15
SUMO2	0	MYB	3	pull down	Saether T (2011)	1
TRAF1	0	GATAD2B	15	two hybrid	Rolland T (2014)	1
MSH2	4	SUPT16H	4	biochemical	Havugimana PC (2012)	1
MAPK6	1	TMPO	0	affinity chromatography technology	Rodriguez J (2016)	1
MTA2	1	BRCC3	0	biochemical	Kristensen AR (2012)	1
MDC1	8	RAD50	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, unspecified method, pull down, affinity chromatography technology	Xu X (2003), Goldberg M (2003), Goldberg M (2003), Stewart GS (2003), Chapman JR (2008), Chapman JR (2008), Chapman JR (2008)	7
HSPA8	4	EP300	36	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Huttlin EL (2017), Du C (2017), Du C (2017)	3
TUBA1B	0	TUBB4B	6	biochemical	Havugimana PC (2012)	1
USP7	14	SUMO2	0	enzymatic study	Lecona E (2016)	1
TRIM63	0	SENP3	1	enzymatic study	Loch CM (2012)	1
MTA1	3	CHD3	19	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Yan C (2003), Khaleque MA (2008), Xue Y (1998), Wan C (2015)	4
PRKDC	12	TPR	5	biochemical	Havugimana PC (2012)	1
MTA2	1	BRCA1	7	affinity chromatography technology, affinity chromatography technology	Wang Y (2009), Hill SJ (2014)	2
VCP	6	MDN1	19	affinity chromatography technology	Yu CC (2013)	1
SUMO2	0	GATAD2B	15	pull down	Ouyang J (2009)	1
MDC1	8	ABRAXAS1	0	affinity chromatography technology	Woods NT (2012)	1
CSNK2B	5	SUPT16H	4	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
EP300	36	BRCA1	7	affinity chromatography technology, pull down, affinity chromatography technology, pull down, genetic interference, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Pao GM (2000), Pao GM (2000), Pao GM (2000), Pao GM (2000), Fan S (2002), Fan S (2002), Ma Y (2010), Subbaramaiah K (2011), Subbaramaiah K (2012)	9
SUMO2	0	ATRX	7	pull down	Ouyang J (2009)	1
WRN	6	PML	7	affinity chromatography technology	Liu J (2011)	1
NUMA1	10	RUVBL1	2	biochemical	Wan C (2015)	1
UBE2I	0	TRIM63	0	two hybrid	McElhinny AS (2002)	1
EP300	36	MDC1	8	affinity chromatography technology	Jung SY (2005)	1
ZBTB1	4	ANXA1	1	affinity chromatography technology	Kim H (2014)	1
KDM1A	2	RBBP7	1	affinity chromatography technology	Li Q (2011)	1
MAPK6	1	VIM	0	affinity chromatography technology	Rodriguez J (2016)	1
SUMO2	0	TP53BP1	3	pull down	Ouyang J (2009)	1
EWSR1	2	ZBTB1	4	two hybrid	Ravasi T (2010)	1
RPL3	0	RPL4	4	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
ZBTB1	4	RPL3	0	affinity chromatography technology	Kim H (2014)	1
KDM1A	2	MTA1	3	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Wang Y (2009), Wang Y (2009), Cui S (2011), Cui S (2011)	4
CHD3	19	ZHX1	1	two hybrid	Goehler H (2004)	1
USP11	3	UBC	7	enzymatic study, pull down, pull down	Faesen AC (2011), Zhang X (2017), Kwasna D (2018)	3
KDM1A	2	CHD3	19	affinity chromatography technology, affinity chromatography technology	Wang Y (2009), Li Q (2011)	2
BRCA1	7	RAD50	3	biochemical, biochemical, two hybrid, affinity chromatography technology, pull down, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang Y (2000), Chiba N (2001), Zhong Q (1999), Zhong Q (1999), Zhong Q (1999), Zhong Q (1999), Greenberg RA (2006), Chen L (2008), Hill SJ (2014), Acharya S (2014)	10
SOD1	0	TPR	5	affinity chromatography technology	Malty RH (2017)	1
XRCC5	5	TOP2A	2	affinity chromatography technology	Matheos D (2002)	1
DNM1L	3	TRIM28	1	affinity chromatography technology	Malty RH (2017)	1
USP28	3	MDC1	8	affinity chromatography technology	Zhang D (2006)	1
EP300	36	PELP1	3	affinity chromatography technology, affinity chromatography technology	Vadlamudi RK (2001), Vadlamudi RK (2001)	2
TRIM28	1	MYB	3	pull down, pull down, affinity chromatography technology	Nomura T (2004), Nomura T (2004), Nomura T (2004)	3
SSSCA1	0	SUMO2	0	biochemical	Havugimana PC (2012)	1
HDAC2	1	RCOR2	3	affinity chromatography technology, affinity chromatography technology	Bantscheff M (2011), Joshi P (2013)	2
USP25	0	UBC	7	enzymatic study, pull down, enzymatic study, pull down, pull down, pull down, enzymatic study, affinity chromatography technology, pull down, pull down, enzymatic study, pull down	Faesen AC (2011), Nathan JA (2013), Meulmeester E (2008), Meulmeester E (2008), Zhang X (2017), Yang Y (2017), Wrigley JD (2017), Kawaguchi K (2017), Kawaguchi K (2017), Kawaguchi K (2017), Kawaguchi K (2017), Kwasna D (2018)	12
HNRNPK	4	UBE2I	0	two hybrid, affinity chromatography technology	Rual JF (2005), Pelisch F (2012)	2
NOL9	1	IPO5	0	affinity chromatography technology	Huttlin EL (2017)	1
HSPA1A	0	HSPA8	4	biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012)	2
EP300	36	PIAS1	4	pull down, affinity chromatography technology	Ledsaak M (2016), Ledsaak M (2016)	2
PHF8	6	TRIM26	1	affinity chromatography technology	Hein MY (2015)	1
ATF7IP	5	PML	7	imaging technique	Sasai N (2013)	1
USP28	3	TP53BP1	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Zhang D (2006), Zhang D (2006), Zhang D (2006), Cuella-Martin R (2016)	5
ANXA1	1	XRCC6	3	two hybrid	Vinayagam A (2011)	1
SUMO2	0	HNRNPH1	3	pull down	Ouyang J (2009)	1
SUMO2	0	ZNF496	1	pull down	Ouyang J (2009)	1
SUMO2	0	NOP2	4	pull down	Ouyang J (2009)	1
SUMO2	0	AHNAK	15	pull down	Ouyang J (2009)	1
RNF168	0	DDX21	0	affinity chromatography technology	Guturi KK (2016)	1
MYB	3	PIAS1	4	two hybrid, pull down, pull down	Alm-Kristiansen AH (2011), Ledsaak M (2016), Ledsaak M (2016)	3
HDAC1	4	TOP2A	2	affinity chromatography technology, affinity chromatography technology, pull down, pull down, two hybrid	Tsai SC (2000), Johnson CA (2001), Johnson CA (2001), Johnson CA (2001), Johnson CA (2001)	5
SUMO2	0	SENP2	3	two hybrid, pull down	Rolland T (2014), Ouyang J (2009)	2
ALDOA	0	PIAS4	5	two hybrid	Wang J (2011)	1
BRCA1	7	BLM	2	biochemical, affinity chromatography technology, affinity chromatography technology	Wang Y (2000), Acharya S (2014), Ertych N (2016)	3
HDAC1	4	RCOR2	3	affinity chromatography technology, affinity chromatography technology	Joshi P (2013), Huttlin EL (2017)	2
EXOSC9	2	EXOSC10	1	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Hein MY (2015)	3
BLM	2	UBE2I	0	two hybrid, affinity chromatography technology	Eladad S (2005), Eladad S (2005)	2
MTA2	1	CHD4	22	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical	Yao YL (2003), Yao YL (2003), Zhang Y (1998), Wang Y (2009), Cui S (2011), Havugimana PC (2012), Quan J (2014), Wan C (2015)	8
ATXN7	0	SUMO2	0	pull down	Janer A (2010)	1
SEM1	0	HSPA8	4	affinity chromatography technology	Zhang Y (2014)	1
CSNK2B	5	BRCA1	7	pull down, two hybrid, pull down	OBrien KA (1999), OBrien KA (1999), OBrien KA (1999)	3
SP100	4	SUMO2	0	two hybrid, two hybrid, pull down	Wang J (2011), Hecker CM (2006), Hecker CM (2006)	3
SUMO2	0	TRIM26	1	pull down	Ouyang J (2009)	1
BRCA1	7	HSPA8	4	two hybrid, affinity chromatography technology	Yu X (1998), Ertych N (2016)	2
RNF4	1	PML	7	affinity chromatography technology, affinity chromatography technology, fluorescent resonance energy transfe, enzymatic study, fluorescent resonance energy transfe, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, protein complementation assay	Bruderer R (2011), Haekli M (2005), Percherancier Y (2009), Tatham MH (2008), Maroui MA (2012), Maroui MA (2012), Li YJ (2012), Kuo CY (2014), Kuo CY (2014), Weisshaar SR (2008), Sahin U (2014)	11
SUMO2	0	TNIP1	1	two hybrid	Wang J (2011)	1
BRCC3	0	SUPT16H	4	affinity chromatography technology	Sowa ME (2009)	1
BRCA1	7	EXOSC10	1	affinity chromatography technology	Ertych N (2016)	1
SOD1	0	ELAVL1	0	affinity chromatography technology	Malty RH (2017)	1
ELAVL1	0	EWSR1	2	affinity chromatography technology	Abdelmohsen K (2009)	1
ENO2	1	EEF1A1	0	biochemical	Wan C (2015)	1
TEX10	3	SENP3	1	biochemical	Wan C (2015)	1
SUMO2	0	ZHX1	1	two hybrid	Hecker CM (2006)	1
NUP153	1	SENP1	0	affinity chromatography technology	Hein MY (2015)	1
DDX3X	52	TPR	5	biochemical	Havugimana PC (2012)	1
EWSR1	2	RNF168	0	biochemical	Havugimana PC (2012)	1
BRCA1	7	EWSR1	2	affinity chromatography technology	Ertych N (2016)	1
CHD4	22	GATAD2B	15	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Rahman S (2011), Huttlin EL (2015), Huttlin EL (2017)	3
TRIM63	0	SUMO2	0	two hybrid, pull down	Dai KS (2001), Dai KS (2001)	2
HDAC1	4	MTA1	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Yao YL (2003), Yao YL (2003), Yao YL (2003), Mazumdar A (2001), Mazumdar A (2001), Yoo YG (2006), Liu XF (2004), Khaleque MA (2008), Terhune SS (2010), Xue Y (1998), Xue Y (1998), Cui S (2011), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Wan C (2015), Hein MY (2015), Huttlin EL (2017), Millard CJ (2016), Millard CJ (2016)	21
MAPK6	1	DCD	0	affinity chromatography technology	Rodriguez J (2016)	1
SUMO2	0	ZCCHC12	1	two hybrid	Hecker CM (2006)	1
PRKDC	12	WRN	6	unspecified method, affinity chromatography technology, enzymatic study	Kim ST (1999), Karmakar P (2002), Karmakar P (2002)	3
SUMO2	0	RPL3	0	pull down	Ouyang J (2009)	1
BLM	2	WRN	6	affinity chromatography technology, pull down	von Kobbe C (2002), von Kobbe C (2002)	2
UBE2I	0	SETX	7	two hybrid	Bandyopadhyay S (2010)	1
UBC	7	ABRAXAS1	0	affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Wang B (2009), Zhang X (2017)	3
BABAM2	2	BRCC3	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), Dong Y (2003), Dong Y (2003), Dong Y (2003), Sowa ME (2009), Sowa ME (2009), Wang B (2009), Wang B (2009), Shao G (2009), Cooper EM (2010), Hu X (2011), Hu X (2011), Patterson-Fortin J (2010), Patterson-Fortin J (2010), Feng L (2009), Feng L (2009), Feng L (2009)	17
EEF1A1	0	SUPT16H	4	biochemical	Havugimana PC (2012)	1
BRCA1	7	ANXA1	1	affinity chromatography technology	Ertych N (2016)	1
ZBED1	0	MTA2	1	affinity chromatography technology	Huttlin EL (2017)	1
LAS1L	3	IPO5	0	affinity chromatography technology, affinity chromatography technology	Castle CD (2012), Castle CD (2012)	2
TRIM63	0	SENP2	3	enzymatic study	Loch CM (2012)	1
DNM1L	3	CARS	1	biochemical	Kristensen AR (2012)	1
ZHX1	1	PIAS4	5	two hybrid	Goehler H (2004)	1
BRCA1	7	UBE2I	0	fluorescent resonance energy transfe, enzymatic study, affinity chromatography technology, affinity chromatography technology	Morris JR (2009), Morris JR (2009), Xu J (2009), Xu J (2009)	4
ENO1	3	CHD3	19	affinity chromatography technology	Castello A (2012)	1
DNM1L	3	DCD	0	affinity chromatography technology	Malty RH (2017)	1
UBC	7	CHD3	19	pull down	Nathan JA (2013)	1
UBC	7	VCP	6	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Zhong X (2006), Dai RM (2001), Bish RA (2007), Lim JJ (2016), Zhang X (2017)	6
ZBTB1	4	MTA2	1	affinity chromatography technology, affinity chromatography technology	Kim H (2014), Kim H (2014)	2
SUMO2	0	NOP58	3	affinity chromatography technology	Matic I (2010)	1
RAD50	3	RNF8	2	affinity chromatography technology	Lu CS (2012)	1
HSD17B10	1	ALDOA	0	biochemical, two hybrid	Wan C (2015), Narayan SB (2012)	2
RBBP4	3	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Zhang Y (2003), Hakimi MA (2003), Zhang Y (2002), Tong JK (1998), Sun JM (2007), Sun JM (2007), Adenuga D (2010), Xue Y (1998), Xue Y (1998), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Wan C (2015), Hauri S (2016)	14
HNRNPK	4	XRCC6	3	biochemical	Wan C (2015)	1
BABAM2	2	ABRAXAS1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Sowa ME (2009), Wang B (2009), Wang B (2009), Wang B (2009), Shao G (2009), Hu X (2011), Hu X (2011), Patterson-Fortin J (2010), Feng L (2009), Feng L (2009), Feng L (2009), Feng L (2009), Feng L (2009), Zheng H (2013)	14
SUMO2	0	XRCC6	3	pull down	Ouyang J (2009)	1
BRCA1	7	EEF1G	0	affinity chromatography technology	Ertych N (2016)	1
TRIM63	0	PIAS2	2	two hybrid	Witt CC (2008)	1
RBBP4	3	VCP	6	biochemical	Havugimana PC (2012)	1
SENP3	1	MRE11	3	affinity chromatography technology	Wang M (2016)	1
KDM1A	2	ZMYM3	0	affinity chromatography technology, affinity chromatography technology	Hakimi MA (2003), Lee MG (2005)	2
VIM	0	SETDB1	3	two hybrid	Goehler H (2004)	1
HSD17B10	1	ENO1	3	biochemical	Wan C (2015)	1
SUMO2	0	UBA2	0	affinity chromatography technology	Li T (2006)	1
TP53BP1	3	CUX1	7	affinity chromatography technology	Woods NT (2012)	1
BRCA1	7	HDAC2	1	pull down, affinity chromatography technology, genetic interference	Yarden RI (1999), Chang S (2011), Shen JP (2017)	3
BRCA1	7	DDX17	2	affinity chromatography technology	Ertych N (2016)	1
PIAS1	4	ATXN7	0	affinity chromatography technology	Janer A (2010)	1
HDAC1	4	SENP1	0	affinity chromatography technology	Cheng J (2004)	1
SUMO2	0	RCOR3	0	pull down	Ouyang J (2009)	1
BRCA1	7	KDM1A	2	two hybrid, affinity chromatography technology, affinity chromatography technology	Woods NT (2012), Woods NT (2012), Ertych N (2016)	3
SLX4	6	ERCC4	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, pull down, pull down, biochemical, two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, imaging technique, two hybrid, affinity chromatography technology, affinity chromatography technology	Svendsen JM (2009), Svendsen JM (2009), Svendsen JM (2009), Ghosal G (2012), Kim Y (2011), Andersen SL (2009), Munoz IM (2009), Munoz IM (2009), Munoz IM (2009), Munoz IM (2009), Fekairi S (2009), Kim Y (2013), Wilson JS (2013), Wilson JS (2013), Wan B (2013), Wan B (2013), Wan B (2013), Perez-Oliva AB (2015), Schuster B (2013), Bogliolo M (2013)	20
SENP3	1	PELP1	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical	Kashiwaya K (2010), Kashiwaya K (2010), Castle CD (2012), Castle CD (2012), Wan C (2015)	5
RANBP2	9	SP100	4	enzymatic study, enzymatic study	Tatham MH (2005), Pichler A (2002)	2
TOP2A	2	TOP2B	9	pull down, biochemical	Biersack H (1996), Havugimana PC (2012)	2
