PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368223	[[156638554, 156642997], [156643245, 156643319], [156645007, 156645132], [156646273, 156647189]]	[[156639113, 156642997], [156643245, 156643319], [156645007, 156645132], [156646273, 156647056]]
NM_006617	[[156638554, 156642997], [156643245, 156643319], [156645007, 156645132], [156646273, 156647189]]	[[156639113, 156642997], [156643245, 156643319], [156645007, 156645132], [156646273, 156647056]]

Promoter

Chrom	Start	End	Description
chr1	156640649	156640659	CAGE_peak_2_at_NES_5end
chr1	156641913	156641932	CAGE_peak_3_at_NES_5end
chr1	156642431	156642448	CAGE_peak_5_at_NES_5end
chr1	156642464	156642497	CAGE_peak_4_at_NES_5end
chr1	156642538	156642550	CAGE_peak_10_at_NES_5end
chr1	156647192	156647207	CAGE_peak_1_at_NES_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I156656	156656585	156671932	2.25	[{'connected_gene': 'GON4L', 'score': 89.12}, {'connected_gene': 'KHDC4', 'score': 63.33}, {'connected_gene': 'RRNAD1', 'score': 54.29}, {'connected_gene': 'LOC246784', 'score': 53.85}, {'connected_gene': 'PRCC', 'score': 38.83}, {'connected_gene': 'MSTO2P', 'score': 38.78}, {'connected_gene': 'LMNA', 'score': 31.82}, {'connected_gene': 'ISG20L2', 'score': 24.41}, {'connected_gene': 'YY1AP1', 'score': 23.53}, {'connected_gene': 'CCT3', 'score': 18.02}, {'connected_gene': 'SYT11', 'score': 14.22}, {'connected_gene': 'TSACC', 'score': 11.68}, {'connected_gene': 'ENSG00000272405', 'score': 11.0}, {'connected_gene': 'SSR2', 'score': 10.89}, {'connected_gene': 'DAP3', 'score': 10.83}, {'connected_gene': 'GLMP', 'score': 10.74}, {'connected_gene': 'BGLAP', 'score': 10.24}, {'connected_gene': 'PEAR1', 'score': 10.18}, {'connected_gene': 'PMF1', 'score': 9.85}, {'connected_gene': 'ETV3', 'score': 9.8}, {'connected_gene': 'RIT1', 'score': 9.77}, {'connected_gene': 'NES', 'score': 7.26}, {'connected_gene': 'ENSG00000272068', 'score': 7.19}, {'connected_gene': 'GPATCH4', 'score': 2.41}, {'connected_gene': 'HAPLN2', 'score': 1.44}, {'connected_gene': 'PAQR6', 'score': 1.36}, {'connected_gene': 'GC01P156668', 'score': 0.77}, {'connected_gene': 'LOC105371453', 'score': 0.77}, {'connected_gene': 'BCAN', 'score': 0.34}]
chr1	GH01I156696	156696488	156698494	0.52	[{'connected_gene': 'NES', 'score': 12.52}, {'connected_gene': 'LOC105371453', 'score': 12.46}, {'connected_gene': 'BCAN', 'score': 12.4}, {'connected_gene': 'RRNAD1', 'score': 11.19}, {'connected_gene': 'ISG20L2', 'score': 11.19}, {'connected_gene': 'HDGF', 'score': 10.69}, {'connected_gene': 'PRCC', 'score': 10.32}, {'connected_gene': 'NAXE', 'score': 9.65}, {'connected_gene': 'CRABP2', 'score': 7.59}, {'connected_gene': 'ENSG00000237588', 'score': 0.44}]
chr1	GH01I156672	156672623	156678738	2.48	[{'connected_gene': 'NES', 'score': 571.56}, {'connected_gene': 'ENSG00000272068', 'score': 5.42}, {'connected_gene': 'GC01P156668', 'score': 0.44}]
chr1	GH01I156686	156686389	156686538	0.52	[{'connected_gene': 'ENSG00000237588', 'score': 0.44}, {'connected_gene': 'NES', 'score': 0.44}]
chr1	GH01I156684	156684089	156685157	0.76	[{'connected_gene': 'ENSG00000272068', 'score': 5.15}, {'connected_gene': 'ENSG00000237588', 'score': 0.44}, {'connected_gene': 'NES', 'score': 0.44}]