HDAC1	4	RCOR3	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Bantscheff M (2011), Joshi P (2013), Hein MY (2015), Huttlin EL (2017)	4
TOPORS	6	EEF1A1	0	affinity chromatography technology	Pungaliya P (2007)	1
ELAVL1	0	ZBTB33	1	affinity chromatography technology	Abdelmohsen K (2009)	1
TRIM63	0	ALDOA	0	two hybrid	Witt SH (2005)	1
UBC	7	RUVBL1	2	affinity chromatography technology	Matsumoto M (2005)	1
TOP2A	2	SSRP1	1	biochemical	Wan C (2015)	1
HDAC1	4	CASP8AP2	3	affinity chromatography technology	Huttlin EL (2017)	1
RBBP7	1	GATAD2B	15	pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Feng Q (2002), Feng Q (2002), Gong Z (2006), Huttlin EL (2015), Huttlin EL (2017), Hauri S (2016)	6
SUMO2	0	ALDOA	0	biochemical	Wan C (2015)	1
EP300	36	UBC	7	enzymatic study, affinity chromatography technology	Delvecchio M (2013), Kirilyuk A (2012)	2
BLM	2	ATRX	7	affinity chromatography technology, affinity chromatography technology, pull down, pull down	Srivastava V (2009), Srivastava V (2009), Srivastava V (2009), Srivastava V (2009)	4
ZBTB33	1	TRIML2	0	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
SUMO2	0	ZBTB2	1	pull down	Ouyang J (2009)	1
USP11	3	USP7	14	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Sowa ME (2009), Sowa ME (2009), Maertens GN (2010), Maertens GN (2010), Ma H (2012), Hein MY (2015)	7
UBC	7	DCD	0	affinity chromatography technology	Matsumoto M (2005)	1
USP28	3	KDM1A	2	affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study	Wu Y (2013), Wu Y (2013), Wu Y (2013), Wu Y (2013)	4
HSP90AB1	2	NUMA1	10	affinity chromatography technology	Falsone SF (2005)	1
ELAVL1	0	C18orf25	3	affinity chromatography technology	Abdelmohsen K (2009)	1
HDAC2	1	SETDB1	3	affinity chromatography technology	Yang L (2003)	1
VCP	6	TUBB4B	6	affinity chromatography technology, biochemical	Fogeron ML (2013), Wan C (2015)	2
SENP7	5	TRIM28	1	affinity chromatography technology, enzymatic study, affinity chromatography technology	Garvin AJ (2013), Garvin AJ (2013), Hauri S (2016)	3
SUMO2	0	ZCCHC7	0	two hybrid	Hecker CM (2006)	1
BRCA1	7	HSPA9	2	affinity chromatography technology	Ertych N (2016)	1
TRIML2	0	PML	7	affinity chromatography technology	Huttlin EL (2017)	1
SOD1	0	ANXA1	1	affinity chromatography technology	Malty RH (2017)	1
SUMO2	0	PARN	2	pull down	Ouyang J (2009)	1
SLX4IP	3	ERCC4	2	affinity chromatography technology	Svendsen JM (2009)	1
MDC1	8	BABAM2	2	affinity chromatography technology	Woods NT (2012)	1
RNF8	2	MDC1	8	pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique	Huen MS (2007), Mailand N (2007), Mailand N (2007), Kolas NK (2007), Kolas NK (2007), Watanabe S (2013), Henriksson S (2014), Henriksson S (2014), Rassoolzadeh H (2015)	9
UBE2I	0	ZBED1	0	two hybrid, two hybrid	Rual JF (2005), Rolland T (2014)	2
SUMO2	0	EEF1G	0	pull down	Ouyang J (2009)	1
CHD3	19	VIM	0	two hybrid	Goehler H (2004)	1
MTA1	3	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Yao YL (2003), Yao YL (2003), Hakimi MA (2003), Mazumdar A (2001), Mazumdar A (2001), Mazumdar A (2001), Li DQ (2010), Yan C (2003), Balasenthil S (2007), Ohshiro K (2010), Xue Y (1998), Xue Y (1998), Cui S (2011), Bantscheff M (2011), Joshi P (2013), Wan C (2015)	16
TP53BP1	3	MTA2	1	affinity chromatography technology	Woods NT (2012)	1
LAS1L	3	TEX10	3	biochemical, affinity chromatography technology, affinity chromatography technology, biochemical	Havugimana PC (2012), Castle CD (2012), Castle CD (2012), Wan C (2015)	4
CHAF1A	1	SETDB1	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Loyola A (2009), Sarraf SA (2004), Sarraf SA (2004)	3
EP300	36	TDG	0	enzymatic study	Tini M (2002)	1
DNM1L	3	VCP	6	affinity chromatography technology	Malty RH (2017)	1
HNRNPK	4	RANBP2	9	biochemical	Havugimana PC (2012)	1
XRCC5	5	TMPO	0	affinity chromatography technology, affinity chromatography technology	Sand-Dejmek J (2011), Brady GF (2018)	2
ZNF451	3	PIAS2	2	two hybrid	Karvonen U (2008)	1
MDC1	8	MKI67	7	affinity chromatography technology	Woods NT (2012)	1
ENO1	3	HSPA9	2	affinity chromatography technology	Castello A (2012)	1
AHCYL1	2	SP100	4	biochemical	Havugimana PC (2012)	1
TMPO	0	AHNAK	15	affinity chromatography technology	Brady GF (2018)	1
VCP	6	HSP90AB1	2	affinity chromatography technology	Yu CC (2013)	1
HDAC1	4	TRIM28	1	affinity chromatography technology, affinity chromatography technology, biochemical	Allouch A (2011), Chen L (2012), Kristensen AR (2012)	3
EWSR1	2	SEC23A	3	affinity chromatography technology	Elzi DJ (2014)	1
SENP5	1	SUMO2	0	enzymatic study	Gong L (2006)	1
RBBP4	3	XRCC6	3	two hybrid	Stelzl U (2005)	1
RBBP4	3	GATAD2B	15	pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Feng Q (2002), Feng Q (2002), Gong Z (2006), Huttlin EL (2017), Hauri S (2016)	5
SUMO2	0	ZBTB33	1	pull down	Ouyang J (2009)	1
SUMO2	0	UBE2I	0	affinity chromatography technology, pull down, two hybrid, two hybrid, pull down, pull down, enzymatic study, enzymatic study, pull down, enzymatic study, enzymatic study, biochemical, affinity chromatography technology, affinity chromatography technology	Li T (2006), Knipscheer P (2007), Boutell C (2011), Hecker CM (2006), Hecker CM (2006), Zilio N (2013), Tatham MH (2001), Knipscheer P (2007), Ullmann R (2012), Matic I (2008), Xu Y (2014), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	14
CHAF1B	2	SETDB1	3	affinity chromatography technology	Loyola A (2009)	1
MDC1	8	CHAMP1	8	affinity chromatography technology	Woods NT (2012)	1
EP300	36	HDAC1	4	affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, enzymatic study, affinity chromatography technology	Han Y (2008), Mayanil CS (2006), Simone C (2004), Simone C (2004), Simone C (2004), Liu Y (2012), Mizuguchi Y (2012)	7
PRKDC	12	MRE11	3	unspecified method	Kim ST (1999)	1
USP7	14	EWSR1	2	two hybrid	Lim J (2006)	1
SUMO2	0	TEAD3	0	two hybrid	Wang J (2011)	1
EEF1A1	0	HSPA1A	0	biochemical	Havugimana PC (2012)	1
ELAVL1	0	MDC1	8	affinity chromatography technology	Abdelmohsen K (2009)	1
HIPK2	0	SP100	4	affinity chromatography technology	Moeller A (2003)	1
TEX10	3	NOL9	1	biochemical, affinity chromatography technology	Wan C (2015), Huttlin EL (2017)	2
SUMO2	0	SEC23A	3	biochemical	Wan C (2015)	1
DAXX	5	SUPT16H	4	affinity chromatography technology	Hein MY (2015)	1
RANBP2	9	UBA2	0	affinity chromatography technology	Sarkar K (2015)	1
SUMO2	0	ZMYM3	0	pull down	Guzzo CM (2014)	1
SUMO2	0	ANXA1	1	pull down	Ouyang J (2009)	1
UBE2I	0	PRKDC	12	enzymatic study	Matafora V (2009)	1
UIMC1	4	UBC	7	pull down, pull down, pull down, pull down, pull down, pull down, unspecified method, unspecified method, x-ray crystallography, pull down, x-ray crystallography, pull down, pull down, affinity chromatography technology, affinity chromatography technology, pull down, x-ray crystallography, pull down, pull down, pull down, pull down, pull down, pull down, affinity chromatography technology, pull down	Sobhian B (2007), Sobhian B (2007), Wang B (2009), Hu X (2012), Sekiyama N (2012), Cho HJ (2009), Markin CJ (2010), Sekiyama N (2012), Sekiyama N (2012), Sato Y (2009), Sato Y (2009), Nikkilae J (2009), Nikkilae J (2009), Wu J (2009), Guzzo CM (2012), Nathan JA (2013), Anamika A (2014), Kensche T (2012), Yan J (2007), Castaneda CA (2013), Nakasone MA (2013), Thach TT (2015), Zhang X (2017), Li Y (2017), Kristariyanto YA (2017)	25
XRCC6	3	MSH2	4	affinity chromatography technology, biochemical	Shahi A (2011), Kristensen AR (2012)	2
SUMO2	0	RBBP7	1	pull down	Ouyang J (2009)	1
BRCA1	7	PGD	2	affinity chromatography technology	Ertych N (2016)	1
MUS81	1	EME1	3	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down	Ciccia A (2003), Fekairi S (2009), Matos J (2011), Zeng S (2009), Nair N (2014), Huttlin EL (2017), Gwon GH (2014), Zhou X (2016), Phung HTT (2018)	9
HNRNPF	5	RANBP2	9	biochemical	Havugimana PC (2012)	1
SUMO2	0	PIAS4	5	pull down, two hybrid, two hybrid, pull down, pull down	Goehler H (2004), Goehler H (2004), Hecker CM (2006), Ullmann R (2012), Ouyang J (2009)	5
TMPO	0	HNRNPK	4	affinity chromatography technology	Brady GF (2018)	1
SUMO2	0	MKI67	7	pull down	Ouyang J (2009)	1
PML	7	TDG	0	affinity chromatography technology, pull down, imaging technique	Takahashi H (2005), Takahashi H (2005), Mohan RD (2007)	3
ELAVL1	0	ZHX1	1	affinity chromatography technology	Abdelmohsen K (2009)	1
ATRX	7	MRE11	3	affinity chromatography technology, affinity chromatography technology	Leung JW (2013), Huh MS (2016)	2
TOPORS	6	UBC	7	enzymatic study	Rajendra R (2004)	1
BAZ1A	5	RBBP4	3	biochemical	Havugimana PC (2012)	1
SUMO2	0	DDX21	0	pull down	Ouyang J (2009)	1
MDC1	8	NUMA1	10	affinity chromatography technology	Woods NT (2012)	1
UBE2I	0	C18orf25	3	two hybrid	Rual JF (2005)	1
MDC1	8	PRKDC	12	pull down, affinity chromatography technology, imaging technique, affinity chromatography technology	Lou Z (2004), Lou Z (2004), Lou Z (2004), Lou Z (2004)	4
MAPK6	1	UBC	7	affinity chromatography technology	Rodriguez J (2016)	1
MAPK6	1	HSP90AB1	2	two hybrid	Bandyopadhyay S (2010)	1
EEF1A1	0	RPL4	4	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
USP11	3	SETDB1	3	two hybrid	Stelzl U (2005)	1
SUMO2	0	TDP2	2	two hybrid, pull down	Hecker CM (2006), Hecker CM (2006)	2
ELAVL1	0	PRKDC	12	affinity chromatography technology	Abdelmohsen K (2009)	1
RNF4	1	TDG	0	affinity chromatography technology, affinity chromatography technology	Hu XV (2010), Hu XV (2010)	2
CHD3	19	RBBP4	3	affinity chromatography technology, biochemical, affinity chromatography technology	Xue Y (1998), Havugimana PC (2012), Hauri S (2016)	3
SUMO2	0	PFKM	4	pull down	Ouyang J (2009)	1
BLM	2	CSNK2B	5	genetic interference	Vizeacoumar FJ (2013)	1
DAXX	5	BAZ1B	5	affinity chromatography technology	Hein MY (2015)	1
TMPO	0	HNRNPF	5	affinity chromatography technology	Brady GF (2018)	1
EWSR1	2	TRAF1	0	two hybrid	Rolland T (2014)	1
ELAVL1	0	RCOR3	0	affinity chromatography technology	Abdelmohsen K (2009)	1
MAF1	0	RAD50	3	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
TOPORS	6	RBBP4	3	affinity chromatography technology	Pungaliya P (2007)	1
MRE11	3	XRCC6	3	two hybrid, pull down, affinity chromatography technology, biochemical	Goedecke W (1999), Goedecke W (1999), Goedecke W (1999), Wan C (2015)	4
UBE2I	0	HDAC1	4	enzymatic study	Citro S (2013)	1
SOD1	0	VCP	6	affinity chromatography technology	Malty RH (2017)	1
SUMO2	0	LAS1L	3	pull down	Ouyang J (2009)	1
PELP1	3	IPO5	0	affinity chromatography technology, biochemical	Castle CD (2012), Castle CD (2012)	2
SUMO2	0	TRAF1	0	pull down	Ouyang J (2009)	1
HDAC1	4	HDAC2	1	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, imaging technique, affinity chromatography technology	Hakimi MA (2002), Yao YL (2003), Yao YL (2003), Hakimi MA (2003), Fischle W (2002), Johnson CA (2002), Fischle W (2001), Fischer DD (2002), Fischer DD (2002), Ashburner BP (2001), Zhang Y (1999), Tong JK (1998), Tong JK (1998), Hassig CA (1998), Hassig CA (1998), Zhang Y (1997), van der Vlag J (1999), van der Vlag J (1999), Noh EJ (2009), Noh EJ (2009), Galasinski SC (2002), Galasinski SC (2002), Galasinski SC (2002), He S (2005), Humphrey GW (2001), Park JH (2004), Park JH (2004), Sekhavat A (2007), Zhang Y (1998), Zhang Y (1998), Adenuga D (2010), Xue Y (1998), Xue Y (1998), Martinez FP (2012), Martinez FP (2012), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Joshi P (2013), Schnur N (2007), Schnur N (2007), Oh YM (2009), Wan C (2015), Hein MY (2015), Chen TC (2014), Huttlin EL (2017)	48
WRN	6	CHAF1A	1	far western blotting, far western blotting, imaging technique, affinity chromatography technology, affinity chromatography technology	Jiao R (2007), Jiao R (2007), Jiao R (2007), Jiao R (2007), Jiao R (2007)	5
DAXX	5	USP7	14	pull down, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Tang J (2006), Tang J (2006), Tang J (2006), Tang J (2006), Song MS (2008), Giovinazzi S (2013), Giovinazzi S (2013), Giovinazzi S (2013), Kumar N (2013)	9
CASP8AP2	3	SUMO2	0	pull down, affinity chromatography technology	Sun H (2012), Sun H (2012)	2
RUVBL1	2	HSPA8	4	affinity chromatography technology	Jeronimo C (2007)	1
AHCYL1	2	SUMO2	0	biochemical	Havugimana PC (2012)	1
ATRX	7	ZBED1	0	affinity chromatography technology, pull down	Valadez-Graham V (2012), Valadez-Graham V (2012)	2
SUMO2	0	SSRP1	1	pull down	Ouyang J (2009)	1
HDAC1	4	DDX17	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wilson BJ (2004), Wilson BJ (2004), Mooney SM (2010), Mooney SM (2010)	4
ALDOA	0	ENO1	3	biochemical	Wan C (2015)	1
MAST2	4	SUMO2	0	two hybrid	Wang J (2011)	1
BABAM2	2	BRCA1	7	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Dong Y (2003), Dong Y (2003), Dong Y (2003), Woods NT (2012), Hill SJ (2014)	5
BRCA1	7	MKI67	7	affinity chromatography technology, affinity chromatography technology	Hill SJ (2014), Ertych N (2016)	2
PRKDC	12	XRCC6	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, enzymatic study, enzymatic study, affinity chromatography technology	Shao RG (1999), Drouet J (2005), Gottlieb TM (1993), Shamanna RA (2011), Shamanna RA (2011), Havugimana PC (2012), Sartorius CA (2000), Sartorius CA (2000), Hein MY (2015)	9
IRF7	2	TRIM28	1	affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study	Liang Q (2011), Liang Q (2011), Liang Q (2011), Liang Q (2011)	4
PML	7	MYB	3	affinity chromatography technology, pull down	Dahle O (2004), Dahle O (2004)	2
VIM	0	ZHX1	1	two hybrid	Goehler H (2004)	1
SOD1	0	XRCC6	3	affinity chromatography technology	Malty RH (2017)	1
SUMO2	0	HSPA8	4	pull down	Ouyang J (2009)	1
RUVBL1	2	TUBB	3	affinity chromatography technology	Izumi N (2010)	1
HDAC1	4	PML	7	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, pull down, affinity chromatography technology, imaging technique, affinity chromatography technology	Khan MM (2001), Khan MM (2001), Wu WS (2001), Wu WS (2001), Wu WS (2001), Wu WS (2001), Wu WS (2001), Morey L (2008), Kuo HY (2013), Kim YE (2015)	10
SUMO2	0	HOMEZ	2	two hybrid	Rolland T (2014)	1
MDC1	8	NBN	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, unspecified method, unspecified method, pull down, affinity chromatography technology, imaging technique	Xu X (2003), Goldberg M (2003), Goldberg M (2003), Lukas C (2004), Cha H (2010), Stewart GS (2003), Stewart GS (2003), Stewart GS (2003), Lou Z (2004), Hari FJ (2010), Lu CS (2012), Wu L (2008), Wu L (2008), Wu L (2008), Chapman JR (2008), Chapman JR (2008), Chapman JR (2008), Chapman JR (2008)	18
SENP3	1	EP300	36	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang Y (2012), Wang Y (2012), Huang C (2009)	3
SDHAF2	1	HSPA8	4	affinity chromatography technology	Hein MY (2015)	1
NFE2L2	1	HDAC2	1	affinity chromatography technology	Lee DY (2012)	1
EEF1A1	0	HSD17B10	1	biochemical	Wan C (2015)	1
HIPK2	0	EP300	36	enzymatic study, affinity chromatography technology, affinity chromatography technology, pull down	Aikawa Y (2006), Aikawa Y (2006), Aikawa Y (2006), Aikawa Y (2006)	4
PIAS2	2	PIAS1	4	imaging technique	Chen TC (2014)	1
EWSR1	2	SAE1	0	bioid	Elzi DJ (2014)	1
MYB	3	EP300	36	pull down, imaging technique, affinity chromatography technology, enzymatic study, pull down	Nicot C (2001), Jin W (2011), Sandberg ML (2005), Tomita A (2000), Uttarkar S (2015)	5
EEF1A1	0	DDX17	2	biochemical	Wan C (2015)	1
ELAVL1	0	HNRNPF	5	affinity chromatography technology	Abdelmohsen K (2009)	1
SUMO2	0	CTNND1	4	pull down	Ouyang J (2009)	1
TMPO	0	RPL3	0	affinity chromatography technology	Brady GF (2018)	1
DDX21	0	NOP2	4	biochemical	Havugimana PC (2012)	1
WRN	6	XRCC5	5	affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Karmakar P (2002), Karmakar P (2002), Li B (2000), Cooper MP (2000), Cooper MP (2000), Cooper MP (2000), Orren DK (2001), Li B (2004), Li B (2004), Sand-Dejmek J (2011), Sand-Dejmek J (2011), Partridge JJ (2003), Partridge JJ (2003), Hein MY (2015)	14
RANBP2	9	IPO5	0	biochemical	Wan C (2015)	1
ATRX	7	WRN	6	far western blotting	Otterlei M (2006)	1
TRAF1	0	TUBB4B	6	affinity chromatography technology	Greenfeld H (2015)	1
CASP8AP2	3	PIAS1	4	two hybrid, pull down, affinity chromatography technology, affinity chromatography technology	Alm-Kristiansen AH (2011), Alm-Kristiansen AH (2011), Alm-Kristiansen AH (2011), Alm-Kristiansen AH (2011)	4
USP7	14	RNF168	0	pull down, affinity chromatography technology	Zhu Q (2015), Zhu Q (2015)	2
SUMO2	0	TPR	5	pull down	Ouyang J (2009)	1
EEF1A1	0	HSPA9	2	biochemical	Wan C (2015)	1
LAS1L	3	PELP1	3	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical	Kashiwaya K (2010), Kashiwaya K (2010), Havugimana PC (2012), Castle CD (2012), Castle CD (2012), Castle CD (2012), Castle CD (2012), Wan C (2015)	8
SUMO2	0	EXOSC9	2	pull down	Ouyang J (2009)	1
RNF168	0	TOP2A	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, enzymatic study	Guturi KK (2016), Guturi KK (2016), Guturi KK (2016), Guturi KK (2016), Guturi KK (2016)	5
SUMO2	0	BAZ1A	5	pull down	Ouyang J (2009)	1
ELAVL1	0	MTA1	3	affinity chromatography technology	Abdelmohsen K (2009)	1
HSD17B10	1	EEF1G	0	affinity chromatography technology	Malty RH (2017)	1
PIAS1	4	PML	7	affinity chromatography technology, affinity chromatography technology, enzymatic study	Rabellino A (2012), Rabellino A (2012), Rabellino A (2012)	3
SUMO2	0	TOP2A	2	pull down	Ouyang J (2009)	1
UBE2I	0	RNF111	2	two hybrid, two hybrid, two hybrid	Markson G (2009), Bandyopadhyay S (2010), Rolland T (2014)	3
SUMO2	0	VIM	0	two hybrid, two hybrid	Stelzl U (2005), Vinayagam A (2011)	2
UBE2I	0	USP25	0	enzymatic study, pull down	Meulmeester E (2008), Meulmeester E (2008)	2
UBE2I	0	PML	7	enzymatic study, pull down, enzymatic study, two hybrid, two hybrid, enzymatic study, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, pull down	Knipscheer P (2008), Kim YE (2005), Satow R (2012), Duprez E (1999), Wang J (2011), Tatham MH (2003), Duprez E (1999), Gocke CB (2005), Lin DY (2006), Jo S (2016), Schilling EM (2017)	11
TMPO	0	PRKDC	12	affinity chromatography technology	Brady GF (2018)	1
SOD1	0	ENO1	3	biochemical	Wan C (2015)	1
ELAVL1	0	TUBB	3	affinity chromatography technology	Abdelmohsen K (2009)	1
CHD3	19	RBBP7	1	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Huttlin EL (2015), Huttlin EL (2017), Hauri S (2016)	4
TMPO	0	RPL4	4	affinity chromatography technology	Brady GF (2018)	1
POGZ	49	ZMYM4	4	affinity chromatography technology	Vermeulen M (2010)	1
CSNK2B	5	SIMC1	3	two hybrid	Vinayagam A (2011)	1
HDAC1	4	IPO5	0	affinity chromatography technology	Hein MY (2015)	1
EP300	36	PRKDC	12	pull down	Karmakar S (2010)	1
WRN	6	VCP	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Partridge JJ (2003), Partridge JJ (2003), Indig FE (2004)	3
SUMO2	0	RCOR1	0	pull down	Ouyang J (2009)	1
NOP2	4	TOP2A	2	biochemical	Wan C (2015)	1
MUS81	1	WRN	6	genetic interference	Vizeacoumar FJ (2013)	1
NBN	1	RNF8	2	affinity chromatography technology, enzymatic study, affinity chromatography technology	Lu CS (2012), Lu CS (2012), Monsalve DM (2016)	3
RNF8	2	CHD4	22	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Luijsterburg MS (2012), Luijsterburg MS (2012), Luijsterburg MS (2012), Qi W (2016)	4
BRCC3	0	ABRAXAS1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Wang B (2007), Wang B (2009), Wang B (2009), Wang B (2009), Shao G (2009), Shao G (2009), Hu X (2011), Hu X (2011), Patterson-Fortin J (2010), Patterson-Fortin J (2010), Feng L (2009), Feng L (2009), Feng L (2009), Feng L (2009), Feng L (2009), Feng L (2010), Solyom S (2012), Zheng H (2013)	19
SUMO2	0	TUBA1B	0	pull down	Ouyang J (2009)	1
VCP	6	VIM	0	affinity chromatography technology	Yu CC (2013)	1
SUMO2	0	UIMC1	4	affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography	Hu X (2012), Hu X (2012), Hu X (2012), Hu X (2012), Guzzo CM (2012), Guzzo CM (2012), Anamika (2016)	7
DNM1L	3	RUVBL1	2	affinity chromatography technology	Malty RH (2017)	1
UBC	7	MKI67	7	affinity chromatography technology	Matsumoto M (2005)	1
XRCC5	5	NBN	1	affinity chromatography technology	Falck J (2005)	1
TRAF1	0	TNIP1	1	affinity chromatography technology	Greenfeld H (2015)	1
RBBP7	1	ZBTB2	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
UBC	7	TNIP1	1	affinity chromatography technology, x-ray crystallography, pull down, pull down, pull down, pull down	Wagner S (2008), Wagner S (2008), Fenner BJ (2009), Verhelst K (2012), Zhang X (2017), Kliza K (2017)	6
MRE11	3	RNF8	2	affinity chromatography technology	Lu CS (2012)	1
DAXX	5	UBC	7	two hybrid	Bandyopadhyay S (2010)	1
ZNF451	3	PML	7	enzymatic study	Koidl S (2016)	1
RNF8	2	UBC	7	enzymatic study, enzymatic study, enzymatic study	Feng L (2012), Hodge CD (2015), Ho YK (2015)	3
UBE2I	0	SLX4	6	affinity chromatography technology, pull down	Guervilly JH (2015), Guervilly JH (2015)	2
SENP3	1	HSP90AB1	2	affinity chromatography technology	Wang M (2016)	1
SENP1	0	USP25	0	enzymatic study	Meulmeester E (2008)	1
NOP2	4	RPL4	4	biochemical	Havugimana PC (2012)	1
USP11	3	RAD50	3	affinity chromatography technology	Sowa ME (2009)	1
MDC1	8	LAS1L	3	affinity chromatography technology	Woods NT (2012)	1
USP28	3	UBC	7	enzymatic study, enzymatic study, x-ray crystallography, enzymatic study, pull down, enzymatic study, pull down	Loch CM (2012), Zhen Y (2014), Wen Y (2015), Wen Y (2015), Wen Y (2015), Wrigley JD (2017), Kwasna D (2018)	7
ZMYM2	5	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Gocke CB (2008), Joshi P (2013), Hein MY (2015), Huttlin EL (2017)	4
SUMO2	0	TOPORS	6	two hybrid	Hecker CM (2006)	1
CHD4	22	EP300	36	affinity chromatography technology, affinity chromatography technology, pull down	Qi W (2016), Qi W (2016), Qi W (2016)	3
TP53BP1	3	TMPO	0	affinity chromatography technology	Woods NT (2012)	1
UBC	7	UBA2	0	pull down	Gong L (1999)	1
RNF8	2	BLM	2	enzymatic study, pull down	Tikoo S (2013), Tikoo S (2013)	2
SSRP1	1	SUPT16H	4	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Birch JL (2009), Tan BC (2006), Tan BC (2006), Pavri R (2006), Huang JY (2006), Huang JY (2006), OConnell BC (2010), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017), Boldt K (2016)	12
ELAVL1	0	PIAS3	2	affinity chromatography technology	Abdelmohsen K (2009)	1
CTSA	2	SUMO2	0	biochemical	Havugimana PC (2012)	1
HDAC1	4	KDM1A	2	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Hakimi MA (2002), Hakimi MA (2003), You A (2001), You A (2001), Shi YJ (2005), Lee MG (2005), Humphrey GW (2001), Humphrey GW (2001), Humphrey GW (2001), Godmann M (2007), Godmann M (2007), Terhune SS (2010), Godmann M (2010), Godmann M (2010), Wang Y (2009), Nicholson TB (2011), Li Q (2011), Cui S (2011), Cui S (2011), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Wan C (2015), Hein MY (2015), Wang Q (2016), Huttlin EL (2017)	26
SUMO2	0	TRIM28	1	pull down	Ouyang J (2009)	1
HNRNPF	5	HNRNPK	4	biochemical	Havugimana PC (2012)	1
SUMO2	0	PIAS1	4	pull down, two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, pull down, pull down, pull down	Gocke CB (2008), Stehmeier P (2009), Stehmeier P (2009), Ullmann R (2012), Hecker CM (2006), Hecker CM (2006), Ullmann R (2012), Ullmann R (2012), Ouyang J (2009)	9
SUMO2	0	DDX3X	52	pull down	Ouyang J (2009)	1
UBC	7	HNRNPK	4	affinity chromatography technology	Matsumoto M (2005)	1
SUMO2	0	RAD54L2	5	pull down	Ouyang J (2009)	1
USP11	3	PML	7	affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study	Wu HC (2014), Wu HC (2014), Wu HC (2014), Wu HC (2014)	4
HDAC2	1	TOP2A	2	affinity chromatography technology	Tsai SC (2000)	1
TP53BP1	3	BRCA1	7	affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology	Matsuoka S (2007), Wang B (2002), Bohgaki T (2011), Ertych N (2016)	4
SUMO2	0	ERCC4	2	pull down, pull down	Ouyang J (2009), Ouyang J (2015)	2
PRKDC	12	BRCA1	7	unspecified method	Kim ST (1999)	1
CHD4	22	RBBP4	3	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Xue Y (1998), Cui S (2011), Cui S (2011), Havugimana PC (2012), Wan C (2015), Hauri S (2016)	9
BRCA1	7	MRE11	3	biochemical, pull down, biochemical, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang Y (2000), Paull TT (2001), Chiba N (2001), Chiba N (2001), Zhong Q (1999), Greenberg RA (2006), Zhao GY (2007), Hill SJ (2014), Suhasini AN (2013)	9
DAXX	5	MKI67	7	affinity chromatography technology	Hein MY (2015)	1
SUMO2	0	MTA1	3	pull down	Ouyang J (2009)	1
BRCA1	7	VCP	6	affinity chromatography technology, pull down, affinity chromatography technology	Zhang H (2000), Zhang H (2000), Ertych N (2016)	3
SLX4	6	SLX4IP	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology	Svendsen JM (2009), Svendsen JM (2009), Svendsen JM (2009), Svendsen JM (2009), Ghosal G (2012)	5
UBE2I	0	PIAS3	2	two hybrid, two hybrid	Bandyopadhyay S (2010), Wang J (2011)	2
SUMO2	0	RPL4	4	pull down	Ouyang J (2009)	1
MYB	3	SP100	4	two hybrid	Ravasi T (2010)	1
SUMO2	0	NBN	1	pull down	Ouyang J (2009)	1
HIPK2	0	DAXX	5	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Hofmann TG (2003), Hofmann TG (2003), McDonough H (2009), Kumar N (2013)	4
HDAC2	1	RCOR3	0	affinity chromatography technology, affinity chromatography technology	Bantscheff M (2011), Joshi P (2013)	2
NOP58	3	RUVBL1	2	affinity chromatography technology, affinity chromatography technology	Bizarro J (2014), Cloutier P (2017)	2
TRIM63	0	EEF1G	0	two hybrid, pull down	Witt CC (2008), Witt CC (2008)	2
SLX4	6	MSH2	4	affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology	Svendsen JM (2009), Svendsen JM (2009), Svendsen JM (2009), Ghosal G (2012)	4
TMPO	0	RUVBL1	2	affinity chromatography technology	Brady GF (2018)	1
SUMO2	0	HDAC2	1	pull down	Ouyang J (2009)	1
TP53BP1	3	UBE2I	0	imaging technique	Galanty Y (2009)	1
TOPORS	6	UBE2I	0	two hybrid, pull down	Weger S (2003), Weger S (2005)	2
MDC1	8	XRCC5	5	pull down, affinity chromatography technology	Lou Z (2004), Lou Z (2004)	2
HSD17B10	1	TRIM28	1	affinity chromatography technology	Malty RH (2017)	1
TMPO	0	ATRX	7	affinity chromatography technology	Hein MY (2015)	1
BAD	1	EWSR1	2	two hybrid	Rual JF (2005)	1
SOD1	0	EEF1G	0	affinity chromatography technology	Malty RH (2017)	1
SUMO2	0	SUMO2	0	x-ray crystallography, pull down	Kung CC (2014), Ouyang J (2009)	2
VCP	6	HNRNPH1	3	affinity chromatography technology	Fogeron ML (2013)	1
HSP90AB1	2	HSPA8	4	biochemical, affinity chromatography technology	Wan C (2015), Reidy M (2018)	2
RNF4	1	SUMO2	0	fluorescent resonance energy transfe, affinity chromatography technology, pull down, enzymatic study, pull down, enzymatic study, enzymatic study, pull down, x-ray crystallography, pull down, enzymatic study, pull down, pull down, pull down, affinity chromatography technology, enzymatic study	Geoffroy MC (2010), Bruderer R (2011), Bruderer R (2011), Tatham MH (2008), Sun H (2012), Tatham MH (2013), Erker Y (2013), Keusekotten K (2014), Kung CC (2014), Kung CC (2014), Xu Y (2014), Yin Y (2012), Tatham MH (2008), Xu Y (2014), Ouyang J (2015), Lecona E (2016)	16
VCP	6	CSNK2B	5	affinity chromatography technology	Yu CC (2013)	1
HNRNPK	4	PIAS3	2	affinity chromatography technology	Lee SW (2012)	1
SOD1	0	PSAP	3	affinity chromatography technology	Malty RH (2017)	1
HSP90AB1	2	TUBB	3	biochemical	Wan C (2015)	1
SUMO2	0	RAD50	3	pull down	Ouyang J (2009)	1
ATRX	7	XRCC6	3	affinity chromatography technology	Leung JW (2013)	1
SEC23A	3	CARS	1	biochemical	Kristensen AR (2012)	1
ELAVL1	0	DDX17	2	affinity chromatography technology	Abdelmohsen K (2009)	1
EWSR1	2	HDAC2	1	biochemical	Havugimana PC (2012)	1
SENP7	5	RBBP4	3	affinity chromatography technology	Hauri S (2016)	1
CHAMP1	8	ZMYM4	4	affinity chromatography technology	Hein MY (2015)	1
PML	7	TOP2B	9	affinity chromatography technology	McNamara S (2008)	1
SSSCA1	0	TUBB6	2	biochemical	Havugimana PC (2012)	1
SOBP	2	SUMO2	0	pull down	Sun H (2012)	1
RNF111	2	PML	7	affinity chromatography technology, two hybrid	Erker Y (2013), Woodsmith J (2012)	2
UIMC1	4	MDC1	8	imaging technique, affinity chromatography technology, affinity chromatography technology, biochemical, pull down, pull down, affinity chromatography technology	Strauss C (2011), Strauss C (2011), Strauss C (2011), Strauss C (2011), Strauss C (2011), Strauss C (2011), Woods NT (2012)	7
BRCA1	7	PIAS4	5	imaging technique, enzymatic study, imaging technique	Galanty Y (2009), Morris JR (2009), Morris JR (2009)	3
VCP	6	CTNND1	4	affinity chromatography technology	Yu CC (2013)	1
SUMO2	0	ZBTB21	2	affinity chromatography technology	Matic I (2010)	1
SUMO2	0	TUBB6	2	pull down	Ouyang J (2009)	1
SUMO2	0	ZMYM5	1	two hybrid	Hecker CM (2006)	1
PIAS4	5	HDAC2	1	pull down	Gross M (2004)	1
BLM	2	VCP	6	genetic interference	Vizeacoumar FJ (2013)	1
HSPA8	4	UBC	7	two hybrid	Stelzl U (2005)	1
ELAVL1	0	SENP2	3	affinity chromatography technology	Abdelmohsen K (2009)	1
SENP7	5	SUMO2	0	unspecified method	Garvin AJ (2013)	1
UBE2I	0	NOP2	4	enzymatic study	Matafora V (2009)	1
TP53BP1	3	RNF168	0	imaging technique, imaging technique, affinity chromatography technology	Galanty Y (2009), Bohgaki T (2011), Peng B (2015)	3
XRCC5	5	PRKDC	12	pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, imaging technique, affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, biochemical, affinity chromatography technology	Jin S (1997), Matheos D (2002), Gell D (1999), Drouet J (2005), Falck J (2005), Falck J (2005), Falck J (2005), Olsen BB (2012), Olsen BB (2012), Sand-Dejmek J (2011), Sartorius CA (2000), Sartorius CA (2000), Drouet J (2006), Drouet J (2006), Sibanda BL (2010), Wan C (2015), Hein MY (2015)	17
MRE11	3	BLM	2	biochemical	Wang Y (2000)	1
MRE11	3	MSH2	4	biochemical	Wang Y (2000)	1
PML	7	ATRX	7	affinity chromatography technology, imaging technique	Delbarre E (2013), Delbarre E (2013)	2
UBC	7	TRIM28	1	affinity chromatography technology, enzymatic study	Matsumoto M (2005), Doyle JM (2010)	2
ZMYM4	4	TRIM28	1	affinity chromatography technology	Hauri S (2016)	1
RNF8	2	XRCC5	5	affinity chromatography technology	Feng L (2012)	1
UBE2I	0	TDG	0	enzymatic study, enzymatic study, enzymatic study	Knipscheer P (2008), Mohan RD (2007), Coey CT (2014)	3
BRCA1	7	MSH2	4	two hybrid, pull down, biochemical, affinity chromatography technology, genetic interference	Wang Q (2001), Wang Q (2001), Wang Y (2000), Wada-Hiraike O (2005), Peng M (2014)	5
SUMO2	0	PRKDC	12	pull down	Ouyang J (2009)	1
EWSR1	2	RUVBL1	2	affinity chromatography technology	Elzi DJ (2014)	1
SUMO2	0	TMPO	0	pull down	Ouyang J (2009)	1
ZCCHC7	0	SENP5	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
SDHAF2	1	SUMO2	0	biochemical	Havugimana PC (2012)	1
CARS	1	EEF1G	0	two hybrid, pull down, affinity chromatography technology, affinity chromatography technology	Kim JE (2000), Kim JE (2000), Huttlin EL (2015), Huttlin EL (2017)	4
ZBTB33	1	EP300	36	affinity chromatography technology, affinity chromatography technology	Koh DI (2014), Koh DI (2014)	2
EWSR1	2	CHAF1A	1	bioid	Elzi DJ (2014)	1
PML	7	SP100	4	imaging technique, imaging technique, imaging technique, imaging technique, two hybrid, imaging technique	Cuchet-Lourenco D (2011), Cuchet-Lourenco D (2011), Cuchet D (2011), Negorev D (2001), Sternsdorf T (1997), Sahin U (2014)	6
ZBTB1	4	ZBTB2	1	affinity chromatography technology	Kim H (2014)	1
ELAVL1	0	ZMAT3	0	affinity chromatography technology	Abdelmohsen K (2009)	1
SUMO2	0	POGZ	49	pull down	Ouyang J (2009)	1
HNRNPH1	3	HNRNPK	4	affinity chromatography technology	Jeronimo C (2007)	1
EXOSC10	1	SSRP1	1	two hybrid	Lehner B (2004)	1
AHCYL1	2	TUBB6	2	biochemical	Havugimana PC (2012)	1
SUMO2	0	ATF7IP	5	pull down	Ouyang J (2009)	1
SUMO2	0	USPL1	5	pull down, two hybrid, enzymatic study	Schulz S (2012), Wang J (2011), Schulz S (2012)	3
USP25	0	SUMO2	0	pull down, two hybrid, pull down	Meulmeester E (2008), Rolland T (2014), Yang Y (2017)	3
SUMO2	0	C18orf25	3	two hybrid	Hecker CM (2006)	1
KDM1A	2	RCOR3	0	affinity chromatography technology, two hybrid, biochemical	Bantscheff M (2011), Weimann M (2013), Wan C (2015)	3
RBBP4	3	RBBP7	1	biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017), Hauri S (2016), Hauri S (2016)	7
HSD17B10	1	RUVBL1	2	biochemical, affinity chromatography technology	Wan C (2015), Malty RH (2017)	2
UBC	7	MRE11	3	affinity chromatography technology	Matsumoto M (2005)	1
SUMO2	0	WRN	6	two hybrid	Hecker CM (2006)	1
ATF7IP	5	SETDB1	3	pull down, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Ichimura T (2005), Ichimura T (2005), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	5
VCP	6	TUBB	3	affinity chromatography technology, biochemical	Fogeron ML (2013), Wan C (2015)	2
UBE2I	0	UBA2	0	affinity chromatography technology, enzymatic study, enzymatic study, pull down, enzymatic study, enzymatic study, enzymatic study, biochemical, affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), Knipscheer P (2008), Tatham MH (2003), Tatham MH (2003), Huang DT (2009), Gilbreth RN (2011), Okuma T (1999), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	10
SUMO2	0	TOP2B	9	pull down	Ouyang J (2009)	1
MAPK6	1	TDP2	2	two hybrid	Vinayagam A (2011)	1
SUMO2	0	BLM	2	two hybrid	Hecker CM (2006)	1
XRCC6	3	SSRP1	1	affinity chromatography technology	Huttlin EL (2017)	1
USP11	3	MRE11	3	affinity chromatography technology	Sowa ME (2009)	1
HDAC2	1	TOP2B	9	affinity chromatography technology, pull down	Tsai SC (2000), Tsai SC (2000)	2
BRCA1	7	HDAC1	4	pull down	Yarden RI (1999)	1
UBE2I	0	EXOSC9	2	two hybrid	Bandyopadhyay S (2010)	1
SUMO2	0	SEC23B	0	biochemical	Wan C (2015)	1
HIPK2	0	HSPA1A	0	affinity chromatography technology	Choi JR (2016)	1
ZMYM4	4	KDM1A	2	affinity chromatography technology	Hauri S (2016)	1
BRCA1	7	HNRNPF	5	affinity chromatography technology	Ertych N (2016)	1
DNM1L	3	HSD17B10	1	affinity chromatography technology	Malty RH (2017)	1
BRCA1	7	SEC23B	0	affinity chromatography technology	Ertych N (2016)	1
RNF4	1	USP11	3	affinity chromatography technology	Hendriks IA (2015)	1
ZNF496	1	TRIM28	1	pull down	Losson R (2010)	1
SOD1	0	HSPA8	4	affinity chromatography technology, affinity chromatography technology	Choi JS (2004), Karras GI (2017)	2
SUMO2	0	TUBB	3	pull down	Ouyang J (2009)	1
CAD	10	DDX3X	52	biochemical	Wan C (2015)	1
DAXX	5	SUMO2	0	x-ray crystallography, pull down, two hybrid, affinity chromatography technology, affinity chromatography technology, pull down, two hybrid, pull down, two hybrid	Escobar-Cabrera E (2011), Escobar-Cabrera E (2011), Chen A (2006), Chen A (2006), Ullmann R (2012), Ullmann R (2012), Lin DY (2006), Ouyang J (2009), Li C (2017)	9
ENO1	3	HDAC2	1	affinity chromatography technology	Castello A (2012)	1
HDAC1	4	TOP2B	9	affinity chromatography technology, pull down, pull down, two hybrid	Tsai SC (2000), Tsai SC (2000), Johnson CA (2001), Johnson CA (2001)	4
HDAC1	4	DAXX	5	far western blotting, pull down, affinity chromatography technology	Li H (2000), Li H (2000), Li H (2000)	3
RANBP2	9	TOP2B	9	affinity chromatography technology, enzymatic study	Dawlaty MM (2008), Dawlaty MM (2008)	2
TMPO	0	VIM	0	affinity chromatography technology	Brady GF (2018)	1
UBE2I	0	ZHX1	1	two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology	Wang J (2011), Chen S (2013), Chen S (2013), Chen S (2013)	4
BRCA1	7	GATAD2B	15	affinity chromatography technology	Hill SJ (2014)	1
MDC1	8	TP53BP1	3	affinity chromatography technology, affinity chromatography technology, pull down, imaging technique, imaging technique, affinity chromatography technology	Eliezer Y (2009), Eliezer Y (2009), Eliezer Y (2009), Wood JL (2007), Stewart GS (2003), Stewart GS (2003)	6
SUMO2	0	HDAC1	4	pull down	Ouyang J (2009)	1
XRCC5	5	XRCC6	3	two hybrid, biochemical, two hybrid, pull down, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, enzymatic study, enzymatic study, x-ray crystallography, affinity chromatography technology, pull down, biochemical, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, imaging technique, affinity chromatography technology, affinity chromatography technology	Gell D (1999), Barlev NA (1998), Yang CR (1999), Singleton BK (1999), Song K (2000), Gell D (1999), Gell D (1999), Willis DM (2002), Willis DM (2002), Drouet J (2005), Drouet J (2005), Cohen HY (2004), Lan L (2010), Cooper MP (2000), Cooper MP (2000), Velma V (2010), Zheng Y (2011), Sucharov CC (2004), Sucharov CC (2004), Sibani S (2005), Sibani S (2005), Walker JR (2001), Nick McElhinny SA (2000), Nick McElhinny SA (2000), Sand-Dejmek J (2011), Sand-Dejmek J (2011), Sand-Dejmek J (2011), Pucci S (2009), Trougakos IP (2009), Havugimana PC (2012), Sartorius CA (2000), Sartorius CA (2000), Rivera-Calzada A (2007), Kelavkar UP (2001), Kelavkar UP (2001), Kristensen AR (2012), Kim E (2008), Wan C (2015), Hein MY (2015), Hein MY (2015), Nolens G (2009), Nolens G (2009), Nolens G (2009), Nolens G (2009), Huttlin EL (2017), Fantini D (2017)	46
BRCA1	7	TPR	5	affinity chromatography technology	Ertych N (2016)	1
NBN	1	PRKDC	12	pull down, affinity chromatography technology	Falck J (2005), Falck J (2005)	2
HNRNPH1	3	RANBP2	9	biochemical	Havugimana PC (2012)	1
TP53BP1	3	BLM	2	affinity chromatography technology, affinity chromatography technology, imaging technique	Sengupta S (2004), Sengupta S (2004), Sengupta S (2004)	3
NOL9	1	SENP3	1	affinity chromatography technology	Huttlin EL (2017)	1
MUS81	1	ZNF496	1	genetic interference	Vizeacoumar FJ (2013)	1
SUMO2	0	ZMAT3	0	pull down	Ouyang J (2009)	1
ELAVL1	0	ZMYM2	5	affinity chromatography technology	Abdelmohsen K (2009)	1
SENP3	1	VCP	6	affinity chromatography technology	Wang M (2016)	1
SOD1	0	TRIM28	1	affinity chromatography technology	Malty RH (2017)	1
BRCA1	7	NOP2	4	affinity chromatography technology, affinity chromatography technology	Hill SJ (2014), Ertych N (2016)	2
XRCC6	3	SUPT16H	4	affinity chromatography technology	Huttlin EL (2017)	1
SUMO2	0	IRF7	2	imaging technique	Chang PC (2013)	1
ENO1	3	NUMA1	10	affinity chromatography technology	Castello A (2012)	1
UBC	7	MDN1	19	pull down	Nathan JA (2013)	1
SEM1	0	PIAS1	4	affinity chromatography technology	Zhang Y (2014)	1
TOP2B	9	SUPT16H	4	biochemical	Wan C (2015)	1
SOD1	0	RUVBL1	2	affinity chromatography technology	Malty RH (2017)	1
SUMO2	0	ZBED1	0	pull down	Ouyang J (2009)	1
MTA1	3	RBBP7	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yao YL (2003), Roche AE (2008), Huttlin EL (2015), Huttlin EL (2017), Millard CJ (2016), Hauri S (2016)	6
SENP1	0	PML	7	enzymatic study	Galisson F (2011)	1
LAS1L	3	SENP3	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Castle CD (2012), Castle CD (2012), Wang M (2016)	3
ATRX	7	SETDB1	3	affinity chromatography technology	Valle-Garcia D (2016)	1
TRIM63	0	PIAS3	2	two hybrid	Witt CC (2008)	1
TRAF1	0	TANK	1	two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, unspecified method, x-ray crystallography	Rothe M (1996), Wang J (2011), Greenfeld H (2015), Huttlin EL (2017), Kim CM (2017), Kim CM (2017)	6
SUMO2	0	NUMA1	10	pull down	Ouyang J (2009)	1
SUMO2	0	CHAF1A	1	two hybrid, pull down	Uwada J (2010), Uwada J (2010)	2
CSNK2B	5	TOP2B	9	two hybrid	Ahn BH (2001)	1
ZNF451	3	PIAS1	4	two hybrid, imaging technique	Karvonen U (2008), Karvonen U (2008)	2
RNF4	1	TRIM28	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, protein complementation assay	Bruderer R (2011), Kuo CY (2014), Kuo CY (2014), Kuo CY (2014), Kuo CY (2014)	5
PIAS4	5	TOP2A	2	enzymatic study	Ryu H (2010)	1
MTA1	3	CHD4	22	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Yao YL (2003), Xue Y (1998), Cui S (2011), Cui S (2011), Chudnovsky Y (2014), Wan C (2015)	6
SUMO2	0	SETX	7	two hybrid	Hecker CM (2006)	1
ELAVL1	0	HDAC2	1	affinity chromatography technology	Abdelmohsen K (2009)	1
SOD1	0	DNM1L	3	affinity chromatography technology	Malty RH (2017)	1
EWSR1	2	IGBP1	1	bioid	Elzi DJ (2014)	1
HP1BP3	2	NOP2	4	biochemical	Havugimana PC (2012)	1
BRCA1	7	SSRP1	1	genetic interference, imaging technique	Hill SJ (2014), Hill SJ (2014)	2
PIAS4	5	IRF7	2	affinity chromatography technology	Zhang J (2004)	1
HDAC2	1	PML	7	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wu WS (2001), Morey L (2008), Kraemer OH (2008), Kim YE (2015)	4
ELAVL1	0	VCP	6	affinity chromatography technology, pull down	Zhou HL (2013), Zhou HL (2013)	2
TUBB4B	6	TUBB	3	biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012)	2
DDX17	2	HDAC2	1	affinity chromatography technology, affinity chromatography technology	Mooney SM (2010), Mooney SM (2010)	2
EWSR1	2	SUPT16H	4	bioid	Elzi DJ (2014)	1
HSP90AB1	2	SOD1	0	affinity chromatography technology	Karras GI (2017)	1
XRCC5	5	BAZ1A	5	affinity chromatography technology, pull down	Lan L (2010), Lan L (2010)	2
PRKDC	12	RANBP2	9	biochemical	Havugimana PC (2012)	1
SEM1	0	UBE2I	0	affinity chromatography technology	Besche HC (2014)	1
ZMYM4	4	ZMYM3	0	affinity chromatography technology	Hauri S (2016)	1
USPL1	5	ANXA1	1	affinity chromatography technology	Sowa ME (2009)	1
TUBA1B	0	TUBB	3	biochemical	Havugimana PC (2012)	1
SUMO2	0	DCD	0	pull down	Ouyang J (2009)	1
CAD	10	TUBB4B	6	biochemical	Havugimana PC (2012)	1
EP300	36	EWSR1	2	two hybrid, bioid	Wang J (2011), Elzi DJ (2014)	2
DNM1L	3	EEF1G	0	affinity chromatography technology	Malty RH (2017)	1
SUMO2	0	EXOSC10	1	pull down	Ouyang J (2009)	1
HDAC2	1	DAXX	5	far western blotting, affinity chromatography technology	Li H (2000), Hollenbach AD (2002)	2
SOD1	0	SUMO2	0	affinity chromatography technology	Malty RH (2017)	1
NBN	1	RAD50	3	biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang Y (2000), Cerosaletti KM (2003), Trujillo KM (1998), Desai-Mehta A (2001), Goldberg M (2003), Goldberg M (2003), Cho YW (2007), Nakanishi K (2002), Greenberg RA (2006), Falck J (2005), Wu J (2012), Alt JR (2005), Havugimana PC (2012), Wan C (2015), Suhasini AN (2013), Suhasini AN (2013), Lee KY (2015)	17
SUMO2	0	BAZ1B	5	pull down	Ouyang J (2009)	1
XRCC5	5	SSRP1	1	affinity chromatography technology, imaging technique	Sand-Dejmek J (2011), Sand-Dejmek J (2011)	2
DNM1L	3	ATIC	6	biochemical	Wan C (2015)	1
DAXX	5	TOP2A	2	affinity chromatography technology	Hein MY (2015)	1
RAD50	3	CHAMP1	8	biochemical	Wan C (2015)	1
TANK	1	IRF7	2	two hybrid, affinity chromatography technology	Gatot JS (2007), Gatot JS (2007)	2
RUVBL1	2	PRKDC	12	affinity chromatography technology	Izumi N (2010)	1
ZBTB1	4	GATAD2B	15	affinity chromatography technology	Kim H (2014)	1
ELAVL1	0	DDX3X	52	affinity chromatography technology	Abdelmohsen K (2009)	1
ELAVL1	0	MTA2	1	affinity chromatography technology	Abdelmohsen K (2009)	1
NUP153	1	UBE2I	0	affinity chromatography technology	Hein MY (2015)	1
USP11	3	SEC23A	3	biochemical	Kristensen AR (2012)	1
MSH2	4	BLM	2	biochemical, affinity chromatography technology	Wang Y (2000), Yang Q (2004)	2
MTA2	1	CHD3	19	biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical	Zhang Y (1999), Feng Q (2001), Wang Y (2009), Havugimana PC (2012), Wan C (2015)	5
SOD1	0	XRCC5	5	affinity chromatography technology	Malty RH (2017)	1
SUMO2	0	PHF8	6	pull down	Ouyang J (2009)	1
UBE2I	0	SP100	4	enzymatic study, pull down, two hybrid, enzymatic study, enzymatic study, enzymatic study	Knipscheer P (2008), Knipscheer P (2008), Bandyopadhyay S (2010), Pelisch F (2010), Meulmeester E (2008), Knipscheer P (2007)	6
SUMO2	0	CHAMP1	8	pull down	Ouyang J (2009)	1
TP53BP1	3	RNF8	2	imaging technique	Galanty Y (2009)	1
TRIM63	0	PIAS1	4	two hybrid	Witt CC (2008)	1
UBE2I	0	SAE1	0	affinity chromatography technology, enzymatic study, pull down, enzymatic study, biochemical, affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), Tatham MH (2003), Tatham MH (2003), Huang DT (2009), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	7
IGBP1	1	SUMO2	0	biochemical	Havugimana PC (2012)	1
NBN	1	BLM	2	biochemical	Wang Y (2000)	1
UBE2I	0	RNF4	1	two hybrid, two hybrid	Markson G (2009), Bandyopadhyay S (2010)	2
HP1BP3	2	TMPO	0	biochemical	Havugimana PC (2012)	1
TRIM28	1	VIM	0	two hybrid	Stelzl U (2005)	1
TUBB	3	HSPA1A	0	biochemical	Kristensen AR (2012)	1
UBE2I	0	CSNK2B	5	enzymatic study	Jakobs A (2007)	1
SLX4	6	MUS81	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, biochemical, pull down, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, imaging technique, two hybrid, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Svendsen JM (2009), Svendsen JM (2009), Ghosal G (2012), Kim Y (2011), Munoz IM (2009), Munoz IM (2009), Fekairi S (2009), Kim Y (2013), Wilson JS (2013), Wan B (2013), Wan B (2013), Wan B (2013), Rolland T (2014), Yu H (2011), Nair N (2014), Nair N (2014), Nair N (2014), Ouyang J (2015), Huttlin EL (2017), Schuster B (2013), Bogliolo M (2013)	21
HDAC2	1	KDM1A	2	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, genetic interference	Hakimi MA (2002), Hakimi MA (2003), Hakimi MA (2003), Hakimi MA (2003), Tong JK (1998), Lee MG (2005), Humphrey GW (2001), Humphrey GW (2001), Zibetti C (2010), Wang Y (2009), Li Q (2011), Cui S (2011), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Wan C (2015), Wong AS (2016)	17
ELAVL1	0	SENP1	0	affinity chromatography technology	Abdelmohsen K (2009)	1
ENO2	1	ENO1	3	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
NBN	1	IPO5	0	affinity chromatography technology	Falck J (2005)	1
MAPK6	1	SSSCA1	0	affinity chromatography technology	Rodriguez J (2016)	1
ENO1	3	XRCC6	3	affinity chromatography technology	Castello A (2012)	1
HDAC2	1	ZMYM2	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Hakimi MA (2003), Gocke CB (2008), Bantscheff M (2011), Joshi P (2013)	4
USP25	0	USP28	3	affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Huttlin EL (2017)	2
SUMO2	0	HSP90AB1	2	pull down	Ouyang J (2009)	1
BRCA1	7	TRIM28	1	affinity chromatography technology	Ertych N (2016)	1
UBE2I	0	XRCC5	5	enzymatic study	Gocke CB (2005)	1
MDC1	8	WRN	6	unspecified method	Rodriguez M (2003)	1
SUMO2	0	NOL9	1	pull down	Ouyang J (2009)	1
VCP	6	BAD	1	affinity chromatography technology	Yu CC (2013)	1
ELAVL1	0	HNRNPK	4	two hybrid, two hybrid	Hegele A (2012), Hegele A (2012)	2
TMPO	0	DDX3X	52	affinity chromatography technology	Brady GF (2018)	1
SEM1	0	BRCA1	7	two hybrid	Gudmundsdottir K (2007)	1
UIMC1	4	BLM	2	affinity chromatography technology, affinity chromatography technology	Tikoo S (2013), Tikoo S (2013)	2
ATRX	7	TRIM28	1	affinity chromatography technology	Valle-Garcia D (2016)	1
BAZ1B	5	TOP2B	9	biochemical	Havugimana PC (2012)	1
SUMO2	0	EME1	3	pull down, pull down	Ouyang J (2009), Ouyang J (2015)	2
ENO1	3	POGZ	49	affinity chromatography technology	Castello A (2012)	1
HSPA9	2	AHNAK	15	biochemical	Wan C (2015)	1
XRCC5	5	SUPT16H	4	affinity chromatography technology, affinity chromatography technology	Sand-Dejmek J (2011), Sand-Dejmek J (2011)	2
MTA2	1	MTA1	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Yao YL (2003), Yao YL (2003), Cui S (2011), Wan C (2015)	4
CHD4	22	RBBP7	1	affinity chromatography technology, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Havugimana PC (2012), Huttlin EL (2015), Quan J (2014), Huttlin EL (2017)	7
MRE11	3	CHAMP1	8	biochemical	Wan C (2015)	1
SEC23A	3	SEC23B	0	biochemical	Wan C (2015)	1
DAXX	5	SENP3	1	affinity chromatography technology	Hein MY (2015)	1
UBE2I	0	ATXN7	0	affinity chromatography technology	Janer A (2010)	1
BRCA1	7	SEC23A	3	affinity chromatography technology	Ertych N (2016)	1
MAPK6	1	CAD	10	affinity chromatography technology	Rodriguez J (2016)	1
BRCA1	7	UIMC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, imaging technique, affinity chromatography technology	Kim H (2007), Kim H (2007), Sobhian B (2007), Sobhian B (2007), Sowa ME (2009), Strauss C (2011), Strauss C (2011), Feng L (2009), Feng L (2009), Yan J (2007), Wang B (2007), Wang B (2007), Wang B (2007), Nikkilae J (2009), Nikkilae J (2009), Mok MT (2010), Johnson N (2013), Hill SJ (2014), Hu Y (2014), Hu Y (2014), Hu Y (2014), Renaud E (2016), Li Y (2017)	23
SELENBP1	2	SUMO2	0	biochemical	Havugimana PC (2012)	1
MTA2	1	KDM1A	2	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Wang Y (2009), Wang Y (2009), Wang Y (2009), Li Q (2011), Cui S (2011)	5
SEM1	0	VCP	6	affinity chromatography technology, affinity chromatography technology	Besche HC (2014), Besche HC (2014)	2
PHF8	6	BLM	2	affinity chromatography technology	Wang Q (2016)	1
TRIM28	1	CHD3	19	two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Stelzl U (2005), Goodarzi AA (2011), Goodarzi AA (2011), Ivanov AV (2007), Garvin AJ (2013)	5
POGZ	49	CHAMP1	8	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Vermeulen M (2010), Vermeulen M (2010), Hein MY (2015)	3
SUMO2	0	CHD3	19	two hybrid, two hybrid, two hybrid, unspecified method	Stelzl U (2005), Vinayagam A (2011), Goehler H (2004), Garvin AJ (2013)	4
SUMO2	0	MDN1	19	pull down	Ouyang J (2009)	1
AHNAK	15	EEF1A1	0	biochemical	Wan C (2015)	1
CMTM6	0	SUMO2	0	two hybrid	Vinayagam A (2011)	1
XRCC5	5	BRCA1	7	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Wei L (2008), Wei L (2008), Jiang G (2013), Jiang G (2013), Jiang G (2013), Ertych N (2016)	6
SLX4	6	UBC	7	pull down	Lachaud C (2014)	1
RNF111	2	UBC	7	enzymatic study	Wright JD (2016)	1
TMPO	0	DDX17	2	affinity chromatography technology	Brady GF (2018)	1
SUMO2	0	SENP3	1	two hybrid, pull down	Nishida T (2000), Ouyang J (2009)	2
XRCC6	3	BAZ1A	5	pull down	Lan L (2010)	1
HDAC2	1	ZMYM3	0	affinity chromatography technology, affinity chromatography technology	Hakimi MA (2003), Bantscheff M (2011)	2
ZBTB1	4	TUBB4B	6	affinity chromatography technology	Kim H (2014)	1
TRAF1	0	UBC	7	affinity chromatography technology	Greenfeld H (2015)	1
TOP2B	9	UBE2I	0	two hybrid, pull down, affinity chromatography technology, enzymatic study	Mao Y (2000), Mao Y (2000), Mao Y (2000), Gocke CB (2005)	4
EP300	36	PIAS3	2	affinity chromatography technology	Long J (2004)	1
SUMO2	0	RANBP2	9	two hybrid	Hecker CM (2006)	1
SEM1	0	UBC	7	affinity chromatography technology	Besche HC (2014)	1
SUMO2	0	DDX17	2	pull down	Ouyang J (2009)	1
ABRAXAS1	0	BRCA1	7	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, unspecified method	Wang B (2009), Shao G (2009), Hu X (2011), Feng L (2009), Wang B (2007), Wang B (2007), Liu Z (2007), Liu Z (2007), Nikkilae J (2009), Mok MT (2010), Kim H (2007), Kim H (2007), Kim H (2007), Solyom S (2012), Sevcik J (2013), Hill SJ (2014), Wu Q (2016), Wu Q (2016)	18
SETX	7	BRCA1	7	two hybrid, affinity chromatography technology, genetic interference, affinity chromatography technology, affinity chromatography technology, pull down, pull down	Hill SJ (2014), Hill SJ (2014), Hill SJ (2014), Hatchi E (2015), Hatchi E (2015), Hatchi E (2015), Hatchi E (2015)	7
SUMO2	0	KRT5	1	affinity chromatography technology	Matic I (2010)	1
ATRX	7	SUPT16H	4	affinity chromatography technology	Leung JW (2013)	1
SOD1	0	ALDOA	0	affinity chromatography technology	Malty RH (2017)	1
GATAD2B	15	MTA2	1	affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Feng Q (2002), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	5
RANBP2	9	VCP	6	biochemical	Wan C (2015)	1
UBE2I	0	CASP8AP2	3	two hybrid, enzymatic study	Bandyopadhyay S (2010), Gocke CB (2005)	2
MDC1	8	BRCC3	0	affinity chromatography technology	Woods NT (2012)	1
TPR	5	NUP153	1	affinity chromatography technology, pull down, two hybrid, affinity chromatography technology	Hase ME (2003), Hase ME (2003), Hase ME (2003), Hein MY (2015)	4
PIAS2	2	PIAS4	5	two hybrid	Wang J (2011)	1
HIPK2	0	PML	7	affinity chromatography technology, enzymatic study, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, enzymatic study	de la Vega L (2011), Renner F (2010), Sung KS (2011), Sung KS (2011), Gresko E (2009), Gresko E (2009), Gresko E (2009)	7
NOP58	3	UBA2	0	genetic interference	Horlbeck MA (2018)	1
ELAVL1	0	ZBTB2	1	affinity chromatography technology	Abdelmohsen K (2009)	1
EEF1A1	0	HNRNPK	4	biochemical	Havugimana PC (2012)	1
RBBP7	1	BRCA1	7	affinity chromatography technology, two hybrid, pull down, far western blotting, pull down	Chen GC (2001), Chen GC (2001), Yarden RI (2001), Yarden RI (2001), Yarden RI (1999)	5
HSD17B10	1	UBA2	0	affinity chromatography technology	Malty RH (2017)	1
GATAD2B	15	ZBTB33	1	affinity chromatography technology	Huttlin EL (2015)	1
NFE2L2	1	SUMO2	0	fluorescent resonance energy transfe	Malloy MT (2013)	1
BRCA1	7	PSAP	3	two hybrid	Woods NT (2012)	1
TMPO	0	HNRNPH1	3	affinity chromatography technology	Brady GF (2018)	1
PSAP	3	ZBED1	0	two hybrid	Lim J (2006)	1
BRCA1	7	RUVBL1	2	affinity chromatography technology	Ertych N (2016)	1
USP7	14	ANXA1	1	affinity chromatography technology, affinity chromatography technology, pull down	Park JJ (2015), Park JJ (2015), Park JJ (2015)	3
HNRNPH1	3	DDX17	2	affinity chromatography technology	Jeronimo C (2007)	1
BRCA1	7	NBN	1	biochemical, biochemical, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang Y (2000), Chiba N (2001), Zhong Q (1999), Shimada M (2009), Chen L (2008), Hill SJ (2014), Goldstein M (2015), Goldstein M (2015), Parameswaran B (2015)	9
SENP3	1	XRCC5	5	affinity chromatography technology, affinity chromatography technology	Wang M (2016), Wang M (2016)	2
SUMO2	0	PHF5A	3	pull down	Ouyang J (2009)	1
SENP3	1	SSRP1	1	affinity chromatography technology	Wang M (2016)	1
TRIM28	1	SETDB1	3	two hybrid, affinity chromatography technology, affinity chromatography technology	Schultz DC (2002), Schultz DC (2002), Ivanov AV (2007)	3
SSSCA1	0	SENP5	1	affinity chromatography technology	Huttlin EL (2017)	1
PIAS4	5	MDC1	8	enzymatic study	Yin Y (2012)	1
HDAC1	4	BRCC3	0	biochemical	Kristensen AR (2012)	1
XRCC5	5	MSH2	4	biochemical	Kristensen AR (2012)	1
MRE11	3	RAD50	3	biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang Y (2000), Chiba N (2001), Chiba N (2001), Chiba N (2001), Dolganov GM (1996), Dolganov GM (1996), Trujillo KM (1998), Goedecke W (1999), Zheng L (2009), Goldberg M (2003), Goldberg M (2003), Goldberg M (2003), Cho YW (2007), Cho YW (2007), Greenberg RA (2006), Alt JR (2005), Alt JR (2005), Havugimana PC (2012), Wan C (2015), Wijnhoven P (2015), Boldt K (2016), Suhasini AN (2013), Suhasini AN (2013), Lee KY (2015), Nicholson J (2017)	25
KDM1A	2	TRIM28	1	affinity chromatography technology	Cui S (2011)	1
UBC	7	HNRNPH1	3	affinity chromatography technology	Matsumoto M (2005)	1
HDAC1	4	ZBTB2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Joshi P (2013), Hein MY (2015), Huttlin EL (2017)	3
SENP1	0	HIPK2	0	enzymatic study	Kim YH (2005)	1
USP7	14	BRCC3	0	affinity chromatography technology	Sowa ME (2009)	1
EP300	36	TP53BP1	3	affinity chromatography technology	Jung SY (2005)	1
SUMO2	0	PGD	2	biochemical	Wan C (2015)	1
TP53BP1	3	RCOR1	0	affinity chromatography technology	Woods NT (2012)	1
SUMO2	0	TRIML2	0	pull down	Ouyang J (2009)	1
PHF8	6	KDM1A	2	genetic interference	Wong AS (2016)	1
SUMO2	0	NPEPL1	0	biochemical	Wan C (2015)	1
USP11	3	XRCC5	5	affinity chromatography technology	Zhou Z (2017)	1
UBE2I	0	ANXA1	1	enzymatic study	Hirata F (2010)	1
SUMO2	0	XRCC5	5	pull down	Ouyang J (2009)	1
RNF168	0	MKI67	7	affinity chromatography technology	Guturi KK (2016)	1
VIM	0	PIAS4	5	two hybrid	Goehler H (2004)	1
RAD54L2	5	UBE2I	0	two hybrid	Domanskyi A (2006)	1
TMPO	0	CAD	10	affinity chromatography technology	Brady GF (2018)	1
MTA1	3	RBBP4	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, pull down, x-ray crystallography, unspecified method, biochemical, affinity chromatography technology, affinity chromatography technology, pull down, x-ray crystallography, affinity chromatography technology	Yao YL (2003), Roche AE (2008), Cui S (2011), Cui S (2011), Rolland T (2014), Huttlin EL (2015), Alqarni SS (2014), Alqarni SS (2014), Alqarni SS (2014), Wan C (2015), Huttlin EL (2017), Millard CJ (2016), Millard CJ (2016), Millard CJ (2016), Hauri S (2016)	15
HDAC1	4	ZMYM3	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Joshi P (2013), Hein MY (2015), Huttlin EL (2017)	3
BRCA1	7	CAD	10	affinity chromatography technology	Ertych N (2016)	1
HDAC2	1	IPO5	0	affinity chromatography technology	Joshi P (2013)	1
USP11	3	NUP153	1	affinity chromatography technology	Sowa ME (2009)	1
ZBTB1	4	UBC	7	pull down, pull down	Kim H (2014), Kim H (2014)	2
SUMO2	0	ARC	1	affinity chromatography technology	Nair RR (2017)	1
VCP	6	ATXN7	0	affinity chromatography technology, pull down	Fujita K (2013), Fujita K (2013)	2
ELAVL1	0	RBBP4	3	affinity chromatography technology	Abdelmohsen K (2009)	1
HSP90AB1	2	RPL3	0	biochemical	Havugimana PC (2012)	1
IPO5	0	NUP153	1	pull down	Yaseen NR (1997)	1
GATAD2B	15	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Feng Q (2002), Bantscheff M (2011), Joshi P (2013), Huttlin EL (2015), Huttlin EL (2017)	5
VCP	6	TP53BP1	3	affinity chromatography technology	Yu CC (2013)	1
SUMO2	0	HP1BP3	2	pull down	Ouyang J (2009)	1
EP300	36	RAD50	3	affinity chromatography technology, pull down	Jung SY (2005), Karmakar S (2010)	2
USP7	14	TRAF1	0	pull down	Zapata JM (2001)	1
HSD17B10	1	ELAVL1	0	affinity chromatography technology	Malty RH (2017)	1
SLC22A2	0	SUMO2	0	two hybrid	Wang J (2011)	1
ATRX	7	RAD50	3	affinity chromatography technology	Leung JW (2013)	1
SUMO2	0	CAD	10	pull down	Ouyang J (2009)	1
NOP58	3	RPL4	4	biochemical	Havugimana PC (2012)	1
NBN	1	MSH2	4	biochemical	Wang Y (2000)	1
SUMO2	0	ZNF451	3	pull down	Ouyang J (2009)	1
HSD17B10	1	SUMO2	0	affinity chromatography technology	Malty RH (2017)	1
MAPK6	1	RAD50	3	affinity chromatography technology	Rodriguez J (2016)	1
UIMC1	4	ABRAXAS1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Wang B (2007), Wang B (2009), Wang B (2009), Wang B (2009), Shao G (2009), Shao G (2009), Hu X (2011), Patterson-Fortin J (2010), Feng L (2009), Feng L (2009), Feng L (2009), Feng L (2009), Feng L (2009), Feng L (2010), Wang B (2007), Wang B (2007), Liu Z (2007), Liu Z (2007), Nikkilae J (2009), Nikkilae J (2009), Wu J (2009), Kim H (2007), Kim H (2007), Kim H (2007), Solyom S (2012), Cho HJ (2013), Hu Y (2014), Li Y (2017), Zheng H (2013)	30
SUMO2	0	EEF1A1	0	pull down	Ouyang J (2009)	1
HDAC1	4	CSNK2B	5	affinity chromatography technology	Joshi P (2013)	1
TOPORS	6	RBBP7	1	affinity chromatography technology	Pungaliya P (2007)	1
HNRNPK	4	SENP2	3	affinity chromatography technology, affinity chromatography technology	Lee SW (2012), Lee SW (2012)	2
BRCA1	7	SUPT16H	4	genetic interference, imaging technique, affinity chromatography technology	Hill SJ (2014), Hill SJ (2014), Ertych N (2016)	3
TP53BP1	3	XRCC5	5	affinity chromatography technology	Woods NT (2012)	1
DNM1L	3	DDX21	0	affinity chromatography technology	Malty RH (2017)	1
UBA2	0	AHCYL1	2	biochemical	Havugimana PC (2012)	1
PELP1	3	RUVBL1	2	biochemical	Wan C (2015)	1
PHF8	6	USP7	14	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study	Wang Q (2016), Wang Q (2016), Wang Q (2016), Wang Q (2016), Wang Q (2016)	5
SUMO2	0	PIAS2	2	two hybrid, two hybrid, pull down, pull down, pull down	Stehmeier P (2009), Hecker CM (2006), Hecker CM (2006), Ullmann R (2012), Ouyang J (2009)	5
SETDB1	3	PML	7	affinity chromatography technology, affinity chromatography technology	Cho S (2011), Cho S (2011)	2
BAD	1	SUMO2	0	two hybrid	Vinayagam A (2011)	1
UBC	7	HSP90AB1	2	affinity chromatography technology	Bish RA (2007)	1
XRCC5	5	DDX17	2	affinity chromatography technology	Sand-Dejmek J (2011)	1
SUMO2	0	PIAS3	2	two hybrid, two hybrid, pull down	Stehmeier P (2009), Hecker CM (2006), Hecker CM (2006)	3
ELAVL1	0	SUMO2	0	affinity chromatography technology	Abdelmohsen K (2009)	1
DNM1L	3	ALDOA	0	affinity chromatography technology	Malty RH (2017)	1
CTNND1	4	ZBTB33	1	two hybrid, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Daniel JM (1999), Daniel JM (1999), Ruzov A (2004), Del Valle-Perez B (2011), Del Valle-Perez B (2011), Del Valle-Perez B (2011), Del Valle-Perez B (2011), Dai SD (2010), Dai SD (2010), Kelly KF (2004), Kelly KF (2004), Zhang J (2010), Jiang G (2012), Liu Y (2014)	14
RUVBL1	2	TUBB4B	6	biochemical	Wan C (2015)	1
ATXN7	0	EP300	36	affinity chromatography technology	Palhan VB (2005)	1
ZMYM4	4	RCOR1	0	affinity chromatography technology	Hauri S (2016)	1
UBE2I	0	HIPK2	0	two hybrid, two hybrid, two hybrid, pull down, two hybrid, enzymatic study	Lee BH (2003), Bandyopadhyay S (2010), Sung KS (2005), Sung KS (2005), Hofmann TG (2005), Sung KS (2005)	6
VCP	6	NUMA1	10	affinity chromatography technology	Yu CC (2013)	1
SUMO2	0	ENO1	3	pull down	Ouyang J (2009)	1
UBE2I	0	TOP2A	2	pull down, affinity chromatography technology, enzymatic study	Mao Y (2000), Mao Y (2000), Matafora V (2009)	3
TOPORS	6	PML	7	imaging technique	Renner F (2010)	1
SENP3	1	TRIM28	1	affinity chromatography technology	Wang M (2016)	1
SUMO2	0	SAE1	0	affinity chromatography technology, affinity chromatography technology	Li T (2006), Hein MY (2015)	2
RPL3	0	EEF1A1	0	biochemical	Wan C (2015)	1
CAD	10	RUVBL1	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
CAD	10	HSPA8	4	biochemical	Wan C (2015)	1
BRCA1	7	PIAS1	4	imaging technique, enzymatic study, imaging technique	Galanty Y (2009), Morris JR (2009), Morris JR (2009)	3
SUMO2	0	TDG	0	two hybrid, pull down	Hecker CM (2006), Ouyang J (2009)	2
HNRNPH1	3	HNRNPF	5	pull down, biochemical	Chou MY (1999), Havugimana PC (2012)	2
KDM1A	2	UBA2	0	genetic interference	Horlbeck MA (2018)	1
ZBTB1	4	TUBB	3	affinity chromatography technology	Kim H (2014)	1
RNF4	1	MDC1	8	affinity chromatography technology	Yin Y (2012)	1
ZBTB1	4	TUBA1B	0	affinity chromatography technology	Kim H (2014)	1
BRCA1	7	USP7	14	affinity chromatography technology, affinity chromatography technology	Hill SJ (2014), Ertych N (2016)	2
GATAD2B	15	CHD3	19	affinity chromatography technology, biochemical, affinity chromatography technology	Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	3
MTA1	3	UBE2I	0	affinity chromatography technology, pull down	Cong L (2011), Cong L (2011)	2
EWSR1	2	ATF7IP	5	bioid	Elzi DJ (2014)	1
EP300	36	XRCC6	3	enzymatic study	Cohen HY (2004)	1
NBN	1	MRE11	3	biochemical, affinity chromatography technology, biochemical, two hybrid, two hybrid, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, imaging technique, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang Y (2000), Cerosaletti KM (2003), Trujillo KM (1998), Matsuzaki K (2008), Desai-Mehta A (2001), Desai-Mehta A (2001), Desai-Mehta A (2001), Zheng L (2009), Goldberg M (2003), Goldberg M (2003), Goldberg M (2003), Cho YW (2007), Nakanishi K (2002), Shimada M (2009), Shimada M (2009), Yanagihara H (2011), Falck J (2005), Falck J (2005), Falck J (2005), Wu J (2012), Alt JR (2005), Havugimana PC (2012), Wijnhoven P (2015), Suhasini AN (2013), Suhasini AN (2013), Nicholson J (2017)	26
LAS1L	3	NOL9	1	affinity chromatography technology, affinity chromatography technology, biochemical	Castle CD (2012), Castle CD (2012), Wan C (2015)	3
ATRX	7	SSRP1	1	affinity chromatography technology	Leung JW (2013)	1
SIMC1	3	SUMO2	0	affinity chromatography technology, pull down	Sun H (2012), Sun H (2012)	2
ELAVL1	0	HNRNPH1	3	affinity chromatography technology	Abdelmohsen K (2009)	1
SUMO2	0	MDC1	8	pull down	Ouyang J (2009)	1
SUMO2	0	MSH2	4	pull down, pull down	Ouyang J (2009), Ouyang J (2015)	2
SLX4	6	TEX10	3	affinity chromatography technology	Svendsen JM (2009)	1
USP7	14	HNRNPF	5	biochemical	Wan C (2015)	1
BRCA1	7	NFE2L2	1	affinity chromatography technology, affinity chromatography technology	Gorrini C (2013), Gorrini C (2013)	2
ATRX	7	NBN	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Leung JW (2013), Leung JW (2013), Huh MS (2016)	3
ZBTB1	4	TRIM28	1	affinity chromatography technology, affinity chromatography technology	Kim H (2014), Kim H (2014)	2
SUMO2	0	CHAF1B	2	pull down	Ouyang J (2009)	1
BRCA1	7	IPO5	0	affinity chromatography technology	Ertych N (2016)	1
NOP2	4	NOP58	3	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
MAPK6	1	SUMO2	0	affinity chromatography technology	Rodriguez J (2016)	1
MTA2	1	TOP2B	9	affinity chromatography technology	Tsai SC (2000)	1
MTA1	3	GATAD2B	15	biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	4
UBC	7	BABAM2	2	affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Wang B (2009), Zhang X (2017)	3
UBE2I	0	ATF7IP	5	two hybrid	Bandyopadhyay S (2010)	1
ZBED1	0	GATAD2B	15	affinity chromatography technology	Huttlin EL (2017)	1
MUS81	1	VCP	6	genetic interference	Vizeacoumar FJ (2013)	1
TRIM63	0	USP28	3	enzymatic study	Loch CM (2012)	1
RBBP4	3	NOL9	1	affinity chromatography technology	Hauri S (2016)	1
CTSA	2	VIM	0	affinity chromatography technology	Boldt K (2016)	1
SOD1	0	ENO2	1	biochemical	Wan C (2015)	1
HDAC1	4	CHD4	22	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yao YL (2003), Yao YL (2003), Grozinger CM (1999), Tong JK (1998), Tong JK (1998), Humphrey GW (2001), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Terhune SS (2010), Polo SE (2010), Xue Y (1998), Xue Y (1998), Xue Y (1998), Kwintkiewicz J (2011), Cui S (2011), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Quan J (2014), Wan C (2015), Hein MY (2015), Weiss K (2016), Huttlin EL (2017)	28
BRCA1	7	NUP153	1	unspecified method, affinity chromatography technology	Rodriguez M (2003), Ertych N (2016)	2
NOP2	4	SSRP1	1	biochemical	Havugimana PC (2012)	1
PFKM	4	EEF1A1	0	biochemical	Wan C (2015)	1
ZBTB25	2	ZBTB1	4	two hybrid	Ravasi T (2010)	1
ZMYM2	5	PML	7	affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology	Kunapuli P (2006), Kunapuli P (2006), Kunapuli P (2006), Guzzo CM (2014), Guzzo CM (2014)	5
DNM1L	3	XRCC5	5	affinity chromatography technology	Malty RH (2017)	1
EEF1A1	0	CARS	1	affinity chromatography technology	Huttlin EL (2017)	1
MSH2	4	TOP2B	9	biochemical	Havugimana PC (2012)	1
ENO1	3	ANXA1	1	affinity chromatography technology	Castello A (2012)	1
UBC	7	DDX17	2	affinity chromatography technology	Matsumoto M (2005)	1
UBC	7	LAS1L	3	affinity chromatography technology	Matsumoto M (2005)	1
HNRNPK	4	VCP	6	biochemical	Wan C (2015)	1
XRCC5	5	EP300	36	affinity chromatography technology, affinity chromatography technology	Zhang Z (2017), Zhang Z (2017)	2
USP28	3	USP7	14	enzymatic study	Loch CM (2012)	1
MDC1	8	ENO1	3	affinity chromatography technology	Woods NT (2012)	1
PIAS4	5	UBE2I	0	two hybrid, pull down, pull down, pull down	Wang J (2011), Yamamoto H (2003), Yin Y (2012), Ryu H (2010)	4
HSPA8	4	VCP	6	affinity chromatography technology, biochemical, affinity chromatography technology	Vij N (2006), Havugimana PC (2012), Yu CC (2013)	3
ELAVL1	0	ZCCHC7	0	affinity chromatography technology	Abdelmohsen K (2009)	1
CHAF1A	1	PRKDC	12	affinity chromatography technology	Hoek M (2011)	1
KDM1A	2	ZBED1	0	two hybrid	Yu H (2011)	1
UBE2I	0	DAXX	5	two hybrid, enzymatic study, affinity chromatography technology, pull down, enzymatic study, enzymatic study, enzymatic study, two hybrid	Ryu SW (2000), Knipscheer P (2008), Hsieh YL (2013), Hsieh YL (2013), Hsieh YL (2013), Chang CC (2011), Lin DY (2006), Lin DY (2006)	8
UBC	7	BRCA1	7	pull down, enzymatic study	Sobhian B (2007), Zhao GY (2007)	2
HIPK2	0	MYB	3	pull down, two hybrid, affinity chromatography technology	Kurahashi T (2005), Kanei-Ishii C (2004), Kanei-Ishii C (2004)	3
SUMO2	0	RUVBL1	2	pull down	Ouyang J (2009)	1
DDX17	2	RANBP2	9	biochemical	Havugimana PC (2012)	1
UBE2I	0	SETDB1	3	two hybrid	Bandyopadhyay S (2010)	1
VCP	6	HSPA1A	0	affinity chromatography technology	Yu CC (2013)	1
SUMO2	0	HNRNPF	5	pull down	Ouyang J (2009)	1
RCOR1	0	KDM1A	2	biochemical, affinity chromatography technology, affinity chromatography technology, pull down, pull down, x-ray crystallography, affinity chromatography technology, pull down, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, biochemical, affinity chromatography technology	Hakimi MA (2002), You A (2001), You A (2001), Gocke CB (2008), Chen Y (2006), Yang M (2006), Shi YJ (2005), Shi YJ (2005), Lee MG (2005), Lee MG (2005), Humphrey GW (2001), Humphrey GW (2001), Zibetti C (2010), Hwang S (2011), Lin Y (2010), Nicholson TB (2011), Nicholson TB (2011), Cui S (2011), Adamo A (2011), Adamo A (2011), Bantscheff M (2011), Mosammaparast N (2013), Lin Y (2010), Wan C (2015), Boldt K (2016)	25
WRN	6	NBN	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Cheng WH (2005), Kobayashi J (2010), Kobayashi J (2010)	3
EEF1A1	0	RANBP2	9	biochemical	Havugimana PC (2012)	1
USP25	0	ANXA1	1	affinity chromatography technology	Sowa ME (2009)	1
ZMYM2	5	TUBA1B	0	affinity chromatography technology	Gocke CB (2008)	1
BRCA1	7	TOP2A	2	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Lou Z (2005), Lou Z (2005), Lou Z (2005), Hill SJ (2014)	4
SUMO2	0	HNRNPK	4	pull down	Ouyang J (2009)	1
HIPK2	0	SENP2	3	affinity chromatography technology, affinity chromatography technology, imaging technique	Hofmann TG (2005), Hofmann TG (2005), Hofmann TG (2005)	3
BRCA1	7	TUBB6	2	affinity chromatography technology	Ertych N (2016)	1
UBE2I	0	DDX21	0	enzymatic study	Matafora V (2009)	1
MTA2	1	RBBP7	1	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Yao YL (2003), Zhang Y (1999), Feng Q (2001), Wang Y (2009), Fu J (2011), Havugimana PC (2012), Huttlin EL (2015), Huttlin EL (2017), Brasen C (2017), Brasen C (2017), Hauri S (2016)	11
CHAF1B	2	TRIM28	1	affinity chromatography technology	Hauri S (2016)	1
TRIM28	1	BRCC3	0	biochemical	Kristensen AR (2012)	1
TOP2A	2	RANBP2	9	biochemical	Wan C (2015)	1
MDN1	19	PELP1	3	biochemical	Havugimana PC (2012)	1
MTA1	3	EP300	36	affinity chromatography technology	Gururaj AE (2006)	1
BRCC3	0	NUMA1	10	pull down, enzymatic study	Yan K (2015), Yan K (2015)	2
PSAP	3	SUMO2	0	biochemical	Havugimana PC (2012)	1
RUVBL1	2	ELAVL1	0	affinity chromatography technology	Jeronimo C (2007)	1
UBC	7	SUMO2	0	affinity chromatography technology	Sahin U (2014)	1
ZBTB25	2	TNIP1	1	two hybrid	Rolland T (2014)	1
HSPA9	2	HSPA8	4	biochemical	Wan C (2015)	1
BRCA1	7	ENO1	3	two hybrid, affinity chromatography technology	Woods NT (2012), Ertych N (2016)	2
EWSR1	2	SUMO2	0	bioid	Elzi DJ (2014)	1
BRCA1	7	PFKM	4	affinity chromatography technology	Ertych N (2016)	1
SUMO2	0	ZMYM4	4	pull down	Ouyang J (2009)	1
PELP1	3	TEX10	3	affinity chromatography technology, biochemical, biochemical	Castle CD (2012), Castle CD (2012), Wan C (2015)	3
EP300	36	EEF1A1	0	pull down	Karmakar S (2010)	1
DNM1L	3	SUMO2	0	affinity chromatography technology	Malty RH (2017)	1
SUMO2	0	ZBTB25	2	pull down	Ouyang J (2009)	1
MSH2	4	SEC23A	3	biochemical	Kristensen AR (2012)	1
ELAVL1	0	SUPT16H	4	affinity chromatography technology	Abdelmohsen K (2009)	1
SUMO2	0	RCOR2	3	pull down	Ouyang J (2009)	1
PML	7	RANBP2	9	affinity chromatography technology	Satow R (2012)	1
RCOR1	0	HDAC2	1	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Hakimi MA (2002), You A (2001), You A (2001), Battaglioli E (2002), Humphrey GW (2001), Humphrey GW (2001), Bantscheff M (2011), Joshi P (2013)	8
HSD17B10	1	CHD3	19	two hybrid	Vinayagam A (2011)	1
EEF1A1	0	RUVBL1	2	biochemical	Wan C (2015)	1
HDAC2	1	RBBP7	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Hakimi MA (2003), Adenuga D (2010), Xue Y (1998), Havugimana PC (2012), Bantscheff M (2011), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017), Hauri S (2016)	9
TP53BP1	3	XRCC6	3	affinity chromatography technology	Woods NT (2012)	1
SUMO2	0	BABAM2	2	affinity chromatography technology, pull down, affinity chromatography technology	Hu X (2012), Hu X (2012), Guzzo CM (2012)	3
ELAVL1	0	USP28	3	affinity chromatography technology	Abdelmohsen K (2009)	1
UBE2I	0	ZNF451	3	two hybrid, two hybrid, enzymatic study, two hybrid, two hybrid	Rual JF (2005), Bandyopadhyay S (2010), Karvonen U (2008), Karvonen U (2008), Yu H (2011)	5
SUMO2	0	SLX4	6	pull down, pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Ouyang J (2009), Ouyang J (2015), Ouyang J (2015), Ouyang J (2015), Guervilly JH (2015), Guervilly JH (2015)	6
HSPA9	2	HSD17B10	1	biochemical	Wan C (2015)	1
USPL1	5	PGD	2	affinity chromatography technology	Sowa ME (2009)	1
CHAF1A	1	XRCC5	5	affinity chromatography technology, affinity chromatography technology, pull down, pull down	Hoek M (2011), Hoek M (2011), Hoek M (2011), Hoek M (2011)	4
BRCA1	7	HNRNPK	4	affinity chromatography technology	Ertych N (2016)	1
TOP2A	2	MSH2	4	genetic interference	Srivas R (2016)	1
BRCA1	7	DDX21	0	affinity chromatography technology	Ertych N (2016)	1
ELAVL1	0	PIAS4	5	affinity chromatography technology	Abdelmohsen K (2009)	1
HSP90AB1	2	PRKDC	12	affinity chromatography technology	Falsone SF (2005)	1
CHD4	22	KDM1A	2	affinity chromatography technology, affinity chromatography technology	Cui S (2011), Cui S (2011)	2
EWSR1	2	SOD1	0	bioid	Elzi DJ (2014)	1
SUMO2	0	SENP6	2	pull down, enzymatic study	Mukhopadhyay D (2006), Hattersley N (2011)	2
SOD1	0	HSPA9	2	biochemical	Wan C (2015)	1
BRCA1	7	ALDOA	0	affinity chromatography technology	Ertych N (2016)	1
TRIM28	1	MTA2	1	biochemical	Kristensen AR (2012)	1
HSPA8	4	TUBB	3	biochemical	Wan C (2015)	1
VCP	6	SUPT16H	4	affinity chromatography technology	Yu CC (2013)	1
HSD17B10	1	NOP58	3	affinity chromatography technology	Malty RH (2017)	1
UBE2I	0	PIAS2	2	two hybrid, two hybrid, two hybrid, pull down, two hybrid, two hybrid, affinity chromatography technology, pull down, pull down	Rual JF (2005), Lee BH (2003), Bandyopadhyay S (2010), Schmidt D (2002), Wang J (2011), Rolland T (2014), Saul VV (2014), van den Akker E (2005), Schmidt D (2002)	9
UBE2I	0	SSRP1	1	enzymatic study	Gocke CB (2005)	1
SSSCA1	0	ZBTB21	2	affinity chromatography technology	Huttlin EL (2017)	1
CAD	10	EEF1A1	0	biochemical	Wan C (2015)	1
DAXX	5	TOP2B	9	affinity chromatography technology	Hein MY (2015)	1
TMPO	0	VCP	6	affinity chromatography technology	Brady GF (2018)	1
PIAS1	4	MDC1	8	enzymatic study	Yin Y (2012)	1
HSD17B10	1	CSNK2B	5	affinity chromatography technology	Malty RH (2017)	1
RNF168	0	SUMO2	0	affinity chromatography technology, pull down	Shire K (2016), Shire K (2016)	2
TOPORS	6	TRIM28	1	affinity chromatography technology	Pungaliya P (2007)	1
CHAF1A	1	XRCC6	3	affinity chromatography technology, pull down, pull down	Hoek M (2011), Hoek M (2011), Hoek M (2011)	3
EP300	36	NBN	1	affinity chromatography technology, affinity chromatography technology, two hybrid	Jung SY (2005), Jang ER (2011), Jang ER (2011)	3
EWSR1	2	XRCC5	5	affinity chromatography technology	Elzi DJ (2014)	1
KDM1A	2	TP53BP1	3	pull down	Peng B (2015)	1
PML	7	CHD4	22	affinity chromatography technology	Morey L (2008)	1
RAD50	3	BLM	2	biochemical, affinity chromatography technology, affinity chromatography technology	Wang Y (2000), Acharya S (2014), Acharya S (2014)	3
HDAC1	4	CHD3	19	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Tong JK (1998), Tong JK (1998), Kuzmichev A (2002), Sun JM (2007), Terhune SS (2010), Xue Y (1998), Xue Y (1998), Xue Y (1998), Havugimana PC (2012), Joshi P (2013), Hein MY (2015), Huttlin EL (2017)	12
ENO2	1	SUMO2	0	biochemical	Wan C (2015)	1
RUVBL1	2	UBE2I	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Kim JH (2007), Kim JH (2007), Kim JH (2007)	3
SUMO2	0	MAF1	0	two hybrid	Stelzl U (2005)	1
UBC	7	ZNF451	3	pull down, pull down	Karvonen U (2008), Zhang X (2017)	2
SUMO2	0	SUPT16H	4	pull down	Ouyang J (2009)	1
SENP2	3	USP28	3	affinity chromatography technology	Huttlin EL (2017)	1
SUMO2	0	HIPK2	0	pull down	de la Vega L (2011)	1
SUMO2	0	ALAS1	2	two hybrid	Vinayagam A (2011)	1
HDAC2	1	CHD3	19	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Hakimi MA (2003), Tong JK (1998), Tong JK (1998), Hakimi MA (2002), Sun JM (2007), Xue Y (1998), Xue Y (1998), Xue Y (1998), Havugimana PC (2012), Joshi P (2013)	10
HSD17B10	1	ENO2	1	biochemical	Wan C (2015)	1
SUMO2	0	BRCC3	0	pull down, affinity chromatography technology	Hu X (2012), Guzzo CM (2012)	2
WRN	6	XRCC6	3	affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Karmakar P (2002), Karmakar P (2002), Li B (2000), Cooper MP (2000), Cooper MP (2000), Cooper MP (2000), Li B (2004), Li B (2004), Hein MY (2015), Huttlin EL (2017)	10
ATIC	6	SUMO2	0	biochemical	Havugimana PC (2012)	1
USP7	14	TMPO	0	two hybrid, affinity chromatography technology, affinity chromatography technology	Lim J (2006), Hein MY (2015), Brady GF (2018)	3
SOD1	0	UBC	7	affinity chromatography technology	Urushitani M (2004)	1
RANBP2	9	TUBB	3	biochemical	Wan C (2015)	1
ZMYM4	4	CHD4	22	affinity chromatography technology	Hauri S (2016)	1
CMTM6	0	XRCC6	3	two hybrid	Vinayagam A (2011)	1
UIMC1	4	BRCC3	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Sobhian B (2007), Sowa ME (2009), Sowa ME (2009), Wang B (2007), Wang B (2007), Wang B (2009), Shao G (2009), Hu X (2011), Patterson-Fortin J (2010), Feng L (2009), Feng L (2009), Feng L (2009), Feng L (2009), Nikkilae J (2009), Wu J (2009), Shao G (2009), Cho HJ (2013)	17
RNF168	0	KDM1A	2	affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology	Mosammaparast N (2013), Mosammaparast N (2013), Peng B (2015), Peng B (2015), Peng B (2015)	5
HDAC2	1	CHD4	22	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical	Hakimi MA (2003), Schmidt DR (1999), Schmidt DR (1999), Tong JK (1998), Tong JK (1998), Tong JK (1998), ONeill DW (2000), Zhang Y (1998), Zhang Y (1998), Xue Y (1998), Xue Y (1998), Xue Y (1998), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Wan C (2015)	17
USP25	0	SENP2	3	affinity chromatography technology	Xu D (2017)	1
UBC	7	RBBP4	3	affinity chromatography technology	Matsumoto M (2005)	1
RNF8	2	SUMO2	0	two hybrid, pull down, affinity chromatography technology, imaging technique	Liang L (2017), Liang L (2017), Liang L (2017), Liang L (2017)	4
TP53BP1	3	PIAS4	5	imaging technique	Galanty Y (2009)	1
BRCA1	7	HNRNPH1	3	affinity chromatography technology	Ertych N (2016)	1
DDX21	0	SUPT16H	4	biochemical	Havugimana PC (2012)	1
BAZ1A	5	BAZ1B	5	biochemical	Bozhenok L (2002)	1
SENP1	0	SUMO2	0	fluorescent resonance energy transfe, pull down, x-ray crystallography, enzymatic study, pull down, enzymatic study, enzymatic study	Shen L (2006), Shen L (2006), Shen LN (2006), Shen LN (2006), Shen LN (2006), Mukhopadhyay D (2006), Schulz S (2012)	7
KDM1A	2	RBBP4	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Li Q (2011), Cui S (2011), Cui S (2011)	3
SUMO2	0	MUS81	1	pull down, pull down	Ouyang J (2009), Ouyang J (2015)	2
UBE2I	0	TRIM28	1	affinity chromatography technology, pull down, enzymatic study, pull down	Liang Q (2011), Garvin AJ (2013), Ivanov AV (2007), Neo SH (2015)	4
RNF4	1	NFE2L2	1	affinity chromatography technology	Malloy MT (2013)	1
SEM1	0	SUMO2	0	affinity chromatography technology	Besche HC (2014)	1
TRIM63	0	USP7	14	enzymatic study	Loch CM (2012)	1
EEF1A1	0	HSPA8	4	affinity chromatography technology	Aranda-Orgilles B (2008)	1
UBC	7	ZHX1	1	pull down	Nathan JA (2013)	1
ATIC	6	IPO5	0	biochemical	Kristensen AR (2012)	1
BRCA1	7	NUMA1	10	affinity chromatography technology, affinity chromatography technology	Hill SJ (2014), Ertych N (2016)	2
CHD3	19	PIAS4	5	two hybrid	Goehler H (2004)	1
EEF1A1	0	TUBB	3	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
SUMO2	0	SLX4IP	3	pull down, pull down	Ouyang J (2009), Ouyang J (2015)	2
ZMYM2	5	ZMYM4	4	affinity chromatography technology, affinity chromatography technology	Gocke CB (2008), Hauri S (2016)	2
MTA2	1	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical	Yao YL (2003), Yao YL (2003), Hakimi MA (2003), Zhang Y (1999), Banach-Orlowska M (2009), Feng Q (2001), Humphrey GW (2001), Humphrey GW (2001), Wang Y (2009), Fu J (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Wan C (2015)	14
UBE2I	0	ZMYM2	5	two hybrid	Bandyopadhyay S (2010)	1
SLX4	6	MRE11	3	affinity chromatography technology	Ouyang J (2015)	1
IRF7	2	EP300	36	pull down	Yang H (2003)	1
MYB	3	UBE2I	0	two hybrid, enzymatic study	Bies J (2002), Kanei-Ishii C (2012)	2
RPL4	4	MYB	3	affinity chromatography technology, pull down	Egoh A (2010), Egoh A (2010)	2
TUBB6	2	TUBB4B	6	biochemical	Kristensen AR (2012)	1
DNM1L	3	RBBP4	3	affinity chromatography technology	Malty RH (2017)	1
DNM1L	3	XRCC6	3	affinity chromatography technology	Malty RH (2017)	1
PHF8	6	HSPA8	4	affinity chromatography technology	Wang Q (2016)	1
SUMO2	0	BRCA1	7	affinity chromatography technology	Hu X (2012)	1
MAPK6	1	HSPA8	4	affinity chromatography technology	Rodriguez J (2016)	1
SUMO2	0	ZMYM2	5	pull down, two hybrid, pull down, pull down, affinity chromatography technology	Gocke CB (2008), Hecker CM (2006), Ouyang J (2009), Guzzo CM (2014), Guzzo CM (2014)	5
USPL1	5	SP100	4	enzymatic study	Schulz S (2012)	1
VCP	6	SUMO2	0	affinity chromatography technology	Yu CC (2013)	1
BRCA1	7	RPL4	4	affinity chromatography technology	Ertych N (2016)	1
PIAS4	5	HDAC1	4	pull down	Gross M (2004)	1
MTA2	1	RBBP4	3	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, x-ray crystallography, affinity chromatography technology	Yao YL (2003), Zhang Y (1999), Banach-Orlowska M (2009), Pflum MK (2001), Feng Q (2001), Wang Y (2009), Cui S (2011), Havugimana PC (2012), Wan C (2015), Brasen C (2017), Brasen C (2017), Brasen C (2017), Hauri S (2016)	13
AHCYL1	2	SOD1	0	biochemical	Havugimana PC (2012)	1
BRCA1	7	HP1BP3	2	affinity chromatography technology	Ertych N (2016)	1
SUMO2	0	SETDB1	3	two hybrid, two hybrid, pull down	Vinayagam A (2011), Goehler H (2004), Ouyang J (2009)	3
BRCA1	7	TUBB4B	6	affinity chromatography technology	Ertych N (2016)	1
PIAS2	2	PML	7	imaging technique, affinity chromatography technology, affinity chromatography technology, enzymatic study	Cuchet-Lourenco D (2011), Rabellino A (2012), Rabellino A (2012), Rabellino A (2012)	4
PELP1	3	HDAC2	1	affinity chromatography technology, imaging technique	Choi YB (2004), Choi YB (2004)	2
HSD17B10	1	XRCC6	3	affinity chromatography technology	Malty RH (2017)	1
DDX17	2	HNRNPK	4	two hybrid, two hybrid	Hegele A (2012), Hegele A (2012)	2
HDAC1	4	RBBP7	1	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yao YL (2003), Ng HH (1999), Zhang Y (1999), Zhang Y (1997), Banach-Orlowska M (2009), Humphrey GW (2001), Zhang Y (1998), Zhang Y (1998), Xue Y (1998), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Yeh HH (2015), Yeh HH (2015), Huttlin EL (2017), Hauri S (2016)	19
NFE2L2	1	HDAC1	4	affinity chromatography technology	Lee DY (2012)	1
RBBP4	3	HDAC1	4	affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhang Y (2003), Yao YL (2003), Nicolas E (2001), Nicolas E (2001), Grozinger CM (1999), You A (2001), Hassig CA (1997), Hassig CA (1997), Ng HH (1999), Zhang Y (1999), Zhang Y (2002), Hassig CA (1998), Zhang Y (1997), Banach-Orlowska M (2009), Pflum MK (2001), Pflum MK (2001), Skowyra D (2001), Humphrey GW (2001), Zhang Y (1998), Zhang Y (1998), Sun JM (2007), Sun JM (2007), Karwowska-Desaulniers P (2007), Terhune SS (2010), Xue Y (1998), Xue Y (1998), Cui S (2011), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Wan C (2015), Hein MY (2015), Huttlin EL (2017), Hauri S (2016)	35
RAD54L2	5	PIAS1	4	pull down	Ogawa H (2009)	1
HDAC1	4	MTA2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yao YL (2003), Yao YL (2003), You A (2001), Zhang Y (1999), Zhang Y (1999), Yasui D (2002), Banach-Orlowska M (2009), Banach-Orlowska M (2009), Cui Y (2006), Pflum MK (2001), Feng Q (2001), Humphrey GW (2001), Humphrey GW (2001), Humphrey GW (2001), Zhang Y (1998), Terhune SS (2010), Opsahl JA (2010), Wang Y (2009), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Kristensen AR (2012), Wan C (2015), Hein MY (2015), Huttlin EL (2017), Boldt K (2016)	27
SUMO2	0	CUX1	7	pull down	Ouyang J (2009)	1
MRE11	3	TPR	5	biochemical	Wan C (2015)	1
SUMO2	0	PELP1	3	pull down	Ouyang J (2009)	1
EWSR1	2	DDX17	2	affinity chromatography technology	Elzi DJ (2014)	1
CHAF1A	1	RBBP4	3	affinity chromatography technology, affinity chromatography technology	Takami Y (2007), Hauri S (2016)	2
RBBP4	3	BRCA1	7	pull down, affinity chromatography technology, affinity chromatography technology	Yarden RI (1999), Yarden RI (1999), Ertych N (2016)	3
HSPA8	4	PRKDC	12	biochemical	Havugimana PC (2012)	1
CSNK2B	5	SUMO2	0	two hybrid	Vinayagam A (2011)	1
EEF1A1	0	EEF1G	0	biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	4
SAE1	0	HSPA1A	0	enzymatic study	Wen D (2014)	1
AHNAK	15	RUVBL1	2	biochemical	Wan C (2015)	1
SUMO2	0	MRE11	3	pull down	Ouyang J (2009)	1
SUMO2	0	MTA2	1	pull down	Ouyang J (2009)	1
MDC1	8	MRE11	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, unspecified method, pull down, affinity chromatography technology	Xu X (2003), Xu X (2003), Goldberg M (2003), Goldberg M (2003), Goldberg M (2003), Goldberg M (2003), Stewart GS (2003), Chapman JR (2008), Chapman JR (2008), Chapman JR (2008)	10
SEM1	0	USP7	14	affinity chromatography technology	Besche HC (2014)	1
SEC23A	3	SP100	4	biochemical	Havugimana PC (2012)	1
TP53BP1	3	TRIM28	1	affinity chromatography technology	Lin YH (2015)	1
KDM1A	2	PELP1	3	affinity chromatography technology, pull down, imaging technique, imaging technique	Nair SS (2010), Nair SS (2010), Nair SS (2010), Nair SS (2010)	4
USP7	14	UBC	7	enzymatic study, enzymatic study, unspecified method, enzymatic study, pull down	Bremm A (2010), Faesen AC (2011), Ernst A (2013), Holowaty MN (2003), Kwasna D (2018)	5
SENP2	3	DAXX	5	enzymatic study	Lin DY (2006)	1
UBE2I	0	TDP2	2	two hybrid	Lee BH (2003)	1
SOD1	0	SAE1	0	affinity chromatography technology	Malty RH (2017)	1
USP7	14	BABAM2	2	affinity chromatography technology	Sowa ME (2009)	1
TMPO	0	MRE11	3	biochemical	Havugimana PC (2012)	1
UBC	7	BRCC3	0	pull down, enzymatic study, pull down	Wang B (2009), Shao G (2009), Zhang X (2017)	3
MUS81	1	ERCC4	2	affinity chromatography technology	Huttlin EL (2017)	1
TUBA1B	0	TUBB6	2	biochemical	Havugimana PC (2012)	1
SLX4	6	VCP	6	affinity chromatography technology	Ghosal G (2012)	1
ATRX	7	PRKDC	12	affinity chromatography technology	Leung JW (2013)	1
KDM1A	2	HSPA1A	0	affinity chromatography technology	Shi YJ (2005)	1
SEM1	0	EEF1G	0	affinity chromatography technology	Zhang Y (2014)	1
NUP153	1	SUMO2	0	affinity chromatography technology	Hein MY (2015)	1
RAD50	3	MSH2	4	biochemical	Wang Y (2000)	1
MDC1	8	POGZ	49	affinity chromatography technology	Woods NT (2012)	1
UIMC1	4	BABAM2	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Sobhian B (2007), Sowa ME (2009), Sowa ME (2009), Wang B (2009), Wang B (2009), Shao G (2009), Hu X (2011), Patterson-Fortin J (2010), Feng L (2009), Feng L (2009), Feng L (2009), Feng L (2009), Feng L (2009), Wu J (2009)	14
VCP	6	RNF8	2	two hybrid	Rolland T (2014)	1
SUMO2	0	TANK	1	affinity chromatography technology	Renner F (2011)	1
PML	7	CSNK2B	5	affinity chromatography technology	Sivachandran N (2010)	1
BRCA1	7	XRCC6	3	affinity chromatography technology, affinity chromatography technology	Woods NT (2012), Ertych N (2016)	2
SUMO2	0	HSPA1A	0	pull down	Ouyang J (2009)	1
SENP1	0	RANBP2	9	enzymatic study	Gareau JR (2012)	1
KDM1A	2	ZMYM2	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Hakimi MA (2003), Gocke CB (2008), Shi YJ (2005), Lee MG (2005)	4
UBE2I	0	ZCCHC7	0	two hybrid	Rolland T (2014)	1
ELAVL1	0	BAZ1A	5	affinity chromatography technology	Abdelmohsen K (2009)	1
HSP90AB1	2	ALDOA	0	affinity chromatography technology	Falsone SF (2005)	1
SUMO2	0	ABRAXAS1	0	affinity chromatography technology, pull down, affinity chromatography technology	Hu X (2012), Hu X (2012), Guzzo CM (2012)	3
SDHAF2	1	HSPA9	2	affinity chromatography technology	Hein MY (2015)	1
UBE2I	0	RANBP2	9	affinity chromatography technology, pull down, two hybrid, pull down, x-ray crystallography, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), Zhang H (2002), Bandyopadhyay S (2010), Werner A (2012), Tatham MH (2005), Saitoh H (2002), Saitoh H (2002), Gareau JR (2012), Hein MY (2015), Sarkar K (2015), Huttlin EL (2017)	11
NFE2L2	1	UBC	7	affinity chromatography technology	Su C (2015)	1
HSP90AB1	2	HSPA1A	0	biochemical, affinity chromatography technology	Havugimana PC (2012), Falsone SF (2005)	2
ATRX	7	DAXX	5	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography	Xue Y (2003), Xue Y (2003), Xue Y (2003), Xue Y (2003), Xue Y (2003), Ishov AM (2004), Tang J (2004), Tang J (2004), Tang J (2004), Tang J (2004), Lukashchuk V (2010), Lukashchuk V (2010), Everett RD (2013), Everett RD (2013), Leung JW (2013), Delbarre E (2013), Hein MY (2015), Tang M (2015), Tang M (2015), Valle-Garcia D (2016), Li Z (2017)	21
GATAD2B	15	HDAC1	4	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Feng Q (2002), Gong Z (2006), Bantscheff M (2011), Joshi P (2013), Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017)	7
PIAS2	2	ZBED1	0	two hybrid	Rolland T (2014)	1
UBE2I	0	CHD3	19	two hybrid	Lee BH (2003)	1
SENP3	1	DDX17	2	affinity chromatography technology	Wang M (2016)	1
ZNF451	3	KDM1A	2	two hybrid	Weimann M (2013)	1
DDX17	2	EP300	36	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, enzymatic study, affinity chromatography technology	Shin S (2007), Shin S (2007), Shin S (2007), Mooney SM (2010), Mooney SM (2010), Mooney SM (2010)	6
PELP1	3	NOL9	1	affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Castle CD (2012), Castle CD (2012), Wan C (2015), Huttlin EL (2017)	4
SUMO2	0	TUBB4B	6	pull down	Ouyang J (2009)	1
ELAVL1	0	AHCYL1	2	affinity chromatography technology	Abdelmohsen K (2009)	1
IGBP1	1	SP100	4	biochemical	Havugimana PC (2012)	1
BLM	2	TOP2A	2	affinity chromatography technology, affinity chromatography technology	Bhattacharyya S (2009), Bhattacharyya S (2009)	2
CHAF1B	2	CHAF1A	1	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Marheineke K (1998), Kang B (2011), Havugimana PC (2012), Wan C (2015), Hauri S (2016)	5
BRCC3	0	BRCA1	7	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Dong Y (2003), Dong Y (2003), Dong Y (2003), Kumaraswamy E (2007), Nikkilae J (2009), Woods NT (2012), Hill SJ (2014), Hu Y (2014)	8
ERCC4	2	MSH2	4	affinity chromatography technology, affinity chromatography technology	Lan L (2004), Lan L (2004)	2
HDAC2	1	SENP1	0	affinity chromatography technology	Brandl A (2012)	1
MAPK6	1	USP11	3	affinity chromatography technology	Rodriguez J (2016)	1
BRCA1	7	RPL3	0	affinity chromatography technology, affinity chromatography technology	Hill SJ (2014), Ertych N (2016)	2
HSD17B10	1	RBBP7	1	affinity chromatography technology	Malty RH (2017)	1
EP300	36	SUMO2	0	pull down, enzymatic study	Ullmann R (2012), Ullmann R (2012)	2
HSD17B10	1	HDAC1	4	affinity chromatography technology	Malty RH (2017)	1
SUMO2	0	CARS	1	pull down	Ouyang J (2009)	1
HSPA8	4	MYB	3	affinity chromatography technology	Li L (2013)	1
SENP7	5	CHAMP1	8	affinity chromatography technology	Hauri S (2016)	1
SUPT16H	4	WRN	6	affinity chromatography technology	Boldt K (2016)	1
SUMO2	0	TEX10	3	pull down	Ouyang J (2009)	1
CHD3	19	MYB	3	affinity chromatography technology, pull down	Saether T (2007), Saether T (2007)	2
KDM1A	2	EP300	36	affinity chromatography technology	Garcia-Bassets I (2007)	1
SENP1	0	SP100	4	enzymatic study	Schulz S (2012)	1
CSNK2B	5	SSRP1	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
RNF111	2	SUMO2	0	pull down, affinity chromatography technology, enzymatic study, affinity chromatography technology, pull down	Sun H (2012), Sun H (2012), Erker Y (2013), Poulsen SL (2013), Poulsen SL (2013)	5
SUMO2	0	IPO5	0	pull down	Ouyang J (2009)	1
RANBP2	9	NUP153	1	affinity chromatography technology, affinity chromatography technology	Yokoyama N (1995), Hein MY (2015)	2
ELAVL1	0	CHD4	22	affinity chromatography technology	Abdelmohsen K (2009)	1
SUMO2	0	PML	7	imaging technique, two hybrid, pull down	Cuchet-Lourenco D (2011), Li C (2017), Li C (2017)	3
SLX4	6	NBN	1	affinity chromatography technology	Ouyang J (2015)	1
UBE2I	0	KDM1A	2	enzymatic study	Gocke CB (2005)	1
HNRNPH1	3	USP7	14	biochemical	Havugimana PC (2012)	1
USP7	14	PML	7	affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology	Sivachandran N (2010), Sarkari F (2011), Sarkari F (2011), Hein MY (2015)	4
ENO1	3	HDAC1	4	pull down, affinity chromatography technology	Ghosh AK (1999), Ghosh AK (1999)	2
SUMO2	0	HSPA9	2	pull down	Ouyang J (2009)	1
UBE2I	0	ZBTB1	4	enzymatic study	Matic I (2010)	1
AHNAK	15	NOL9	1	two hybrid	Rolland T (2014)	1
BRCA1	7	AHNAK	15	affinity chromatography technology	Ertych N (2016)	1
HDAC1	4	VIM	0	affinity chromatography technology	Terhune SS (2010)	1
SUMO2	0	RBBP4	3	pull down	Ouyang J (2009)	1
AHNAK	15	HNRNPH1	3	biochemical	Wan C (2015)	1
KDM1A	2	SETDB1	3	two hybrid	Stelzl U (2005)	1
HSD17B10	1	XRCC5	5	affinity chromatography technology	Malty RH (2017)	1
TOP2A	2	CSNK2B	5	biochemical	Wan C (2015)	1
TP53BP1	3	NUMA1	10	affinity chromatography technology	Woods NT (2012)	1
PML	7	EME1	3	affinity chromatography technology	Hein MY (2015)	1
EWSR1	2	PELP1	3	bioid	Elzi DJ (2014)	1
SLX4	6	EME1	3	affinity chromatography technology, pull down, biochemical, affinity chromatography technology, pull down	Svendsen JM (2009), Munoz IM (2009), Munoz IM (2009), Fekairi S (2009), Fekairi S (2009)	5
SEM1	0	MDN1	19	affinity chromatography technology	Zhang Y (2014)	1
UBE2I	0	NOP58	3	enzymatic study	Matic I (2010)	1
UBE2I	0	PIAS1	4	two hybrid, pull down, two hybrid, two hybrid, affinity chromatography technology, pull down, pull down, pull down, pull down, enzymatic study, pull down, pull down	Lee BH (2003), Sapetschnig A (2002), Kahyo T (2001), Bandyopadhyay S (2010), Driscoll JJ (2010), Kahyo T (2001), Yin Y (2012), Gocke CB (2005), van den Akker E (2005), Ogawa H (2009), Schmidt D (2002), Gibbs-Seymour I (2015)	12
EXOSC9	2	EEF1G	0	affinity chromatography technology	Hein MY (2015)	1
CASP8AP2	3	PML	7	two hybrid	Wang J (2011)	1
CHAF1B	2	RBBP4	3	affinity chromatography technology, affinity chromatography technology	Hauri S (2016), Hauri S (2016)	2
SENP2	3	NUP153	1	pull down, pull down, affinity chromatography technology	Hang J (2002), Zhang H (2002), Hein MY (2015)	3
SEM1	0	EEF1A1	0	affinity chromatography technology	Zhang Y (2014)	1
TP53BP1	3	UBC	7	affinity chromatography technology	Benada J (2015)	1
MDN1	19	TEX10	3	biochemical	Havugimana PC (2012)	1
UBE2I	0	CHD4	22	enzymatic study	Gocke CB (2005)	1
MDC1	8	BRCA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, imaging technique, imaging technique	Matsuoka S (2007), Strauss C (2011), Strauss C (2011), Stewart GS (2003), Lou Z (2003), Mok MT (2010), Au WW (2005)	7
NFE2L2	1	TRIM28	1	biochemical, imaging technique	Gjyshi O (2015), Gjyshi O (2015)	2
SUMO2	0	ZBTB1	4	affinity chromatography technology	Matic I (2010)	1
RNF168	0	UBC	7	pull down, pull down, pull down, pull down, pull down	Panier S (2012), Feng L (2012), Thorslund T (2015), Luijsterburg MS (2017), Luijsterburg MS (2017)	5
UBC	7	CHD4	22	affinity chromatography technology	Matsumoto M (2005)	1
RNF8	2	HOMEZ	2	two hybrid	Rolland T (2014)	1
RNF4	1	UBC	7	enzymatic study, enzymatic study	Groocock LM (2014), Branigan E (2015)	2
USP28	3	SUMO2	0	affinity chromatography technology, x-ray crystallography, pull down	Sowa ME (2009), Wen Y (2015), Wen Y (2015)	3
BRCA1	7	HSP90AB1	2	affinity chromatography technology	Ertych N (2016)	1
UBC	7	HNRNPF	5	affinity chromatography technology	Matsumoto M (2005)	1
SUMO2	0	CHD4	22	pull down	Ouyang J (2009)	1
ATRX	7	XRCC5	5	affinity chromatography technology	Leung JW (2013)	1